Wall clock time and date at job start Tue Mar 31 2020 12:39:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34720 * 116.99918 * 2 1 4 4 O 1.21484 * 120.00498 * 359.97438 * 3 2 1 5 5 C 1.47585 * 119.99730 * 179.97438 * 3 2 1 6 6 C 1.39815 * 120.10314 * 359.97438 * 5 3 2 7 7 C 1.38007 * 120.17766 * 180.02562 * 6 5 3 8 8 C 1.38134 * 120.39679 * 0.02562 * 7 6 5 9 9 C 1.39617 * 120.19527 * 359.97438 * 8 7 6 10 10 C 1.47854 * 120.09204 * 179.97438 * 9 8 7 11 11 C 1.39074 * 120.32153 * 64.99623 * 10 9 8 12 12 C 1.38372 * 119.95409 * 180.02562 * 11 10 9 13 13 F 1.35108 * 119.69300 * 179.97438 * 12 11 10 14 14 C 1.39228 * 120.61728 * 359.97438 * 12 11 10 15 15 C 1.36344 * 120.65029 * 0.02562 * 14 12 11 16 16 C 1.40784 * 120.02350 * 359.97438 * 15 14 12 17 17 C 1.40813 * 120.30501 * 179.97438 * 16 15 14 18 18 H 1.07996 * 120.00012 * 205.37988 * 17 16 15 19 19 C 1.40037 * 119.99816 * 25.37141 * 17 16 15 20 20 N 1.30804 * 119.99856 * 15.52908 * 19 17 16 21 21 Si 1.86801 * 119.99933 * 195.52810 * 19 17 16 22 22 H 1.48495 * 109.47186 * 60.00050 * 21 19 17 23 23 H 1.48504 * 109.46685 * 180.02562 * 21 19 17 24 24 H 1.48495 * 109.46947 * 299.99920 * 21 19 17 25 25 C 1.39654 * 120.09924 * 180.27430 * 5 3 2 26 26 F 1.35095 * 120.19079 * 359.97438 * 25 5 3 27 27 H 1.09002 * 109.46837 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46917 * 300.00461 * 1 2 3 29 29 H 1.09001 * 109.46875 * 60.00868 * 1 2 3 30 30 H 1.07999 * 119.90950 * 0.04096 * 6 5 3 31 31 H 1.08004 * 119.80493 * 180.02562 * 7 6 5 32 32 H 1.07995 * 119.90293 * 180.02562 * 8 7 6 33 33 H 1.07997 * 120.01903 * 0.29841 * 11 10 9 34 34 H 1.07991 * 119.67267 * 180.02562 * 14 12 11 35 35 H 1.08003 * 119.98675 * 180.02562 * 15 14 12 36 36 H 0.97007 * 120.00244 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2004 0.0000 4 8 1.4021 2.2193 -0.0005 5 6 3.5375 1.2776 0.0006 6 6 4.3010 0.1063 0.0017 7 6 5.6793 0.1767 0.0027 8 6 6.3165 1.4023 0.0033 9 6 5.5698 2.5820 0.0022 10 6 6.2543 3.8926 0.0034 11 6 7.0308 4.2801 -1.0834 12 6 7.6684 5.5081 -1.0740 13 9 8.4219 5.8790 -2.1324 14 6 7.5409 6.3651 0.0158 15 6 6.7859 6.0103 1.0943 16 6 6.1253 4.7673 1.1135 17 6 5.3444 4.3947 2.2245 18 1 5.1814 3.3499 2.4439 19 6 4.7795 5.3789 3.0450 20 7 4.7118 6.6172 2.6291 21 14 4.1226 4.9234 4.7333 22 1 5.2218 4.3580 5.5562 23 1 3.5800 6.1361 5.3970 24 1 3.0431 3.9140 4.5885 25 6 4.1737 2.5208 0.0064 26 9 3.4437 3.6575 0.0109 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 3.8109 -0.8560 0.0014 31 1 6.2632 -0.7319 0.0031 32 1 7.3955 1.4481 0.0037 33 1 7.1324 3.6249 -1.9359 34 1 8.0448 7.3201 0.0068 35 1 6.6939 6.6836 1.9338 36 1 4.3202 7.2990 3.1972 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244547650.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:42 Heat of formation + Delta-G solvation = -147.758430 kcal Electronic energy + Delta-G solvation = -26178.442858 eV Core-core repulsion = 22034.643485 eV Total energy + Delta-G solvation = -4143.799373 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.71922 -49.33049 -41.52138 -40.11523 -38.75851 -37.50689 -35.59653 -33.67579 -32.00520 -31.35121 -30.08780 -28.62913 -27.02321 -25.22004 -24.23285 -23.07287 -22.17780 -21.67896 -19.42195 -19.01319 -18.48658 -17.81901 -17.73861 -17.51896 -17.24786 -16.90123 -16.54517 -16.16566 -16.07303 -15.93090 -15.64257 -15.05731 -14.63904 -14.39159 -14.24255 -14.07931 -14.00703 -13.83927 -13.30612 -13.18377 -13.06922 -12.87134 -12.80040 -12.61564 -12.44597 -12.25137 -11.86287 -11.85764 -11.62889 -11.36819 -11.10417 -10.12891 -9.76799 -9.38320 -9.24069 -8.75471 -6.41697 -0.41375 0.16127 0.73835 0.88225 1.31281 1.40684 1.43290 1.44125 1.58453 2.12227 2.54557 2.68038 3.26707 3.48556 3.63505 3.74759 4.01471 4.06644 4.20142 4.24933 4.30650 4.31117 4.37763 4.43124 4.66986 4.85251 4.95721 5.02839 5.08134 5.12819 5.19125 5.21007 5.32801 5.38076 5.49753 5.66578 5.84374 5.89268 5.96504 6.18413 6.49699 6.61002 6.77243 6.84744 8.18419 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010675 B = 0.005910 C = 0.004414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2622.424558 B = 4736.300024 C = 6341.930168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.508 3.492 4 O -0.537 6.537 5 C -0.192 4.192 6 C -0.034 4.034 7 C -0.126 4.126 8 C -0.051 4.051 9 C -0.058 4.058 10 C -0.179 4.179 11 C -0.090 4.090 12 C -0.059 4.059 13 F -0.168 7.168 14 C -0.125 4.125 15 C -0.157 4.157 16 C 0.102 3.898 17 C -0.456 4.456 18 H 0.075 0.925 19 C 0.038 3.962 20 N -0.809 5.809 21 Si 0.969 3.031 22 H -0.247 1.247 23 H -0.264 1.264 24 H -0.270 1.270 25 C 0.146 3.854 26 F -0.135 7.135 27 H 0.146 0.854 28 H 0.056 0.944 29 H 0.060 0.940 30 H 0.178 0.822 31 H 0.185 0.815 32 H 0.154 0.846 33 H 0.128 0.872 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.109 -15.402 -1.141 15.587 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.262 6.262 3 C 0.355 3.645 4 O -0.428 6.428 5 C -0.194 4.194 6 C -0.052 4.052 7 C -0.143 4.143 8 C -0.069 4.069 9 C -0.059 4.059 10 C -0.180 4.180 11 C -0.109 4.109 12 C -0.079 4.079 13 F -0.148 7.148 14 C -0.144 4.144 15 C -0.176 4.176 16 C 0.099 3.901 17 C -0.484 4.484 18 H 0.093 0.907 19 C -0.179 4.179 20 N -0.434 5.434 21 Si 0.790 3.210 22 H -0.170 1.170 23 H -0.188 1.188 24 H -0.195 1.195 25 C 0.126 3.874 26 F -0.113 7.113 27 H 0.164 0.836 28 H 0.075 0.925 29 H 0.079 0.921 30 H 0.195 0.805 31 H 0.203 0.797 32 H 0.172 0.828 33 H 0.146 0.854 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.450 -14.806 -1.112 15.048 hybrid contribution -0.790 1.276 0.424 1.559 sum -3.240 -13.530 -0.688 13.930 Atomic orbital electron populations 1.23628 0.74249 1.06217 1.02354 1.86497 1.25190 1.30501 1.84041 1.21199 0.89120 0.81864 0.72315 1.90889 1.67484 1.37377 1.47096 1.19234 0.89856 0.94082 1.16223 1.21688 0.94133 0.96643 0.92705 1.21538 0.93838 0.98563 1.00368 1.21830 1.01324 0.90314 0.93449 1.18765 0.89693 0.94896 1.02541 1.18335 1.07336 0.96699 0.95657 1.20701 0.97272 0.94846 0.98108 1.17271 1.05273 0.97629 0.87739 1.91296 1.75399 1.92217 1.55874 1.20683 1.00910 0.98989 0.93859 1.20955 0.98992 0.99016 0.98665 1.17870 0.89817 0.91097 0.91350 1.19569 1.26192 0.94381 1.08233 0.90719 1.26746 0.94083 0.94146 1.02942 1.69806 1.32637 1.03279 1.37634 0.85429 0.79415 0.79151 0.77034 1.17014 1.18759 1.19537 1.18380 0.89502 0.80988 0.98551 1.91526 1.77350 1.49782 1.92648 0.83623 0.92515 0.92135 0.80483 0.79750 0.82809 0.85411 0.86364 0.86275 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.57 113.37 1.20 1.74 16 2 O -0.35 -9.03 9.81 -56.30 -0.55 -9.58 16 3 C 0.51 18.04 7.89 70.29 0.55 18.59 16 4 O -0.54 -23.53 15.12 19.89 0.30 -23.23 16 5 C -0.19 -6.66 5.87 -20.09 -0.12 -6.77 16 6 C -0.03 -0.80 9.61 22.60 0.22 -0.58 16 7 C -0.13 -2.63 10.01 22.19 0.22 -2.41 16 8 C -0.05 -1.48 9.73 22.58 0.22 -1.26 16 9 C -0.06 -2.33 4.39 -20.03 -0.09 -2.42 16 10 C -0.18 -8.33 5.06 -19.62 -0.10 -8.43 16 11 C -0.09 -4.00 9.70 22.50 0.22 -3.78 16 12 C -0.06 -2.74 7.31 22.54 0.16 -2.58 16 13 F -0.17 -7.38 17.26 44.97 0.78 -6.60 16 14 C -0.13 -5.93 9.94 22.07 0.22 -5.71 16 15 C -0.16 -8.05 8.62 22.45 0.19 -7.86 16 16 C 0.10 5.27 5.46 -21.11 -0.12 5.16 16 17 C -0.46 -23.68 7.47 23.34 0.17 -23.51 16 18 H 0.07 3.81 7.07 -2.91 -0.02 3.79 16 19 C 0.04 1.91 5.18 85.28 0.44 2.35 16 20 N -0.81 -41.83 10.87 21.84 0.24 -41.60 16 21 Si 0.97 38.34 29.59 68.60 2.03 40.37 16 22 H -0.25 -9.13 7.11 99.48 0.71 -8.42 16 23 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 24 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 25 C 0.15 6.27 6.46 22.98 0.15 6.41 16 26 F -0.13 -7.11 14.40 44.97 0.65 -6.46 16 27 H 0.15 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.18 2.82 7.60 -2.91 -0.02 2.80 16 31 H 0.19 2.03 8.06 -2.91 -0.02 2.01 16 32 H 0.15 3.80 8.06 -2.91 -0.02 3.77 16 33 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 34 H 0.12 5.02 8.06 -2.92 -0.02 5.00 16 35 H 0.12 6.27 6.12 -2.91 -0.02 6.26 16 36 H 0.29 13.74 8.30 -92.70 -0.77 12.97 16 Total: -1.00 -68.84 327.37 8.13 -60.71 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: 1.14 Total: 17.44 kcal Atomic # 6 Polarization: -34.60 SS G_CDS: 3.55 Total: -31.05 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.24 Total: -41.60 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.25 Total: -32.81 kcal Atomic # 9 Polarization: -14.49 SS G_CDS: 1.42 Total: -13.06 kcal Atomic # 14 Polarization: 38.34 SS G_CDS: 2.03 Total: 40.37 kcal Total: -68.84 8.13 -60.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244547650.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.052 kcal (2) G-P(sol) polarization free energy of solvation -68.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.758 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds