Wall clock time and date at job start Tue Mar 31 2020 12:39:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34726 * 117.00400 * 2 1 4 4 O 1.21494 * 119.99766 * 0.02562 * 3 2 1 5 5 C 1.47579 * 120.00116 * 179.97438 * 3 2 1 6 6 C 1.39807 * 120.10473 * 0.02562 * 5 3 2 7 7 C 1.38008 * 120.17990 * 180.02562 * 6 5 3 8 8 C 1.38133 * 120.39541 * 359.97438 * 7 6 5 9 9 C 1.39617 * 120.19653 * 359.97438 * 8 7 6 10 10 C 1.47856 * 120.09267 * 180.02562 * 9 8 7 11 11 C 1.39074 * 120.26252 * 64.99470 * 10 9 8 12 12 C 1.38131 * 120.17114 * 180.02562 * 11 10 9 13 13 C 1.38817 * 120.72157 * 0.02562 * 12 11 10 14 14 C 1.37730 * 120.52213 * 359.95528 * 13 12 11 15 15 F 1.35102 * 120.09845 * 180.02562 * 14 13 12 16 16 C 1.41030 * 119.80003 * 0.27478 * 14 13 12 17 17 C 1.40788 * 120.34396 * 179.72467 * 16 14 13 18 18 H 1.08000 * 119.99611 * 136.18780 * 17 16 14 19 19 C 1.40063 * 120.00170 * 316.18575 * 17 16 14 20 20 N 1.30796 * 120.00037 * 160.92973 * 19 17 16 21 21 Si 1.86796 * 120.00078 * 340.92958 * 19 17 16 22 22 H 1.48499 * 109.47348 * 95.26558 * 21 19 17 23 23 H 1.48504 * 109.47205 * 215.26923 * 21 19 17 24 24 H 1.48504 * 109.47124 * 335.26476 * 21 19 17 25 25 C 1.39645 * 120.09734 * 180.25484 * 5 3 2 26 26 F 1.35100 * 120.19935 * 359.97438 * 25 5 3 27 27 H 1.09001 * 109.47122 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47255 * 300.00148 * 1 2 3 29 29 H 1.09007 * 109.46736 * 59.99742 * 1 2 3 30 30 H 1.08001 * 119.91179 * 0.04511 * 6 5 3 31 31 H 1.08006 * 119.80295 * 179.97438 * 7 6 5 32 32 H 1.07993 * 119.90559 * 180.02562 * 8 7 6 33 33 H 1.07997 * 119.91867 * 0.02562 * 11 10 9 34 34 H 1.07999 * 119.63848 * 179.97438 * 12 11 10 35 35 H 1.08004 * 119.73699 * 179.97438 * 13 12 11 36 36 H 0.96994 * 120.00172 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0637 1.2004 0.0000 4 8 1.4020 2.2193 0.0005 5 6 3.5375 1.2775 0.0006 6 6 4.3010 0.1064 0.0006 7 6 5.6793 0.1767 0.0016 8 6 6.3165 1.4023 0.0022 9 6 5.5699 2.5820 0.0011 10 6 6.2544 3.8926 0.0011 11 6 7.0298 4.2783 -1.0870 12 6 7.6688 5.5029 -1.0848 13 6 7.5487 6.3636 -0.0023 14 6 6.7879 6.0112 1.0904 15 9 6.6765 6.8556 2.1391 16 6 6.1298 4.7641 1.1135 17 6 5.3539 4.3898 2.2271 18 1 4.3876 3.9299 2.0818 19 6 5.8352 4.6140 3.5232 20 7 5.0070 4.6252 4.5355 21 14 7.6598 4.8969 3.8061 22 1 7.9352 6.3557 3.8393 23 1 8.0604 4.2879 5.0999 24 1 8.4344 4.2718 2.7040 25 6 4.1736 2.5207 0.0059 26 9 3.4437 3.6575 0.0101 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 3.8109 -0.8560 -0.0006 31 1 6.2632 -0.7319 0.0021 32 1 7.3955 1.4481 0.0026 33 1 7.1326 3.6188 -1.9360 34 1 8.2692 5.7936 -1.9342 35 1 8.0556 7.3171 -0.0172 36 1 5.3401 4.7807 5.4330 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244548835.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:48 Heat of formation + Delta-G solvation = -140.959114 kcal Electronic energy + Delta-G solvation = -26454.864382 eV Core-core repulsion = 22311.359849 eV Total energy + Delta-G solvation = -4143.504533 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -49.86558 -49.60716 -41.54940 -40.15243 -38.74506 -37.53563 -35.55476 -33.70948 -32.32439 -31.73271 -29.97058 -28.64569 -27.16077 -25.26542 -24.22088 -22.95543 -22.22389 -21.71107 -19.79022 -19.07099 -18.54346 -17.90231 -17.68614 -17.55985 -17.41883 -16.99186 -16.82727 -16.36340 -16.22495 -15.83187 -15.73493 -15.15887 -14.88638 -14.55566 -14.42010 -14.12944 -14.00698 -13.74195 -13.53349 -13.21486 -13.02769 -13.00629 -12.86955 -12.56299 -12.37121 -12.10492 -12.01333 -11.88395 -11.65041 -11.41713 -11.13029 -10.16157 -9.80027 -9.38732 -9.23926 -8.88856 -6.57055 -0.43754 0.08218 0.61653 0.62885 1.24328 1.30931 1.37004 1.40061 1.56197 2.09340 2.52085 2.64115 3.15060 3.24398 3.58623 3.69073 3.88783 4.03689 4.14451 4.26003 4.28604 4.29499 4.36093 4.48330 4.62299 4.65462 4.78525 4.86115 5.00351 5.05339 5.15796 5.25822 5.29712 5.34364 5.47405 5.57446 5.69024 5.79934 5.89703 6.10188 6.28458 6.57666 6.61706 6.72413 8.18515 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.015307 B = 0.005130 C = 0.004690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.781734 B = 5456.505295 C = 5968.338649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.346 6.346 3 C 0.508 3.492 4 O -0.539 6.539 5 C -0.192 4.192 6 C -0.034 4.034 7 C -0.125 4.125 8 C -0.046 4.046 9 C -0.061 4.061 10 C -0.144 4.144 11 C -0.070 4.070 12 C -0.181 4.181 13 C -0.117 4.117 14 C -0.046 4.046 15 F -0.161 7.161 16 C 0.062 3.938 17 C -0.487 4.487 18 H 0.059 0.941 19 C 0.055 3.945 20 N -0.851 5.851 21 Si 0.953 3.047 22 H -0.264 1.264 23 H -0.275 1.275 24 H -0.245 1.245 25 C 0.139 3.861 26 F -0.140 7.140 27 H 0.147 0.853 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.177 0.823 31 H 0.188 0.812 32 H 0.162 0.838 33 H 0.148 0.852 34 H 0.157 0.843 35 H 0.138 0.862 36 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.322 -13.030 -10.696 17.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.262 6.262 3 C 0.354 3.646 4 O -0.430 6.430 5 C -0.194 4.194 6 C -0.052 4.052 7 C -0.143 4.143 8 C -0.064 4.064 9 C -0.062 4.062 10 C -0.146 4.146 11 C -0.088 4.088 12 C -0.200 4.200 13 C -0.135 4.135 14 C -0.065 4.065 15 F -0.140 7.140 16 C 0.059 3.941 17 C -0.517 4.517 18 H 0.077 0.923 19 C -0.159 4.159 20 N -0.478 5.478 21 Si 0.775 3.225 22 H -0.189 1.189 23 H -0.201 1.201 24 H -0.168 1.168 25 C 0.119 3.881 26 F -0.119 7.119 27 H 0.165 0.835 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.194 0.806 31 H 0.205 0.795 32 H 0.180 0.820 33 H 0.165 0.835 34 H 0.174 0.826 35 H 0.155 0.845 36 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.929 -12.671 -10.382 16.641 hybrid contribution -0.669 1.396 1.149 1.928 sum 2.260 -11.275 -9.233 14.748 Atomic orbital electron populations 1.23636 0.74199 1.06272 1.02345 1.86493 1.25252 1.30465 1.84013 1.21229 0.89188 0.81881 0.72255 1.90884 1.67525 1.37416 1.47189 1.19238 0.89865 0.94231 1.16031 1.21711 0.94343 0.96591 0.92572 1.21579 0.93734 0.98825 1.00148 1.21833 1.01567 0.90035 0.92942 1.18796 0.89473 0.95309 1.02576 1.18775 1.04828 0.93345 0.97612 1.21231 0.94627 0.96803 0.96163 1.20843 1.05356 0.94803 0.99002 1.21160 0.98315 1.01300 0.92768 1.18369 1.10357 0.89840 0.87976 1.91186 1.95611 1.70411 1.56817 1.17825 0.91713 0.90009 0.94536 1.19085 1.04090 1.38315 0.90194 0.92340 1.26755 1.03760 0.90236 0.95180 1.69741 1.38796 1.37509 1.01739 0.85796 0.78363 0.79488 0.78841 1.18950 1.20088 1.16824 1.18394 0.89727 0.80903 0.99097 1.91496 1.77642 1.49906 1.92825 0.83523 0.92770 0.91894 0.80561 0.79516 0.82012 0.83459 0.82565 0.84451 0.89942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.35 -9.57 9.81 -56.37 -0.55 -10.12 16 3 C 0.51 18.85 7.89 70.29 0.55 19.41 16 4 O -0.54 -24.47 15.12 19.86 0.30 -24.17 16 5 C -0.19 -6.91 5.87 -20.09 -0.12 -7.03 16 6 C -0.03 -0.85 9.61 22.60 0.22 -0.63 16 7 C -0.13 -2.66 10.01 22.19 0.22 -2.44 16 8 C -0.05 -1.29 9.73 22.58 0.22 -1.07 16 9 C -0.06 -2.38 4.71 -20.03 -0.09 -2.48 16 10 C -0.14 -6.24 5.05 -19.63 -0.10 -6.34 16 11 C -0.07 -2.43 9.71 22.45 0.22 -2.22 16 12 C -0.18 -5.98 10.02 22.38 0.22 -5.76 16 13 C -0.12 -4.57 9.99 22.29 0.22 -4.34 16 14 C -0.05 -2.24 5.65 22.83 0.13 -2.11 16 15 F -0.16 -8.51 12.92 44.97 0.58 -7.93 16 16 C 0.06 3.22 4.57 -21.08 -0.10 3.12 16 17 C -0.49 -28.61 8.31 23.34 0.19 -28.42 16 18 H 0.06 3.82 5.91 -2.91 -0.02 3.80 16 19 C 0.06 3.15 4.98 85.29 0.43 3.58 16 20 N -0.85 -50.42 13.93 21.85 0.30 -50.12 16 21 Si 0.95 45.48 24.72 68.60 1.70 47.17 16 22 H -0.26 -12.71 6.30 99.48 0.63 -12.08 16 23 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 24 H -0.25 -11.22 7.11 99.48 0.71 -10.51 16 25 C 0.14 6.04 6.15 22.98 0.14 6.18 16 26 F -0.14 -7.42 13.77 44.97 0.62 -6.80 16 27 H 0.15 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 30 H 0.18 3.03 7.60 -2.91 -0.02 3.00 16 31 H 0.19 2.05 8.06 -2.91 -0.02 2.02 16 32 H 0.16 3.64 8.06 -2.91 -0.02 3.61 16 33 H 0.15 3.88 8.06 -2.91 -0.02 3.86 16 34 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 35 H 0.14 4.54 8.06 -2.91 -0.02 4.51 16 36 H 0.29 15.55 8.29 -92.71 -0.77 14.78 16 Total: -1.00 -78.90 320.10 7.56 -71.33 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: 1.06 Total: 9.39 kcal Atomic # 6 Polarization: -32.32 SS G_CDS: 3.56 Total: -28.76 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.30 Total: -50.12 kcal Atomic # 8 Polarization: -34.04 SS G_CDS: -0.25 Total: -34.29 kcal Atomic # 9 Polarization: -15.93 SS G_CDS: 1.20 Total: -14.73 kcal Atomic # 14 Polarization: 45.48 SS G_CDS: 1.70 Total: 47.17 kcal Total: -78.90 7.56 -71.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244548835.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.624 kcal (2) G-P(sol) polarization free energy of solvation -78.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds