Wall clock time and date at job start Tue Mar 31 2020 12:40:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34764 * 117.00140 * 2 1 4 4 O 1.21514 * 119.99942 * 0.02562 * 3 2 1 5 5 C 1.47341 * 120.00016 * 180.02562 * 3 2 1 6 6 C 1.39836 * 120.23889 * 269.99935 * 5 3 2 7 7 F 1.35103 * 120.05411 * 359.97438 * 6 5 3 8 8 C 1.38264 * 119.89095 * 180.02562 * 6 5 3 9 9 C 1.38383 * 120.37883 * 0.02562 * 8 6 5 10 10 C 1.38124 * 120.49103 * 359.97438 * 9 8 6 11 11 C 1.39104 * 120.09543 * 0.25588 * 10 9 8 12 12 C 1.48212 * 120.18695 * 179.72150 * 11 10 9 13 13 C 1.39777 * 119.99436 * 130.00289 * 12 11 10 14 14 C 1.38597 * 120.34013 * 179.97438 * 13 12 11 15 15 F 1.35106 * 119.83084 * 180.02562 * 14 13 12 16 16 C 1.37956 * 120.34153 * 0.05472 * 14 13 12 17 17 C 1.40721 * 119.98502 * 359.96812 * 16 14 13 18 18 C 1.41429 * 120.16682 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99920 * 154.70836 * 18 17 16 20 20 C 1.39926 * 120.00157 * 334.70772 * 18 17 16 21 21 N 1.30828 * 120.00077 * 342.86555 * 20 18 17 22 22 Si 1.86799 * 120.00146 * 162.86589 * 20 18 17 23 23 H 1.48502 * 109.46985 * 90.00243 * 22 20 18 24 24 H 1.48501 * 109.47347 * 209.99974 * 22 20 18 25 25 H 1.48498 * 109.47128 * 330.00205 * 22 20 18 26 26 C 1.38848 * 119.99668 * 309.72602 * 12 11 10 27 27 H 1.08997 * 109.47362 * 300.00129 * 1 2 3 28 28 H 1.09008 * 109.47308 * 59.99915 * 1 2 3 29 29 H 1.09003 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.81072 * 180.02562 * 8 6 5 31 31 H 1.08007 * 119.75370 * 179.97438 * 9 8 6 32 32 H 1.08001 * 119.95151 * 179.97438 * 10 9 8 33 33 H 1.08000 * 119.83115 * 359.97438 * 13 12 11 34 34 H 1.07997 * 120.00624 * 179.97438 * 16 14 13 35 35 H 0.97003 * 120.00361 * 179.97438 * 21 20 18 36 36 H 1.07995 * 120.17225 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2199 0.0005 5 6 3.5352 1.2778 -0.0006 6 6 4.2389 1.3144 1.2072 7 9 3.5707 1.2797 2.3810 8 6 5.6196 1.3873 1.1983 9 6 6.3107 1.4248 0.0000 10 6 5.6314 1.3895 -1.2022 11 6 4.2422 1.3211 -1.2166 12 6 3.5109 1.2893 -2.5054 13 6 2.5361 0.3135 -2.7319 14 6 1.8476 0.2775 -3.9342 15 9 0.9070 -0.6698 -4.1419 16 6 2.1182 1.2036 -4.9202 17 6 3.0972 2.1918 -4.7074 18 6 3.3773 3.1435 -5.7154 19 1 3.7890 4.1060 -5.4499 20 6 3.1210 2.8380 -7.0566 21 7 2.9477 1.5940 -7.4227 22 14 3.0264 4.2065 -8.3246 23 1 4.3762 4.4465 -8.8954 24 1 2.0930 3.8119 -9.4101 25 1 2.5349 5.4488 -7.6764 26 6 3.7903 2.2323 -3.4855 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 6.1618 1.4151 2.1319 31 1 7.3892 1.4822 0.0048 32 1 6.1795 1.4197 -2.1323 33 1 2.3182 -0.4161 -1.9660 34 1 1.5787 1.1703 -5.8552 35 1 2.7697 1.3822 -8.3524 36 1 4.5402 2.9899 -3.3118 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244347379.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:33 Heat of formation + Delta-G solvation = -136.328448 kcal Electronic energy + Delta-G solvation = -26086.527146 eV Core-core repulsion = 21943.223414 eV Total energy + Delta-G solvation = -4143.303732 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.99637 -47.75304 -40.38403 -38.78683 -37.22587 -36.13180 -34.05178 -31.98173 -31.00612 -29.79526 -28.30952 -27.50721 -25.63054 -24.15029 -23.08447 -21.23119 -20.75386 -20.49717 -18.21768 -17.67278 -16.96664 -16.77075 -16.56953 -15.86072 -15.63972 -15.60962 -15.01080 -14.95622 -14.75226 -14.69922 -14.41507 -13.74338 -13.41934 -13.29028 -12.98233 -12.79807 -12.52522 -12.12375 -12.05761 -11.81418 -11.73068 -11.54011 -11.22345 -11.17204 -10.85365 -10.57849 -10.47422 -10.35477 -10.19379 -9.83148 -9.42703 -9.00780 -8.75496 -7.67543 -7.44294 -6.96830 -4.62816 0.89726 1.09654 2.29539 2.51502 2.55827 2.87906 2.97643 2.99044 3.05706 3.57480 3.78989 4.07603 4.34683 4.67780 4.79313 4.97972 5.15941 5.21780 5.27086 5.35316 5.38523 5.56813 5.67868 5.78672 5.90717 5.98615 6.19694 6.24702 6.36683 6.41998 6.53238 6.67286 6.80757 6.82825 6.99809 7.25446 7.48269 7.53319 7.71908 7.88011 7.98052 8.34164 8.60609 8.62759 9.96845 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.004414 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.177749 B = 6342.129242 C = 7403.310099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.348 6.348 3 C 0.530 3.470 4 O -0.488 6.488 5 C -0.141 4.141 6 C 0.134 3.866 7 F -0.135 7.135 8 C -0.167 4.167 9 C -0.069 4.069 10 C -0.120 4.120 11 C 0.057 3.943 12 C -0.035 4.035 13 C -0.263 4.263 14 C 0.109 3.891 15 F -0.164 7.164 16 C -0.189 4.189 17 C 0.127 3.873 18 C -0.453 4.453 19 H 0.085 0.915 20 C 0.075 3.925 21 N -0.784 5.784 22 Si 0.912 3.088 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.258 1.258 26 C -0.195 4.195 27 H 0.060 0.940 28 H 0.067 0.933 29 H 0.101 0.899 30 H 0.140 0.860 31 H 0.139 0.861 32 H 0.144 0.856 33 H 0.114 0.886 34 H 0.131 0.869 35 H 0.285 0.715 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.497 -1.984 10.389 11.140 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.264 6.264 3 C 0.372 3.628 4 O -0.374 6.374 5 C -0.143 4.143 6 C 0.114 3.886 7 F -0.113 7.113 8 C -0.186 4.186 9 C -0.087 4.087 10 C -0.138 4.138 11 C 0.057 3.943 12 C -0.036 4.036 13 C -0.283 4.283 14 C 0.090 3.910 15 F -0.143 7.143 16 C -0.209 4.209 17 C 0.124 3.876 18 C -0.481 4.481 19 H 0.103 0.897 20 C -0.144 4.144 21 N -0.408 5.408 22 Si 0.736 3.264 23 H -0.192 1.192 24 H -0.199 1.199 25 H -0.182 1.182 26 C -0.215 4.215 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.120 0.880 30 H 0.158 0.842 31 H 0.157 0.843 32 H 0.162 0.838 33 H 0.132 0.868 34 H 0.149 0.851 35 H 0.096 0.904 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.145 -1.873 10.209 10.845 hybrid contribution -0.548 0.331 -0.488 0.804 sum 2.597 -1.541 9.721 10.180 Atomic orbital electron populations 1.23281 0.76208 1.03694 1.02649 1.86641 1.23468 1.32439 1.83868 1.20649 0.88445 0.81928 0.71794 1.90856 1.66271 1.36072 1.44241 1.19135 0.90263 1.11531 0.93399 1.17454 0.90166 1.01478 0.79462 1.91510 1.80860 1.93683 1.45279 1.20977 0.91245 1.06167 1.00209 1.21112 1.00429 0.96055 0.91113 1.21369 0.92619 1.00733 0.99094 1.18860 0.92861 0.91731 0.90882 1.17984 0.96743 0.97465 0.91366 1.20478 1.04404 1.05123 0.98337 1.17486 0.89389 0.88747 0.95400 1.91348 1.63699 1.63658 1.95589 1.21409 1.01884 0.98484 0.99158 1.17274 0.88268 0.90937 0.91153 1.19603 1.36949 1.01163 0.90389 0.89661 1.25981 0.92079 0.96314 1.00071 1.69795 1.32641 1.18900 1.19511 0.86239 0.79185 0.81567 0.79446 1.19232 1.19897 1.18210 1.21099 1.03830 1.01380 0.95150 0.92100 0.91378 0.88044 0.84176 0.84341 0.83840 0.86809 0.85096 0.90357 0.87607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.50 10.57 101.05 1.07 1.57 16 2 O -0.35 -6.15 8.74 -40.67 -0.36 -6.51 16 3 C 0.53 10.38 5.02 34.43 0.17 10.55 16 4 O -0.49 -10.66 16.90 -19.28 -0.33 -10.99 16 5 C -0.14 -2.55 5.75 -104.66 -0.60 -3.15 16 6 C 0.13 2.05 7.29 -38.97 -0.28 1.77 16 7 F -0.13 -2.08 16.83 2.25 0.04 -2.04 16 8 C -0.17 -2.00 10.00 -39.52 -0.40 -2.39 16 9 C -0.07 -0.78 10.02 -39.57 -0.40 -1.18 16 10 C -0.12 -1.74 9.49 -39.30 -0.37 -2.11 16 11 C 0.06 1.04 5.50 -104.54 -0.57 0.46 16 12 C -0.04 -0.76 5.11 -105.00 -0.54 -1.30 16 13 C -0.26 -5.95 8.35 -38.87 -0.32 -6.28 16 14 C 0.11 2.64 7.28 -39.55 -0.29 2.35 16 15 F -0.16 -3.81 17.26 2.25 0.04 -3.77 16 16 C -0.19 -4.84 8.66 -38.75 -0.34 -5.18 16 17 C 0.13 3.20 5.56 -106.88 -0.59 2.60 16 18 C -0.45 -11.22 9.05 -37.74 -0.34 -11.56 16 19 H 0.09 2.00 7.90 -52.49 -0.41 1.59 16 20 C 0.08 1.77 5.14 -17.35 -0.09 1.69 16 21 N -0.78 -19.28 10.96 55.55 0.61 -18.67 16 22 Si 0.91 17.62 29.59 -169.99 -5.03 12.58 16 23 H -0.27 -5.06 7.11 56.52 0.40 -4.66 16 24 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.26 -4.99 7.11 56.52 0.40 -4.58 16 26 C -0.20 -4.46 9.25 -38.49 -0.36 -4.82 16 27 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 1.04 8.14 -51.92 -0.42 0.62 16 29 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 30 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 31 H 0.14 1.06 8.06 -52.48 -0.42 0.64 16 32 H 0.14 1.92 8.04 -52.49 -0.42 1.50 16 33 H 0.11 2.44 5.91 -52.49 -0.31 2.13 16 34 H 0.13 3.47 6.18 -52.49 -0.32 3.15 16 35 H 0.29 6.37 8.30 -40.82 -0.34 6.03 16 36 H 0.11 2.22 8.04 -52.49 -0.42 1.80 16 LS Contribution 328.52 15.07 4.95 4.95 Total: -1.00 -28.73 328.52 -7.47 -36.20 By element: Atomic # 1 Polarization: 8.37 SS G_CDS: -3.14 Total: 5.23 kcal Atomic # 6 Polarization: -12.74 SS G_CDS: -4.25 Total: -16.99 kcal Atomic # 7 Polarization: -19.28 SS G_CDS: 0.61 Total: -18.67 kcal Atomic # 8 Polarization: -16.82 SS G_CDS: -0.68 Total: -17.50 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.08 Total: -5.81 kcal Atomic # 14 Polarization: 17.62 SS G_CDS: -5.03 Total: 12.58 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.73 -7.47 -36.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244347379.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.132 kcal (2) G-P(sol) polarization free energy of solvation -28.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds