Wall clock time and date at job start Tue Mar 31 2020 12:40:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45194 * 1 3 3 C 1.34764 * 117.00140 * 2 1 4 4 O 1.21514 * 119.99942 * 0.02562 * 3 2 1 5 5 C 1.47341 * 120.00016 * 180.02562 * 3 2 1 6 6 C 1.39836 * 120.23889 * 269.99935 * 5 3 2 7 7 F 1.35103 * 120.05411 * 359.97438 * 6 5 3 8 8 C 1.38264 * 119.89095 * 180.02562 * 6 5 3 9 9 C 1.38383 * 120.37883 * 0.02562 * 8 6 5 10 10 C 1.38124 * 120.49103 * 359.97438 * 9 8 6 11 11 C 1.39104 * 120.09543 * 0.25588 * 10 9 8 12 12 C 1.48212 * 120.18695 * 179.72150 * 11 10 9 13 13 C 1.39777 * 119.99436 * 130.00289 * 12 11 10 14 14 C 1.38597 * 120.34013 * 179.97438 * 13 12 11 15 15 F 1.35106 * 119.83084 * 180.02562 * 14 13 12 16 16 C 1.37956 * 120.34153 * 0.05472 * 14 13 12 17 17 C 1.40721 * 119.98502 * 359.96812 * 16 14 13 18 18 C 1.41429 * 120.16682 * 180.02562 * 17 16 14 19 19 H 1.07998 * 119.99920 * 154.70836 * 18 17 16 20 20 C 1.39926 * 120.00157 * 334.70772 * 18 17 16 21 21 N 1.30828 * 120.00077 * 342.86555 * 20 18 17 22 22 Si 1.86799 * 120.00146 * 162.86589 * 20 18 17 23 23 H 1.48502 * 109.46985 * 90.00243 * 22 20 18 24 24 H 1.48501 * 109.47347 * 209.99974 * 22 20 18 25 25 H 1.48498 * 109.47128 * 330.00205 * 22 20 18 26 26 C 1.38848 * 119.99668 * 309.72602 * 12 11 10 27 27 H 1.08997 * 109.47362 * 300.00129 * 1 2 3 28 28 H 1.09008 * 109.47308 * 59.99915 * 1 2 3 29 29 H 1.09003 * 109.47462 * 179.97438 * 1 2 3 30 30 H 1.08001 * 119.81072 * 180.02562 * 8 6 5 31 31 H 1.08007 * 119.75370 * 179.97438 * 9 8 6 32 32 H 1.08001 * 119.95151 * 179.97438 * 10 9 8 33 33 H 1.08000 * 119.83115 * 359.97438 * 13 12 11 34 34 H 1.07997 * 120.00624 * 179.97438 * 16 14 13 35 35 H 0.97003 * 120.00361 * 179.97438 * 21 20 18 36 36 H 1.07995 * 120.17225 * 0.02562 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4020 2.2199 0.0005 5 6 3.5352 1.2778 -0.0006 6 6 4.2389 1.3144 1.2072 7 9 3.5707 1.2797 2.3810 8 6 5.6196 1.3873 1.1983 9 6 6.3107 1.4248 0.0000 10 6 5.6314 1.3895 -1.2022 11 6 4.2422 1.3211 -1.2166 12 6 3.5109 1.2893 -2.5054 13 6 2.5361 0.3135 -2.7319 14 6 1.8476 0.2775 -3.9342 15 9 0.9070 -0.6698 -4.1419 16 6 2.1182 1.2036 -4.9202 17 6 3.0972 2.1918 -4.7074 18 6 3.3773 3.1435 -5.7154 19 1 3.7890 4.1060 -5.4499 20 6 3.1210 2.8380 -7.0566 21 7 2.9477 1.5940 -7.4227 22 14 3.0264 4.2065 -8.3246 23 1 4.3762 4.4465 -8.8954 24 1 2.0930 3.8119 -9.4101 25 1 2.5349 5.4488 -7.6764 26 6 3.7903 2.2323 -3.4855 27 1 -0.3634 0.5138 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 6.1618 1.4151 2.1319 31 1 7.3892 1.4822 0.0048 32 1 6.1795 1.4197 -2.1323 33 1 2.3182 -0.4161 -1.9660 34 1 1.5787 1.1703 -5.8552 35 1 2.7697 1.3822 -8.3524 36 1 4.5402 2.9899 -3.3118 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244347379.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:40:32 Heat of formation + Delta-G solvation = -149.611783 kcal Electronic energy + Delta-G solvation = -26087.103154 eV Core-core repulsion = 21943.223414 eV Total energy + Delta-G solvation = -4143.879741 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.15387 -49.65824 -41.80012 -40.13909 -38.85441 -37.59776 -35.78815 -33.39688 -32.26885 -31.61020 -29.81187 -28.74070 -27.46740 -25.44479 -24.43038 -22.89994 -22.33513 -21.96796 -19.73404 -19.11945 -18.41793 -18.08802 -18.03151 -17.51775 -17.04832 -16.81304 -16.64923 -16.50188 -16.41066 -16.30148 -16.07599 -15.08262 -14.75802 -14.64539 -14.54108 -14.16568 -14.07945 -13.65782 -13.41751 -13.23782 -13.02852 -12.89481 -12.87196 -12.65590 -12.50205 -12.18278 -12.04797 -11.92819 -11.75378 -11.56950 -11.13712 -10.29137 -9.96454 -9.51283 -9.17594 -8.75510 -6.52121 -0.30478 -0.06252 0.66531 0.83909 0.86508 1.38650 1.45929 1.54354 1.59824 2.16369 2.39953 2.57188 2.92948 3.40505 3.47042 3.55734 3.75622 3.97410 4.03849 4.16908 4.21885 4.23120 4.41279 4.46802 4.57261 4.65911 4.74914 4.82904 4.95106 4.97733 5.07826 5.16893 5.20632 5.33735 5.48093 5.62634 5.70317 5.74591 5.85957 6.12119 6.43073 6.46950 6.75516 6.76155 8.21064 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015464 B = 0.004414 C = 0.003781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.177749 B = 6342.129242 C = 7403.310099 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.525 3.475 4 O -0.525 6.525 5 C -0.166 4.166 6 C 0.121 3.879 7 F -0.139 7.139 8 C -0.141 4.141 9 C -0.045 4.045 10 C -0.117 4.117 11 C 0.022 3.978 12 C -0.024 4.024 13 C -0.269 4.269 14 C 0.098 3.902 15 F -0.163 7.163 16 C -0.220 4.220 17 C 0.104 3.896 18 C -0.481 4.481 19 H 0.092 0.908 20 C 0.036 3.964 21 N -0.816 5.816 22 Si 0.986 3.014 23 H -0.255 1.255 24 H -0.269 1.269 25 H -0.258 1.258 26 C -0.205 4.205 27 H 0.073 0.927 28 H 0.049 0.951 29 H 0.137 0.863 30 H 0.184 0.816 31 H 0.191 0.809 32 H 0.153 0.847 33 H 0.122 0.878 34 H 0.112 0.888 35 H 0.293 0.707 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.172 -1.535 11.888 13.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.369 3.631 4 O -0.414 6.414 5 C -0.168 4.168 6 C 0.101 3.899 7 F -0.118 7.118 8 C -0.159 4.159 9 C -0.062 4.062 10 C -0.135 4.135 11 C 0.022 3.978 12 C -0.025 4.025 13 C -0.289 4.289 14 C 0.079 3.921 15 F -0.142 7.142 16 C -0.240 4.240 17 C 0.101 3.899 18 C -0.509 4.509 19 H 0.110 0.890 20 C -0.181 4.181 21 N -0.441 5.441 22 Si 0.805 3.195 23 H -0.179 1.179 24 H -0.194 1.194 25 H -0.181 1.181 26 C -0.224 4.224 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.155 0.845 30 H 0.201 0.799 31 H 0.208 0.792 32 H 0.171 0.829 33 H 0.140 0.860 34 H 0.130 0.870 35 H 0.104 0.896 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.823 -1.455 11.724 13.171 hybrid contribution -1.333 0.107 -0.793 1.554 sum 4.491 -1.348 10.931 11.894 Atomic orbital electron populations 1.23591 0.74582 1.06018 1.02385 1.86632 1.25215 1.31781 1.83308 1.21174 0.89465 0.81797 0.70642 1.90819 1.67311 1.37144 1.46161 1.19210 0.89360 1.13536 0.94697 1.17721 0.91448 1.02274 0.78409 1.91500 1.81288 1.93793 1.45173 1.21534 0.89555 1.02458 1.02365 1.21648 1.02698 0.92692 0.89194 1.21598 0.90948 0.99793 1.01195 1.18732 0.94370 0.95663 0.89053 1.18302 0.95691 0.95754 0.92715 1.20655 1.04721 1.05783 0.97732 1.17681 0.89742 0.88704 0.95937 1.91331 1.63704 1.63531 1.95668 1.21309 1.03329 1.00260 0.99126 1.17629 0.88578 0.91192 0.92530 1.19911 1.38183 1.01477 0.91319 0.89046 1.26866 0.90961 0.98542 1.01690 1.69858 1.32942 1.20876 1.20412 0.85141 0.79641 0.78080 0.76590 1.17948 1.19357 1.18125 1.21300 1.04163 1.02105 0.94873 0.90812 0.93235 0.84453 0.79880 0.79166 0.82941 0.85965 0.86973 0.89649 0.85987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.77 10.57 113.37 1.20 1.97 16 2 O -0.35 -12.68 8.74 -56.75 -0.50 -13.17 16 3 C 0.53 20.97 5.02 70.22 0.35 21.33 16 4 O -0.53 -23.77 16.90 19.79 0.33 -23.44 16 5 C -0.17 -5.89 5.75 -19.89 -0.11 -6.00 16 6 C 0.12 3.41 7.29 22.66 0.17 3.58 16 7 F -0.14 -4.03 16.83 44.97 0.76 -3.28 16 8 C -0.14 -2.64 10.00 22.31 0.22 -2.42 16 9 C -0.04 -0.77 10.02 22.28 0.22 -0.55 16 10 C -0.12 -3.05 9.49 22.45 0.21 -2.83 16 11 C 0.02 0.79 5.50 -19.81 -0.11 0.68 16 12 C -0.02 -1.07 5.11 -20.11 -0.10 -1.17 16 13 C -0.27 -12.57 8.35 22.73 0.19 -12.38 16 14 C 0.10 5.01 7.28 22.29 0.16 5.17 16 15 F -0.16 -7.94 17.26 44.97 0.78 -7.17 16 16 C -0.22 -11.91 8.66 22.81 0.20 -11.71 16 17 C 0.10 5.45 5.56 -21.33 -0.12 5.33 16 18 C -0.48 -24.54 9.05 23.46 0.21 -24.32 16 19 H 0.09 4.38 7.90 -2.91 -0.02 4.36 16 20 C 0.04 1.74 5.14 85.25 0.44 2.18 16 21 N -0.82 -41.42 10.96 21.82 0.24 -41.18 16 22 Si 0.99 36.22 29.59 68.60 2.03 38.25 16 23 H -0.26 -8.84 7.11 99.48 0.71 -8.14 16 24 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 25 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 26 C -0.21 -9.61 9.25 22.98 0.21 -9.40 16 27 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 28 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 29 H 0.14 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.18 1.94 8.06 -2.91 -0.02 1.91 16 31 H 0.19 1.42 8.06 -2.91 -0.02 1.40 16 32 H 0.15 3.65 8.04 -2.91 -0.02 3.62 16 33 H 0.12 5.39 5.91 -2.91 -0.02 5.38 16 34 H 0.11 6.37 6.18 -2.91 -0.02 6.35 16 35 H 0.29 13.39 8.30 -92.71 -0.77 12.62 16 36 H 0.12 5.15 8.04 -2.91 -0.02 5.12 16 Total: -1.00 -67.28 328.52 8.13 -59.15 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 1.14 Total: 21.38 kcal Atomic # 6 Polarization: -33.90 SS G_CDS: 3.34 Total: -30.56 kcal Atomic # 7 Polarization: -41.42 SS G_CDS: 0.24 Total: -41.18 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -0.16 Total: -36.61 kcal Atomic # 9 Polarization: -11.98 SS G_CDS: 1.53 Total: -10.44 kcal Atomic # 14 Polarization: 36.22 SS G_CDS: 2.03 Total: 38.25 kcal Total: -67.28 8.13 -59.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244347379.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.461 kcal (2) G-P(sol) polarization free energy of solvation -67.276 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds