Wall clock time and date at job start Tue Mar 31 2020 12:39:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34720 * 116.99918 * 2 1 4 4 O 1.21484 * 120.00498 * 359.97438 * 3 2 1 5 5 C 1.47585 * 119.99730 * 179.97438 * 3 2 1 6 6 C 1.39815 * 120.10314 * 359.97438 * 5 3 2 7 7 C 1.38007 * 120.17766 * 180.02562 * 6 5 3 8 8 C 1.38134 * 120.39679 * 0.02562 * 7 6 5 9 9 C 1.39617 * 120.19527 * 359.97438 * 8 7 6 10 10 C 1.47854 * 120.09204 * 179.97438 * 9 8 7 11 11 C 1.39074 * 120.32153 * 64.99623 * 10 9 8 12 12 C 1.38372 * 119.95409 * 180.02562 * 11 10 9 13 13 F 1.35108 * 119.69300 * 179.97438 * 12 11 10 14 14 C 1.39228 * 120.61728 * 359.97438 * 12 11 10 15 15 C 1.36344 * 120.65029 * 0.02562 * 14 12 11 16 16 C 1.40784 * 120.02350 * 359.97438 * 15 14 12 17 17 C 1.40813 * 120.30501 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00012 * 205.37988 * 17 16 15 19 19 C 1.40037 * 119.99816 * 25.37141 * 17 16 15 20 20 N 1.30804 * 119.99856 * 15.52908 * 19 17 16 21 21 Si 1.86801 * 119.99933 * 195.52810 * 19 17 16 22 22 H 1.48495 * 109.47186 * 60.00050 * 21 19 17 23 23 H 1.48504 * 109.46685 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46947 * 299.99920 * 21 19 17 25 25 C 1.39654 * 120.09924 * 180.27430 * 5 3 2 26 26 F 1.35095 * 120.19079 * 359.97438 * 25 5 3 27 27 H 1.09002 * 109.46837 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46917 * 300.00461 * 1 2 3 29 29 H 1.09001 * 109.46875 * 60.00868 * 1 2 3 30 30 H 1.07999 * 119.90950 * 0.04096 * 6 5 3 31 31 H 1.08004 * 119.80493 * 180.02562 * 7 6 5 32 32 H 1.07995 * 119.90293 * 180.02562 * 8 7 6 33 33 H 1.07997 * 120.01903 * 0.29841 * 11 10 9 34 34 H 1.07991 * 119.67267 * 180.02562 * 14 12 11 35 35 H 1.08003 * 119.98675 * 180.02562 * 15 14 12 36 36 H 0.97007 * 120.00244 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4021 2.2193 -0.0005 5 6 3.5375 1.2776 0.0006 6 6 4.3010 0.1063 0.0017 7 6 5.6793 0.1767 0.0027 8 6 6.3165 1.4023 0.0033 9 6 5.5698 2.5820 0.0022 10 6 6.2543 3.8926 0.0034 11 6 7.0308 4.2801 -1.0834 12 6 7.6684 5.5081 -1.0740 13 9 8.4219 5.8790 -2.1324 14 6 7.5409 6.3651 0.0158 15 6 6.7859 6.0103 1.0943 16 6 6.1253 4.7673 1.1135 17 6 5.3444 4.3947 2.2245 18 1 5.1814 3.3499 2.4439 19 6 4.7795 5.3789 3.0450 20 7 4.7118 6.6172 2.6291 21 14 4.1226 4.9234 4.7333 22 1 5.2218 4.3580 5.5562 23 1 3.5800 6.1361 5.3970 24 1 3.0431 3.9140 4.5885 25 6 4.1737 2.5208 0.0064 26 9 3.4437 3.6575 0.0109 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 3.8109 -0.8560 0.0014 31 1 6.2632 -0.7319 0.0031 32 1 7.3955 1.4481 0.0037 33 1 7.1324 3.6249 -1.9359 34 1 8.0448 7.3201 0.0068 35 1 6.6939 6.6836 1.9338 36 1 4.3202 7.2990 3.1972 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244547650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:43 Heat of formation + Delta-G solvation = -133.900939 kcal Electronic energy + Delta-G solvation = -26177.841952 eV Core-core repulsion = 22034.643485 eV Total energy + Delta-G solvation = -4143.198467 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.07488 -47.52915 -40.21965 -38.63931 -37.17611 -36.20402 -33.79999 -32.16629 -30.66580 -29.54933 -28.53423 -27.61320 -25.22773 -23.93101 -22.72303 -21.35508 -20.74650 -20.16370 -17.76205 -17.42608 -17.13003 -16.47856 -16.27979 -16.06973 -15.52279 -15.49145 -14.86974 -14.53519 -14.44297 -14.27250 -14.17507 -13.72864 -13.17518 -13.12136 -12.72233 -12.52667 -12.31298 -12.18003 -12.05498 -11.74164 -11.69019 -11.38465 -11.20551 -11.09210 -10.92377 -10.73534 -10.48877 -10.22310 -10.13167 -9.65430 -9.31579 -8.76572 -8.30038 -7.67428 -7.44365 -6.97575 -4.56106 0.90700 1.52532 2.48124 2.63134 2.74537 2.83891 2.97340 3.00055 3.06532 3.79176 3.96222 4.36511 4.62845 4.81891 5.08645 5.10267 5.16820 5.24013 5.35756 5.43714 5.46011 5.58518 5.80831 5.96042 6.02900 6.18435 6.32386 6.39727 6.46556 6.58808 6.68237 6.80174 6.88802 7.01653 7.15523 7.26421 7.49657 7.70364 7.78404 7.91057 7.99370 8.33158 8.60161 8.67222 9.93963 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.005910 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.424558 B = 4736.300024 C = 6341.930168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.508 3.492 4 O -0.492 6.492 5 C -0.179 4.179 6 C -0.057 4.057 7 C -0.151 4.151 8 C -0.059 4.059 9 C -0.026 4.026 10 C -0.184 4.184 11 C -0.087 4.087 12 C -0.050 4.050 13 F -0.173 7.173 14 C -0.121 4.121 15 C -0.135 4.135 16 C 0.129 3.871 17 C -0.436 4.436 18 H 0.080 0.920 19 C 0.078 3.922 20 N -0.776 5.776 21 Si 0.908 3.092 22 H -0.260 1.260 23 H -0.274 1.274 24 H -0.262 1.262 25 C 0.188 3.812 26 F -0.097 7.097 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.062 0.938 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.131 0.869 36 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.499 -11.526 -1.189 11.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.352 3.648 4 O -0.380 6.380 5 C -0.182 4.182 6 C -0.075 4.075 7 C -0.169 4.169 8 C -0.077 4.077 9 C -0.027 4.027 10 C -0.186 4.186 11 C -0.106 4.106 12 C -0.069 4.069 13 F -0.153 7.153 14 C -0.140 4.140 15 C -0.154 4.154 16 C 0.126 3.874 17 C -0.464 4.464 18 H 0.098 0.902 19 C -0.143 4.143 20 N -0.399 5.399 21 Si 0.732 3.268 22 H -0.184 1.184 23 H -0.199 1.199 24 H -0.186 1.186 25 C 0.167 3.833 26 F -0.075 7.075 27 H 0.118 0.882 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.155 0.845 31 H 0.148 0.852 32 H 0.152 0.848 33 H 0.121 0.879 34 H 0.120 0.880 35 H 0.149 0.851 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -2.856 -10.905 -1.149 11.331 hybrid contribution -0.657 0.270 0.571 0.912 sum -3.513 -10.635 -0.578 11.216 Atomic orbital electron populations 1.23230 0.76399 1.03359 1.02660 1.86518 1.23207 1.32866 1.84945 1.21040 0.88894 0.81482 0.73334 1.90910 1.66543 1.35657 1.44879 1.19022 0.89401 0.93951 1.15777 1.21153 0.93722 0.96670 0.95964 1.20982 0.94004 0.97936 1.03950 1.21522 1.00439 0.90725 0.95054 1.18719 0.89791 0.94670 0.99554 1.17983 1.08480 0.95620 0.96507 1.20427 0.97781 0.94779 0.97581 1.17111 1.04966 0.97216 0.87650 1.91292 1.75525 1.92211 1.56224 1.20516 1.01161 0.98185 0.94128 1.20989 0.97587 0.98616 0.98200 1.17510 0.89307 0.90318 0.90291 1.19490 1.25218 0.94414 1.07255 0.90214 1.25974 0.94093 0.94350 0.99848 1.69755 1.31437 1.02367 1.36339 0.86332 0.80090 0.79395 0.81032 1.18405 1.19903 1.18639 1.17967 0.89002 0.80844 0.95446 1.91633 1.76445 1.47642 1.91731 0.88193 0.91904 0.91941 0.84482 0.85155 0.84769 0.87866 0.88027 0.85133 0.90177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.57 101.05 1.07 1.47 16 2 O -0.36 -5.11 9.81 -40.55 -0.40 -5.51 16 3 C 0.51 9.12 7.89 34.54 0.27 9.40 16 4 O -0.49 -10.42 15.12 -19.25 -0.29 -10.71 16 5 C -0.18 -3.21 5.87 -104.97 -0.62 -3.83 16 6 C -0.06 -0.80 9.61 -39.08 -0.38 -1.17 16 7 C -0.15 -1.99 10.01 -39.70 -0.40 -2.38 16 8 C -0.06 -0.94 9.73 -39.11 -0.38 -1.33 16 9 C -0.03 -0.53 4.39 -104.88 -0.46 -0.99 16 10 C -0.18 -4.22 5.06 -104.24 -0.53 -4.74 16 11 C -0.09 -1.92 9.70 -39.22 -0.38 -2.30 16 12 C -0.05 -1.14 7.31 -39.16 -0.29 -1.43 16 13 F -0.17 -3.84 17.26 2.25 0.04 -3.80 16 14 C -0.12 -2.78 9.94 -39.90 -0.40 -3.18 16 15 C -0.13 -3.30 8.62 -39.30 -0.34 -3.64 16 16 C 0.13 3.21 5.46 -106.55 -0.58 2.63 16 17 C -0.44 -10.86 7.47 -37.93 -0.28 -11.14 16 18 H 0.08 1.95 7.07 -52.49 -0.37 1.58 16 19 C 0.08 1.88 5.18 -17.32 -0.09 1.79 16 20 N -0.78 -19.12 10.87 55.55 0.60 -18.52 16 21 Si 0.91 18.27 29.59 -169.99 -5.03 13.24 16 22 H -0.26 -5.07 7.11 56.52 0.40 -4.67 16 23 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 24 H -0.26 -5.39 7.11 56.52 0.40 -4.99 16 25 C 0.19 3.96 6.46 -38.49 -0.25 3.71 16 26 F -0.10 -2.40 14.40 2.25 0.03 -2.36 16 27 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.14 1.53 7.60 -52.49 -0.40 1.13 16 31 H 0.13 1.25 8.06 -52.48 -0.42 0.83 16 32 H 0.13 1.91 8.06 -52.49 -0.42 1.48 16 33 H 0.10 2.04 8.06 -52.49 -0.42 1.61 16 34 H 0.10 2.11 8.06 -52.49 -0.42 1.69 16 35 H 0.13 3.24 6.12 -52.48 -0.32 2.92 16 36 H 0.29 6.45 8.30 -40.82 -0.34 6.11 16 LS Contribution 327.37 15.07 4.93 4.93 Total: -1.00 -29.00 327.37 -7.32 -36.32 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -3.18 Total: 3.54 kcal Atomic # 6 Polarization: -13.12 SS G_CDS: -4.02 Total: -17.14 kcal Atomic # 7 Polarization: -19.12 SS G_CDS: 0.60 Total: -18.52 kcal Atomic # 8 Polarization: -15.52 SS G_CDS: -0.69 Total: -16.21 kcal Atomic # 9 Polarization: -6.23 SS G_CDS: 0.07 Total: -6.16 kcal Atomic # 14 Polarization: 18.27 SS G_CDS: -5.03 Total: 13.24 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.00 -7.32 -36.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244547650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.580 kcal (2) G-P(sol) polarization free energy of solvation -29.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds