Wall clock time and date at job start Tue Mar 31 2020 12:39:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34726 * 117.00400 * 2 1 4 4 O 1.21494 * 119.99766 * 0.02562 * 3 2 1 5 5 C 1.47579 * 120.00116 * 179.97438 * 3 2 1 6 6 C 1.39807 * 120.10473 * 0.02562 * 5 3 2 7 7 C 1.38008 * 120.17990 * 180.02562 * 6 5 3 8 8 C 1.38133 * 120.39541 * 359.97438 * 7 6 5 9 9 C 1.39617 * 120.19653 * 359.97438 * 8 7 6 10 10 C 1.47856 * 120.09267 * 180.02562 * 9 8 7 11 11 C 1.39074 * 120.26252 * 64.99470 * 10 9 8 12 12 C 1.38131 * 120.17114 * 180.02562 * 11 10 9 13 13 C 1.38817 * 120.72157 * 0.02562 * 12 11 10 14 14 C 1.37730 * 120.52213 * 359.95528 * 13 12 11 15 15 F 1.35102 * 120.09845 * 180.02562 * 14 13 12 16 16 C 1.41030 * 119.80003 * 0.27478 * 14 13 12 17 17 C 1.40788 * 120.34396 * 179.72467 * 16 14 13 18 18 H 1.08000 * 119.99611 * 136.18780 * 17 16 14 19 19 C 1.40063 * 120.00170 * 316.18575 * 17 16 14 20 20 N 1.30796 * 120.00037 * 160.92973 * 19 17 16 21 21 Si 1.86796 * 120.00078 * 340.92958 * 19 17 16 22 22 H 1.48499 * 109.47348 * 95.26558 * 21 19 17 23 23 H 1.48504 * 109.47205 * 215.26923 * 21 19 17 24 24 H 1.48504 * 109.47124 * 335.26476 * 21 19 17 25 25 C 1.39645 * 120.09734 * 180.25484 * 5 3 2 26 26 F 1.35100 * 120.19935 * 359.97438 * 25 5 3 27 27 H 1.09001 * 109.47122 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47255 * 300.00148 * 1 2 3 29 29 H 1.09007 * 109.46736 * 59.99742 * 1 2 3 30 30 H 1.08001 * 119.91179 * 0.04511 * 6 5 3 31 31 H 1.08006 * 119.80295 * 179.97438 * 7 6 5 32 32 H 1.07993 * 119.90559 * 180.02562 * 8 7 6 33 33 H 1.07997 * 119.91867 * 0.02562 * 11 10 9 34 34 H 1.07999 * 119.63848 * 179.97438 * 12 11 10 35 35 H 1.08004 * 119.73699 * 179.97438 * 13 12 11 36 36 H 0.96994 * 120.00172 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5375 1.2775 0.0006 6 6 4.3010 0.1064 0.0006 7 6 5.6793 0.1767 0.0016 8 6 6.3165 1.4023 0.0022 9 6 5.5699 2.5820 0.0011 10 6 6.2544 3.8926 0.0011 11 6 7.0298 4.2783 -1.0870 12 6 7.6688 5.5029 -1.0848 13 6 7.5487 6.3636 -0.0023 14 6 6.7879 6.0112 1.0904 15 9 6.6765 6.8556 2.1391 16 6 6.1298 4.7641 1.1135 17 6 5.3539 4.3898 2.2271 18 1 4.3876 3.9299 2.0818 19 6 5.8352 4.6140 3.5232 20 7 5.0070 4.6252 4.5355 21 14 7.6598 4.8969 3.8061 22 1 7.9352 6.3557 3.8393 23 1 8.0604 4.2879 5.0999 24 1 8.4344 4.2718 2.7040 25 6 4.1736 2.5207 0.0059 26 9 3.4437 3.6575 0.0101 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.8109 -0.8560 -0.0006 31 1 6.2632 -0.7319 0.0021 32 1 7.3955 1.4481 0.0026 33 1 7.1326 3.6188 -1.9360 34 1 8.2692 5.7936 -1.9342 35 1 8.0556 7.3171 -0.0172 36 1 5.3401 4.7807 5.4330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244548835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:49 Heat of formation + Delta-G solvation = -122.589975 kcal Electronic energy + Delta-G solvation = -26454.067836 eV Core-core repulsion = 22311.359849 eV Total energy + Delta-G solvation = -4142.707987 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -48.24176 -47.71579 -40.22548 -38.70840 -37.23004 -36.20483 -33.69646 -32.23821 -30.82559 -30.17230 -28.47797 -27.59850 -25.37583 -23.97991 -22.74513 -21.31640 -20.76937 -20.23661 -17.95567 -17.62181 -17.17112 -16.54393 -16.27852 -16.04160 -15.71739 -15.48711 -15.15171 -14.68599 -14.55848 -14.41619 -14.07936 -13.81637 -13.22383 -13.19468 -12.96580 -12.67300 -12.36827 -12.22204 -12.01406 -11.84480 -11.68934 -11.51241 -11.34848 -11.00537 -10.72606 -10.69740 -10.44730 -10.27762 -10.16473 -9.69954 -9.20506 -8.81269 -8.39667 -7.66182 -7.61535 -6.97411 -4.61026 0.88228 1.45618 2.22431 2.36368 2.73013 2.79231 3.14796 3.17782 3.24045 3.91221 3.97264 4.33152 4.56689 4.80151 4.95759 5.09526 5.11151 5.18747 5.18923 5.38526 5.43147 5.55052 5.61774 5.75716 5.91267 6.09511 6.17231 6.27177 6.32009 6.42076 6.52108 6.57771 6.66982 6.97461 7.05828 7.14108 7.29312 7.40984 7.50157 7.86032 7.90381 8.23814 8.43604 8.63711 10.02591 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.005130 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.781734 B = 5456.505295 C = 5968.338649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.358 6.358 3 C 0.509 3.491 4 O -0.492 6.492 5 C -0.173 4.173 6 C -0.053 4.053 7 C -0.148 4.148 8 C -0.052 4.052 9 C -0.028 4.028 10 C -0.153 4.153 11 C -0.066 4.066 12 C -0.214 4.214 13 C -0.110 4.110 14 C -0.014 4.014 15 F -0.145 7.145 16 C 0.088 3.912 17 C -0.452 4.452 18 H 0.101 0.899 19 C 0.093 3.907 20 N -0.793 5.793 21 Si 0.904 3.096 22 H -0.257 1.257 23 H -0.289 1.289 24 H -0.250 1.250 25 C 0.182 3.818 26 F -0.104 7.104 27 H 0.100 0.900 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.139 0.861 31 H 0.132 0.868 32 H 0.136 0.864 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.109 0.891 36 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.313 -10.085 -7.743 12.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 O -0.275 6.275 3 C 0.353 3.647 4 O -0.380 6.380 5 C -0.175 4.175 6 C -0.071 4.071 7 C -0.166 4.166 8 C -0.071 4.071 9 C -0.029 4.029 10 C -0.155 4.155 11 C -0.085 4.085 12 C -0.233 4.233 13 C -0.129 4.129 14 C -0.034 4.034 15 F -0.124 7.124 16 C 0.084 3.916 17 C -0.479 4.479 18 H 0.119 0.881 19 C -0.128 4.128 20 N -0.416 5.416 21 Si 0.729 3.271 22 H -0.182 1.182 23 H -0.217 1.217 24 H -0.174 1.174 25 C 0.161 3.839 26 F -0.081 7.081 27 H 0.118 0.882 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.157 0.843 31 H 0.150 0.850 32 H 0.154 0.846 33 H 0.123 0.877 34 H 0.125 0.875 35 H 0.127 0.873 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -0.089 -9.692 -7.409 12.200 hybrid contribution 0.245 0.619 0.614 0.906 sum 0.156 -9.073 -6.795 11.337 Atomic orbital electron populations 1.23239 0.76312 1.03399 1.02696 1.86514 1.23279 1.32783 1.84897 1.21008 0.88843 0.81523 0.73307 1.90910 1.66541 1.35683 1.44868 1.18984 0.89487 0.93853 1.15193 1.21182 0.93740 0.96733 0.95490 1.20993 0.94030 0.97948 1.03678 1.21448 1.00418 0.90598 0.94604 1.18626 0.89710 0.94565 0.99979 1.18278 1.06023 0.92759 0.98394 1.20692 0.95883 0.95890 0.96008 1.20153 1.07854 0.96264 0.99076 1.20729 0.98953 0.99611 0.93616 1.17892 1.08670 0.89827 0.86980 1.91237 1.95318 1.70032 1.55778 1.17580 0.91061 0.89074 0.93891 1.19293 1.04422 1.35519 0.88691 0.88118 1.26123 1.00709 0.90463 0.95546 1.69680 1.37418 1.33284 1.01235 0.86533 0.82070 0.80097 0.78370 1.18200 1.21657 1.17354 1.17905 0.88920 0.80829 0.96204 1.91603 1.76698 1.47842 1.92006 0.88161 0.91803 0.91966 0.84327 0.84977 0.84636 0.87698 0.87460 0.87321 0.90281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.40 10.56 101.05 1.07 1.47 16 2 O -0.36 -5.15 9.81 -40.56 -0.40 -5.55 16 3 C 0.51 9.19 7.89 34.54 0.27 9.46 16 4 O -0.49 -10.44 15.12 -19.26 -0.29 -10.73 16 5 C -0.17 -3.11 5.87 -104.98 -0.62 -3.73 16 6 C -0.05 -0.75 9.61 -39.08 -0.38 -1.13 16 7 C -0.15 -1.95 10.01 -39.70 -0.40 -2.35 16 8 C -0.05 -0.83 9.73 -39.11 -0.38 -1.21 16 9 C -0.03 -0.55 4.71 -104.88 -0.49 -1.05 16 10 C -0.15 -3.36 5.05 -104.27 -0.53 -3.88 16 11 C -0.07 -1.28 9.71 -39.31 -0.38 -1.66 16 12 C -0.21 -4.05 10.02 -39.41 -0.40 -4.45 16 13 C -0.11 -2.30 9.99 -39.55 -0.40 -2.69 16 14 C -0.01 -0.34 5.65 -38.71 -0.22 -0.55 16 15 F -0.14 -3.69 12.92 2.25 0.03 -3.67 16 16 C 0.09 2.20 4.57 -106.49 -0.49 1.72 16 17 C -0.45 -12.35 8.31 -37.93 -0.32 -12.66 16 18 H 0.10 2.96 5.91 -52.49 -0.31 2.65 16 19 C 0.09 2.49 4.98 -17.31 -0.09 2.40 16 20 N -0.79 -21.73 13.93 55.55 0.77 -20.95 16 21 Si 0.90 21.37 24.72 -169.99 -4.20 17.17 16 22 H -0.26 -6.11 6.30 56.52 0.36 -5.75 16 23 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 24 H -0.25 -5.86 7.11 56.52 0.40 -5.45 16 25 C 0.18 3.80 6.15 -38.49 -0.24 3.56 16 26 F -0.10 -2.50 13.77 2.25 0.03 -2.47 16 27 H 0.10 0.72 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.14 1.55 7.60 -52.49 -0.40 1.15 16 31 H 0.13 1.25 8.06 -52.48 -0.42 0.82 16 32 H 0.14 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.10 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.11 1.99 8.06 -52.48 -0.42 1.56 16 36 H 0.29 7.11 8.29 -40.82 -0.34 6.77 16 LS Contribution 320.10 15.07 4.82 4.82 Total: -1.00 -31.22 320.10 -6.47 -37.68 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -3.27 Total: 0.44 kcal Atomic # 6 Polarization: -12.77 SS G_CDS: -3.97 Total: -16.74 kcal Atomic # 7 Polarization: -21.73 SS G_CDS: 0.77 Total: -20.95 kcal Atomic # 8 Polarization: -15.59 SS G_CDS: -0.69 Total: -16.28 kcal Atomic # 9 Polarization: -6.20 SS G_CDS: 0.06 Total: -6.14 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.20 Total: 17.17 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.22 -6.47 -37.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244548835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.906 kcal (2) G-P(sol) polarization free energy of solvation -31.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.684 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds