Wall clock time and date at job start Tue Mar 31 2020 12:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34767 * 117.00068 * 2 1 4 4 O 1.21519 * 119.99763 * 359.97438 * 3 2 1 5 5 C 1.47305 * 120.00206 * 180.02562 * 3 2 1 6 6 C 1.39860 * 120.24505 * 90.22451 * 5 3 2 7 7 F 1.35098 * 120.05381 * 0.02562 * 6 5 3 8 8 C 1.38247 * 119.88928 * 180.27940 * 6 5 3 9 9 C 1.38401 * 120.38688 * 359.74478 * 8 6 5 10 10 C 1.38099 * 120.49942 * 0.02562 * 9 8 6 11 11 C 1.39137 * 120.09164 * 359.97438 * 10 9 8 12 12 C 1.48156 * 120.19231 * 179.97438 * 11 10 9 13 13 C 1.39710 * 120.02818 * 64.99565 * 12 11 10 14 14 C 1.38413 * 120.41005 * 180.02562 * 13 12 11 15 15 C 1.37695 * 120.46874 * 0.02562 * 14 13 12 16 16 C 1.40736 * 120.04837 * 359.97438 * 15 14 13 17 17 C 1.41320 * 120.20336 * 179.97438 * 16 15 14 18 18 H 1.07997 * 119.99913 * 154.57615 * 17 16 15 19 19 C 1.39930 * 119.99964 * 334.57221 * 17 16 15 20 20 N 1.30845 * 119.99897 * 343.02749 * 19 17 16 21 21 Si 1.86799 * 119.99766 * 163.02585 * 19 17 16 22 22 H 1.48496 * 109.47463 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46885 * 119.99924 * 21 19 17 24 24 H 1.48501 * 109.47226 * 239.99999 * 21 19 17 25 25 C 1.39187 * 120.02882 * 245.26200 * 12 11 10 26 26 F 1.35105 * 120.23204 * 0.02562 * 25 12 11 27 27 H 1.09003 * 109.46840 * 300.00126 * 1 2 3 28 28 H 1.09000 * 109.46970 * 59.99819 * 1 2 3 29 29 H 1.08999 * 109.47398 * 180.02562 * 1 2 3 30 30 H 1.08002 * 119.80108 * 179.77180 * 8 6 5 31 31 H 1.08001 * 119.74893 * 179.97438 * 9 8 6 32 32 H 1.08000 * 119.95642 * 180.02562 * 10 9 8 33 33 H 1.07997 * 119.79414 * 359.97438 * 13 12 11 34 34 H 1.07996 * 119.76645 * 179.97438 * 14 13 12 35 35 H 1.08008 * 119.97362 * 180.02562 * 15 14 13 36 36 H 0.97001 * 119.99723 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2008 0.0000 4 8 1.4020 2.2199 -0.0005 5 6 3.5349 1.2779 -0.0006 6 6 4.2377 1.3198 -1.2091 7 9 3.5685 1.2901 -2.3823 8 6 5.6186 1.3863 -1.2010 9 6 6.3110 1.4171 -0.0031 10 6 5.6331 1.3813 1.1995 11 6 4.2434 1.3143 1.2152 12 6 3.5138 1.2752 2.5040 13 6 3.5611 2.3724 3.3677 14 6 2.8829 2.3442 4.5740 15 6 2.1534 1.2349 4.9391 16 6 2.0924 0.1188 4.0839 17 6 1.3451 -1.0216 4.4556 18 1 0.9525 -1.6811 3.6959 19 6 1.1140 -1.2963 5.8081 20 7 1.8425 -0.7163 6.7273 21 14 -0.2347 -2.4910 6.3012 22 1 -0.9082 -3.0077 5.0827 23 1 0.3591 -3.6238 7.0559 24 1 -1.2268 -1.7919 7.1569 25 6 2.7853 0.1433 2.8580 26 9 2.7404 -0.9232 2.0299 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 6.1600 1.4148 -2.1351 31 1 7.3898 1.4686 -0.0089 32 1 6.1822 1.4062 2.1291 33 1 4.1310 3.2476 3.0928 34 1 2.9270 3.1980 5.2339 35 1 1.6270 1.2217 5.8821 36 1 1.6824 -0.9071 7.6648 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244347224.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:25 Heat of formation + Delta-G solvation = -145.439998 kcal Electronic energy + Delta-G solvation = -26720.775007 eV Core-core repulsion = 22577.076168 eV Total energy + Delta-G solvation = -4143.698838 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.17409 -49.16586 -41.68504 -40.05876 -38.83981 -37.56789 -35.80149 -33.46344 -32.27925 -31.52711 -29.81983 -28.73136 -27.31429 -25.39804 -24.39488 -22.69218 -22.49191 -21.89598 -19.59802 -19.09242 -18.34564 -18.08687 -18.04863 -17.81045 -17.19192 -16.80378 -16.77129 -16.38178 -16.11591 -15.87922 -15.83974 -14.89482 -14.71569 -14.63431 -14.54156 -14.14283 -13.82999 -13.58272 -13.51102 -13.28713 -13.14802 -12.93693 -12.83448 -12.65396 -12.52136 -12.19633 -11.90655 -11.87974 -11.73071 -11.47126 -11.13826 -10.20533 -9.93369 -9.46415 -9.20840 -8.73478 -6.45827 -0.26376 -0.03557 0.73919 0.75974 0.84264 1.35671 1.43988 1.50522 1.63908 2.16688 2.40936 2.58258 2.92701 3.41890 3.49565 3.58513 3.89300 3.94390 4.03706 4.13545 4.20095 4.21624 4.41658 4.49121 4.56132 4.69188 4.75612 4.90477 4.95922 5.06370 5.11323 5.18922 5.22068 5.29365 5.52093 5.63050 5.72777 5.93022 5.95622 6.09206 6.44081 6.49783 6.73304 6.81199 8.22974 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.016984 B = 0.004962 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1648.193268 B = 5641.620062 C = 6419.459151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.347 6.347 3 C 0.521 3.479 4 O -0.527 6.527 5 C -0.165 4.165 6 C 0.118 3.882 7 F -0.140 7.140 8 C -0.142 4.142 9 C -0.046 4.046 10 C -0.117 4.117 11 C 0.022 3.978 12 C -0.090 4.090 13 C -0.186 4.186 14 C -0.111 4.111 15 C -0.158 4.158 16 C 0.055 3.945 17 C -0.489 4.489 18 H 0.069 0.931 19 C 0.041 3.959 20 N -0.815 5.815 21 Si 0.981 3.019 22 H -0.263 1.263 23 H -0.262 1.262 24 H -0.258 1.258 25 C -0.028 4.028 26 F -0.155 7.155 27 H 0.048 0.952 28 H 0.076 0.924 29 H 0.130 0.870 30 H 0.185 0.815 31 H 0.193 0.807 32 H 0.156 0.844 33 H 0.133 0.867 34 H 0.131 0.869 35 H 0.116 0.884 36 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.739 2.313 -9.284 11.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.263 6.263 3 C 0.365 3.635 4 O -0.417 6.417 5 C -0.167 4.167 6 C 0.098 3.902 7 F -0.118 7.118 8 C -0.160 4.160 9 C -0.063 4.063 10 C -0.135 4.135 11 C 0.021 3.979 12 C -0.091 4.091 13 C -0.205 4.205 14 C -0.129 4.129 15 C -0.178 4.178 16 C 0.052 3.948 17 C -0.517 4.517 18 H 0.088 0.912 19 C -0.175 4.175 20 N -0.440 5.440 21 Si 0.801 3.199 22 H -0.186 1.186 23 H -0.187 1.187 24 H -0.183 1.183 25 C -0.048 4.048 26 F -0.134 7.134 27 H 0.067 0.933 28 H 0.095 0.905 29 H 0.148 0.852 30 H 0.202 0.798 31 H 0.211 0.789 32 H 0.174 0.826 33 H 0.151 0.849 34 H 0.148 0.852 35 H 0.134 0.866 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.510 2.549 -9.107 11.481 hybrid contribution -1.462 -0.693 0.221 1.633 sum 5.049 1.856 -8.886 10.388 Atomic orbital electron populations 1.23540 0.74854 1.05676 1.02255 1.86718 1.24972 1.31730 1.82848 1.21276 0.89674 0.81774 0.70791 1.90784 1.67339 1.36973 1.46583 1.19294 0.89436 1.13047 0.94952 1.17764 0.91555 1.02485 0.78378 1.91490 1.81295 1.93837 1.45223 1.21541 0.89392 1.02540 1.02494 1.21661 1.02708 0.92804 0.89170 1.21604 0.90752 0.99889 1.01251 1.18729 0.94534 0.95478 0.89144 1.18590 1.00836 0.94752 0.94905 1.20641 1.06941 0.97811 0.95140 1.21007 0.97563 0.97914 0.96396 1.21300 1.03161 0.92330 1.00959 1.17920 0.91686 0.94746 0.90486 1.19632 1.30470 1.08258 0.93381 0.91247 1.26671 0.97375 0.97979 0.95468 1.69821 1.33411 1.37790 1.02980 0.85167 0.77820 0.77870 0.78999 1.18632 1.18652 1.18256 1.18131 1.07092 0.85860 0.93723 1.91306 1.95669 1.55247 1.71136 0.93325 0.90506 0.85196 0.79811 0.78941 0.82632 0.84914 0.85154 0.86592 0.89569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.02 10.57 113.37 1.20 2.21 16 2 O -0.35 -14.70 8.73 -56.78 -0.50 -15.20 16 3 C 0.52 22.91 5.41 70.21 0.38 23.29 16 4 O -0.53 -25.06 16.90 19.77 0.33 -24.73 16 5 C -0.17 -6.42 5.63 -19.88 -0.11 -6.53 16 6 C 0.12 3.65 7.29 22.66 0.17 3.81 16 7 F -0.14 -4.45 16.83 44.97 0.76 -3.69 16 8 C -0.14 -2.93 10.00 22.31 0.22 -2.71 16 9 C -0.05 -0.85 10.02 22.28 0.22 -0.63 16 10 C -0.12 -3.18 9.72 22.45 0.22 -2.96 16 11 C 0.02 0.82 5.02 -19.81 -0.10 0.72 16 12 C -0.09 -4.06 4.69 -20.06 -0.09 -4.15 16 13 C -0.19 -7.85 9.73 22.67 0.22 -7.63 16 14 C -0.11 -4.87 10.00 22.18 0.22 -4.65 16 15 C -0.16 -8.07 8.68 22.75 0.20 -7.87 16 16 C 0.05 2.98 5.57 -21.27 -0.12 2.87 16 17 C -0.49 -26.74 8.77 23.44 0.21 -26.54 16 18 H 0.07 3.84 7.75 -2.91 -0.02 3.81 16 19 C 0.04 2.05 5.15 85.25 0.44 2.49 16 20 N -0.81 -40.99 10.96 21.82 0.24 -40.75 16 21 Si 0.98 37.75 29.59 68.60 2.03 39.78 16 22 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 23 H -0.26 -9.57 7.11 99.48 0.71 -8.87 16 24 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 25 C -0.03 -1.44 6.59 23.13 0.15 -1.29 16 26 F -0.15 -8.07 14.09 44.97 0.63 -7.44 16 27 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 28 H 0.08 2.28 8.14 -2.39 -0.02 2.26 16 29 H 0.13 3.56 8.14 -2.39 -0.02 3.54 16 30 H 0.18 2.25 8.06 -2.91 -0.02 2.22 16 31 H 0.19 1.57 8.06 -2.91 -0.02 1.55 16 32 H 0.16 3.69 8.06 -2.91 -0.02 3.67 16 33 H 0.13 4.68 8.06 -2.91 -0.02 4.66 16 34 H 0.13 4.81 8.06 -2.91 -0.02 4.79 16 35 H 0.12 6.07 6.19 -2.91 -0.02 6.05 16 36 H 0.29 13.13 8.30 -92.71 -0.77 12.37 16 Total: -1.00 -69.90 328.20 8.05 -61.85 By element: Atomic # 1 Polarization: 18.61 SS G_CDS: 1.14 Total: 19.74 kcal Atomic # 6 Polarization: -32.98 SS G_CDS: 3.42 Total: -29.56 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.24 Total: -40.75 kcal Atomic # 8 Polarization: -39.77 SS G_CDS: -0.16 Total: -39.93 kcal Atomic # 9 Polarization: -12.52 SS G_CDS: 1.39 Total: -11.13 kcal Atomic # 14 Polarization: 37.75 SS G_CDS: 2.03 Total: 39.78 kcal Total: -69.90 8.05 -61.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244347224.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -83.591 kcal (2) G-P(sol) polarization free energy of solvation -69.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds