Wall clock time and date at job start Tue Mar 31 2020 12:39:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34775 * 116.99771 * 2 1 4 4 O 1.21518 * 120.00075 * 359.97438 * 3 2 1 5 5 C 1.47288 * 119.99670 * 180.02562 * 3 2 1 6 6 C 1.40086 * 120.07020 * 269.99023 * 5 3 2 7 7 F 1.35099 * 120.03951 * 359.96109 * 6 5 3 8 8 C 1.37929 * 119.92127 * 179.97438 * 6 5 3 9 9 C 1.39442 * 120.07326 * 359.97438 * 8 6 5 10 10 C 1.48314 * 119.91979 * 180.02562 * 9 8 6 11 11 C 1.39778 * 120.00763 * 0.02562 * 10 9 8 12 12 C 1.38373 * 120.37422 * 180.02562 * 11 10 9 13 13 C 1.37734 * 120.38767 * 0.27995 * 12 11 10 14 14 C 1.40749 * 119.99783 * 359.44885 * 13 12 11 15 15 C 1.41433 * 120.18397 * 180.29883 * 14 13 12 16 16 H 1.07997 * 119.99789 * 204.64670 * 15 14 13 17 17 C 1.39927 * 119.99813 * 24.64954 * 15 14 13 18 18 N 1.30830 * 120.00403 * 17.74857 * 17 15 14 19 19 Si 1.86801 * 120.00022 * 197.75506 * 17 15 14 20 20 H 1.48493 * 109.47530 * 89.99778 * 19 17 15 21 21 H 1.48500 * 109.47092 * 209.99790 * 19 17 15 22 22 H 1.48509 * 109.46699 * 329.99464 * 19 17 15 23 23 C 1.38795 * 120.00753 * 180.02562 * 10 9 8 24 24 C 1.39445 * 120.15515 * 0.29970 * 9 8 6 25 25 C 1.37922 * 120.07495 * 359.44609 * 24 9 8 26 26 F 1.35100 * 120.04011 * 180.29762 * 25 24 9 27 27 H 1.09003 * 109.46922 * 60.00948 * 1 2 3 28 28 H 1.09002 * 109.47086 * 180.02562 * 1 2 3 29 29 H 1.08995 * 109.47476 * 300.00352 * 1 2 3 30 30 H 1.07991 * 119.96190 * 180.02562 * 8 6 5 31 31 H 1.07998 * 119.81242 * 0.04256 * 11 10 9 32 32 H 1.08003 * 119.80648 * 179.97438 * 12 11 10 33 33 H 1.07999 * 119.99766 * 179.70307 * 13 12 11 34 34 H 0.97002 * 120.00437 * 180.02562 * 18 17 15 35 35 H 1.08007 * 120.18655 * 0.02562 * 23 10 9 36 36 H 1.08001 * 119.96185 * 179.72572 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2009 0.0000 4 8 1.4019 2.2200 -0.0005 5 6 3.5347 1.2779 -0.0006 6 6 4.2361 1.3146 1.2115 7 9 3.5642 1.2802 2.3830 8 6 5.6135 1.3862 1.2074 9 6 6.3078 1.4216 -0.0014 10 6 7.7889 1.4981 -0.0019 11 6 8.4874 1.5340 1.2083 12 6 9.8693 1.6059 1.2167 13 6 10.5719 1.6486 0.0329 14 6 9.8851 1.6074 -1.1950 15 6 10.6031 1.6447 -2.4129 16 1 10.1246 2.0066 -3.3109 17 6 11.9334 1.2126 -2.4544 18 7 12.4086 0.4649 -1.4917 19 14 13.0307 1.7034 -3.8842 20 1 13.7162 2.9817 -3.5660 21 1 14.0440 0.6431 -4.1172 22 1 12.2043 1.8755 -5.1060 23 6 8.4818 1.5339 -1.2040 24 6 5.6124 1.3910 -1.2098 25 6 4.2353 1.3141 -1.2130 26 9 3.5627 1.2784 -2.3841 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5138 0.8899 30 1 6.1549 1.4141 2.1413 31 1 7.9456 1.5053 2.1421 32 1 10.3997 1.6336 2.1571 33 1 11.6501 1.7095 0.0468 34 1 13.3309 0.1656 -1.5203 35 1 7.9453 1.5067 -2.1410 36 1 6.1531 1.4230 -2.1442 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244601676.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:52 Heat of formation + Delta-G solvation = -142.391329 kcal Electronic energy + Delta-G solvation = -24989.781300 eV Core-core repulsion = 20846.214661 eV Total energy + Delta-G solvation = -4143.566638 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -50.36078 -50.33318 -41.70710 -40.45525 -38.79118 -37.70541 -35.66430 -33.59939 -32.22703 -31.36150 -30.49186 -28.55697 -27.24657 -25.58532 -24.38286 -22.96122 -22.22486 -21.95151 -19.81066 -19.36363 -18.66380 -18.47287 -18.27492 -17.38886 -17.18399 -17.17096 -16.91734 -16.67761 -16.62174 -15.90900 -15.67398 -15.15280 -15.13013 -14.61327 -14.41811 -14.18172 -13.98112 -13.91406 -13.48946 -13.37786 -13.15664 -13.04089 -12.80121 -12.71786 -12.42016 -12.11193 -11.98379 -11.98077 -11.63614 -11.26225 -11.08833 -10.62465 -10.04837 -9.42369 -8.95219 -8.63711 -6.34649 -0.77995 -0.23753 0.61806 0.96087 1.00534 1.41194 1.43318 1.53017 1.53303 2.19682 2.23154 2.37849 2.79110 3.03277 3.28108 3.48852 3.49126 3.74726 3.91328 4.18290 4.25443 4.27827 4.36995 4.42111 4.49511 4.62036 4.66959 4.78254 4.89256 4.98654 5.08275 5.10644 5.28667 5.43440 5.44667 5.62811 5.92374 6.06417 6.11283 6.28644 6.32445 6.66588 6.93383 6.98514 8.33518 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.023600 B = 0.002946 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1186.177140 B = 9501.784564 C =10410.827422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.352 6.352 3 C 0.527 3.473 4 O -0.510 6.510 5 C -0.212 4.212 6 C 0.174 3.826 7 F -0.122 7.122 8 C -0.151 4.151 9 C 0.064 3.936 10 C -0.054 4.054 11 C -0.203 4.203 12 C -0.111 4.111 13 C -0.172 4.172 14 C 0.074 3.926 15 C -0.499 4.499 16 H 0.077 0.923 17 C 0.038 3.962 18 N -0.825 5.825 19 Si 0.977 3.023 20 H -0.264 1.264 21 H -0.270 1.270 22 H -0.259 1.259 23 C -0.205 4.205 24 C -0.159 4.159 25 C 0.172 3.828 26 F -0.125 7.125 27 H 0.068 0.932 28 H 0.140 0.860 29 H 0.069 0.931 30 H 0.176 0.824 31 H 0.133 0.867 32 H 0.119 0.881 33 H 0.103 0.897 34 H 0.288 0.712 35 H 0.110 0.890 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.053 -1.518 3.482 14.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.267 6.267 3 C 0.369 3.631 4 O -0.399 6.399 5 C -0.215 4.215 6 C 0.155 3.845 7 F -0.100 7.100 8 C -0.169 4.169 9 C 0.064 3.936 10 C -0.054 4.054 11 C -0.222 4.222 12 C -0.129 4.129 13 C -0.192 4.192 14 C 0.072 3.928 15 C -0.528 4.528 16 H 0.096 0.904 17 C -0.177 4.177 18 N -0.451 5.451 19 Si 0.799 3.201 20 H -0.189 1.189 21 H -0.195 1.195 22 H -0.183 1.183 23 C -0.224 4.224 24 C -0.178 4.178 25 C 0.153 3.847 26 F -0.103 7.103 27 H 0.086 0.914 28 H 0.158 0.842 29 H 0.088 0.912 30 H 0.193 0.807 31 H 0.151 0.849 32 H 0.137 0.863 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -14.164 -1.382 3.551 14.668 hybrid contribution 0.279 0.153 -0.694 0.764 sum -13.885 -1.229 2.856 14.229 Atomic orbital electron populations 1.23757 0.73461 1.06517 1.03164 1.86676 1.26053 1.31013 1.82985 1.20715 0.88304 0.82240 0.71815 1.90859 1.66827 1.36861 1.45334 1.18962 0.90712 1.18099 0.93702 1.16942 0.89532 0.99027 0.79038 1.91553 1.80423 1.93320 1.44723 1.21332 0.90622 1.04185 1.00789 1.18721 0.92854 0.90606 0.91459 1.18347 0.89328 1.03509 0.94253 1.20890 0.93738 1.11116 0.96452 1.20960 0.94468 1.00197 0.97317 1.21508 0.99598 1.05607 0.92483 1.17878 0.91895 0.89209 0.93813 1.19822 0.97224 1.39605 0.96149 0.90448 1.26662 0.99399 0.91855 0.99820 1.69848 1.17038 1.24558 1.33623 0.85266 0.77701 0.78894 0.78277 1.18854 1.19515 1.18285 1.21323 0.93968 1.10842 0.96316 1.21331 0.90883 1.04566 1.01005 1.16952 0.89392 0.99187 0.79206 1.91546 1.80378 1.93349 1.45064 0.91351 0.84206 0.91196 0.80707 0.84911 0.86327 0.87937 0.90127 0.87194 0.82145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 10.57 113.37 1.20 1.57 16 2 O -0.35 -8.76 10.58 -56.86 -0.60 -9.36 16 3 C 0.53 15.56 6.66 70.20 0.47 16.03 16 4 O -0.51 -17.01 16.90 19.78 0.33 -16.68 16 5 C -0.21 -6.19 5.76 -20.00 -0.12 -6.31 16 6 C 0.17 4.77 7.28 22.65 0.16 4.94 16 7 F -0.12 -3.23 16.82 44.97 0.76 -2.48 16 8 C -0.15 -4.05 9.38 22.49 0.21 -3.84 16 9 C 0.06 2.00 5.88 -20.01 -0.12 1.89 16 10 C -0.05 -2.06 5.87 -20.09 -0.12 -2.18 16 11 C -0.20 -7.46 9.43 22.67 0.21 -7.25 16 12 C -0.11 -4.56 10.01 22.18 0.22 -4.33 16 13 C -0.17 -8.35 8.69 22.76 0.20 -8.15 16 14 C 0.07 3.70 5.57 -21.32 -0.12 3.58 16 15 C -0.50 -25.27 9.05 23.47 0.21 -25.06 16 16 H 0.08 3.78 7.91 -2.91 -0.02 3.76 16 17 C 0.04 1.81 5.14 85.25 0.44 2.25 16 18 N -0.82 -41.07 10.96 21.82 0.24 -40.83 16 19 Si 0.98 36.62 29.59 68.60 2.03 38.65 16 20 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 21 H -0.27 -9.71 7.11 99.48 0.71 -9.01 16 22 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 23 C -0.21 -8.96 9.16 22.96 0.21 -8.75 16 24 C -0.16 -4.75 9.38 22.49 0.21 -4.54 16 25 C 0.17 5.04 7.28 22.64 0.16 5.20 16 26 F -0.13 -3.65 16.82 44.97 0.76 -2.90 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.14 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.18 3.93 6.16 -2.92 -0.02 3.91 16 31 H 0.13 3.85 6.16 -2.91 -0.02 3.83 16 32 H 0.12 4.18 8.06 -2.91 -0.02 4.16 16 33 H 0.10 5.26 6.16 -2.91 -0.02 5.24 16 34 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 35 H 0.11 4.44 6.17 -2.91 -0.02 4.42 16 36 H 0.16 4.63 6.17 -2.91 -0.02 4.61 16 Total: -1.00 -57.91 327.59 8.11 -49.79 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 1.16 Total: 18.76 kcal Atomic # 6 Polarization: -38.40 SS G_CDS: 3.44 Total: -34.96 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 0.24 Total: -40.83 kcal Atomic # 8 Polarization: -25.77 SS G_CDS: -0.27 Total: -26.04 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 1.51 Total: -5.37 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Total: -57.91 8.11 -49.79 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244601676.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.599 kcal (2) G-P(sol) polarization free energy of solvation -57.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds