Wall clock time and date at job start Tue Mar 31 2020 12:39:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34784 * 116.99688 * 2 1 4 4 O 1.21527 * 120.00127 * 359.97438 * 3 2 1 5 5 C 1.47289 * 119.99554 * 180.02562 * 3 2 1 6 6 C 1.40126 * 120.04544 * 269.99414 * 5 3 2 7 7 F 1.35100 * 120.02901 * 0.02562 * 6 5 3 8 8 C 1.37856 * 119.94740 * 180.02562 * 6 5 3 9 9 C 1.39703 * 120.04698 * 0.02562 * 8 6 5 10 10 C 1.47893 * 119.94464 * 179.97438 * 9 8 6 11 11 C 1.39983 * 119.88201 * 179.97438 * 10 9 8 12 12 C 1.36240 * 120.11938 * 179.97438 * 11 10 9 13 13 C 1.40950 * 119.87804 * 0.27573 * 12 11 10 14 14 C 1.40994 * 120.11659 * 179.72489 * 13 12 11 15 15 H 1.08000 * 119.99594 * 24.56087 * 14 13 12 16 16 C 1.40086 * 120.00231 * 204.57166 * 14 13 12 17 17 N 1.30748 * 120.00385 * 17.76678 * 16 14 13 18 18 Si 1.86804 * 119.99882 * 197.77641 * 16 14 13 19 19 H 1.48503 * 109.47328 * 59.99518 * 18 16 14 20 20 H 1.48502 * 109.47173 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46883 * 299.99445 * 18 16 14 22 22 C 1.40957 * 119.76906 * 359.45248 * 13 12 11 23 23 C 1.36227 * 119.88004 * 0.54739 * 22 13 12 24 24 C 1.39693 * 120.10387 * 0.26750 * 9 8 6 25 25 C 1.37854 * 120.05130 * 359.45351 * 24 9 8 26 26 F 1.35106 * 120.02523 * 180.29507 * 25 24 9 27 27 H 1.08995 * 109.46922 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47175 * 299.99969 * 1 2 3 29 29 H 1.09003 * 109.46859 * 60.00460 * 1 2 3 30 30 H 1.07996 * 119.97398 * 179.97438 * 8 6 5 31 31 H 1.08002 * 119.94016 * 0.02562 * 11 10 9 32 32 H 1.07997 * 120.06070 * 180.02562 * 12 11 10 33 33 H 0.96996 * 119.99929 * 180.02562 * 17 16 14 34 34 H 1.08005 * 120.05650 * 180.29810 * 22 13 12 35 35 H 1.08000 * 119.93949 * 179.74729 * 23 22 13 36 36 H 1.08000 * 119.97378 * 179.70868 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4020 2.2202 -0.0005 5 6 3.5348 1.2780 -0.0006 6 6 4.2359 1.3146 1.2121 7 9 3.5633 1.2787 2.3833 8 6 5.6125 1.3872 1.2092 9 6 6.3085 1.4249 -0.0015 10 6 7.7853 1.5034 -0.0020 11 6 8.4814 1.5406 -1.2159 12 6 9.8418 1.6134 -1.2220 13 6 10.5487 1.6455 -0.0030 14 6 11.9569 1.7150 -0.0034 15 1 12.4767 2.1319 -0.8534 16 6 12.6819 1.2432 1.0985 17 7 12.1143 0.4384 1.9585 18 14 14.4596 1.7641 1.3393 19 1 14.5291 3.2417 1.4701 20 1 14.9979 1.1327 2.5709 21 1 15.2648 1.3324 0.1687 22 6 9.8426 1.6137 1.2165 23 6 8.4823 1.5408 1.2114 24 6 5.6113 1.3948 -1.2117 25 6 4.2350 1.3163 -1.2137 26 9 3.5616 1.2811 -2.3844 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 6.1533 1.4159 2.1436 31 1 7.9389 1.5123 -2.1494 32 1 10.3778 1.6425 -2.1591 33 1 12.6162 0.1120 2.7216 34 1 10.3793 1.6429 2.1533 35 1 7.9405 1.5123 2.1453 36 1 6.1512 1.4287 -2.1464 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244602515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:56 Heat of formation + Delta-G solvation = -135.554381 kcal Electronic energy + Delta-G solvation = -24896.672811 eV Core-core repulsion = 20753.402645 eV Total energy + Delta-G solvation = -4143.270166 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -48.98338 -48.95569 -40.37588 -38.90730 -37.32137 -36.40993 -34.26109 -32.02116 -30.65037 -29.62445 -29.37151 -27.79153 -25.92889 -23.52969 -23.05422 -21.51251 -20.79777 -20.38871 -18.30843 -17.79160 -17.53807 -17.23083 -17.07495 -15.95629 -15.80588 -15.78340 -15.43892 -15.25191 -15.16578 -14.68235 -14.08332 -13.82744 -13.57387 -13.25798 -13.11224 -12.69542 -12.51842 -12.35380 -12.28090 -12.20572 -11.72773 -11.56720 -11.39137 -11.25033 -11.01987 -10.90266 -10.79047 -10.57240 -10.09022 -9.68245 -9.59782 -9.01097 -8.65215 -7.90305 -7.44043 -7.20696 -4.71862 0.74158 1.22482 1.99415 2.37470 2.67472 2.83928 2.85673 2.86957 2.92778 3.59612 3.68342 3.84119 4.34149 4.50230 4.65511 4.93910 4.95938 5.01260 5.05225 5.33581 5.35543 5.37395 5.74965 5.84591 5.93669 6.02487 6.12743 6.23183 6.26745 6.37924 6.60305 6.67750 6.86789 6.93910 7.02905 7.23875 7.52974 7.59250 7.66523 7.77380 7.86364 8.20802 8.41729 8.55072 9.67865 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.031604 B = 0.002675 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.752564 B =10463.236106 C =11080.038166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.349 6.349 3 C 0.530 3.470 4 O -0.493 6.493 5 C -0.245 4.245 6 C 0.182 3.818 7 F -0.131 7.131 8 C -0.197 4.197 9 C 0.110 3.890 10 C -0.228 4.228 11 C -0.046 4.046 12 C -0.230 4.230 13 C 0.123 3.877 14 C -0.426 4.426 15 H 0.088 0.912 16 C 0.070 3.930 17 N -0.762 5.762 18 Si 0.917 3.083 19 H -0.259 1.259 20 H -0.274 1.274 21 H -0.261 1.261 22 C -0.175 4.175 23 C -0.061 4.061 24 C -0.199 4.199 25 C 0.182 3.818 26 F -0.131 7.131 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.148 0.852 31 H 0.098 0.902 32 H 0.099 0.901 33 H 0.291 0.709 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.638 -1.285 -1.120 9.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.265 6.265 3 C 0.373 3.627 4 O -0.379 6.379 5 C -0.247 4.247 6 C 0.163 3.837 7 F -0.109 7.109 8 C -0.216 4.216 9 C 0.109 3.891 10 C -0.229 4.229 11 C -0.064 4.064 12 C -0.250 4.250 13 C 0.120 3.880 14 C -0.452 4.452 15 H 0.106 0.894 16 C -0.152 4.152 17 N -0.383 5.383 18 Si 0.740 3.260 19 H -0.183 1.183 20 H -0.199 1.199 21 H -0.185 1.185 22 C -0.194 4.194 23 C -0.080 4.080 24 C -0.218 4.218 25 C 0.162 3.838 26 F -0.110 7.110 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.166 0.834 31 H 0.116 0.884 32 H 0.118 0.882 33 H 0.102 0.898 34 H 0.139 0.861 35 H 0.115 0.885 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.868 -1.152 -0.893 9.976 hybrid contribution 0.244 0.087 0.189 0.320 sum -9.625 -1.065 -0.704 9.709 Atomic orbital electron populations 1.23312 0.76300 1.03808 1.02619 1.86705 1.23361 1.32667 1.83791 1.20777 0.88446 0.81660 0.71856 1.90844 1.66642 1.36119 1.44328 1.18512 0.89829 1.23120 0.93289 1.16997 0.89541 0.98299 0.78902 1.91512 1.80623 1.93406 1.45407 1.21102 0.90627 1.09438 1.00465 1.18686 0.93870 0.86470 0.90074 1.17859 0.88236 1.22631 0.94191 1.20452 0.94268 0.96364 0.95358 1.20721 0.93420 1.13621 0.97202 1.17827 0.93276 0.85698 0.91233 1.19908 0.91833 1.31710 1.01779 0.89411 1.26165 1.01996 0.92591 0.94490 1.69764 1.39230 1.19385 1.09967 0.86192 0.80338 0.80463 0.79009 1.18294 1.19854 1.18490 1.21020 0.92466 1.07211 0.98688 1.20546 0.94625 0.97600 0.95212 1.21074 0.90633 1.09710 1.00377 1.16987 0.89529 0.98345 0.78896 1.91512 1.80594 1.93426 1.45447 0.87895 0.91782 0.91779 0.83438 0.88433 0.88235 0.89781 0.86095 0.88512 0.83520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.57 101.05 1.07 1.41 16 2 O -0.35 -5.13 10.58 -40.72 -0.43 -5.56 16 3 C 0.53 8.99 6.65 34.41 0.23 9.21 16 4 O -0.49 -9.16 16.90 -19.29 -0.33 -9.49 16 5 C -0.24 -4.16 5.77 -104.80 -0.60 -4.76 16 6 C 0.18 3.03 7.28 -39.01 -0.28 2.75 16 7 F -0.13 -2.14 16.82 2.25 0.04 -2.10 16 8 C -0.20 -3.26 9.38 -39.17 -0.37 -3.63 16 9 C 0.11 1.92 5.88 -104.85 -0.62 1.30 16 10 C -0.23 -4.49 5.90 -104.64 -0.62 -5.11 16 11 C -0.05 -0.91 9.35 -39.65 -0.37 -1.28 16 12 C -0.23 -4.93 9.73 -39.27 -0.38 -5.31 16 13 C 0.12 2.87 5.57 -106.80 -0.60 2.27 16 14 C -0.43 -9.75 9.03 -37.85 -0.34 -10.09 16 15 H 0.09 1.90 7.91 -52.49 -0.42 1.48 16 16 C 0.07 1.52 5.13 -17.32 -0.09 1.43 16 17 N -0.76 -17.09 10.96 55.55 0.61 -16.48 16 18 Si 0.92 16.08 29.60 -169.99 -5.03 11.05 16 19 H -0.26 -4.54 7.11 56.52 0.40 -4.14 16 20 H -0.27 -4.70 7.11 56.52 0.40 -4.30 16 21 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 22 C -0.17 -3.98 8.63 -39.28 -0.34 -4.32 16 23 C -0.06 -1.26 9.35 -39.65 -0.37 -1.63 16 24 C -0.20 -3.23 9.38 -39.18 -0.37 -3.60 16 25 C 0.18 3.00 7.28 -39.02 -0.28 2.71 16 26 F -0.13 -2.11 16.82 2.25 0.04 -2.07 16 27 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 29 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.15 2.25 6.15 -52.49 -0.32 1.93 16 31 H 0.10 1.64 6.15 -52.49 -0.32 1.31 16 32 H 0.10 1.97 8.06 -52.49 -0.42 1.55 16 33 H 0.29 5.88 8.29 -40.82 -0.34 5.54 16 34 H 0.12 2.82 6.17 -52.48 -0.32 2.50 16 35 H 0.10 1.76 6.15 -52.49 -0.32 1.44 16 36 H 0.15 2.14 6.15 -52.49 -0.32 1.82 16 LS Contribution 327.34 15.07 4.93 4.93 Total: -1.00 -25.31 327.34 -7.36 -32.67 By element: Atomic # 1 Polarization: 8.55 SS G_CDS: -2.86 Total: 5.69 kcal Atomic # 6 Polarization: -14.30 SS G_CDS: -4.33 Total: -18.64 kcal Atomic # 7 Polarization: -17.09 SS G_CDS: 0.61 Total: -16.48 kcal Atomic # 8 Polarization: -14.29 SS G_CDS: -0.76 Total: -15.05 kcal Atomic # 9 Polarization: -4.25 SS G_CDS: 0.08 Total: -4.18 kcal Atomic # 14 Polarization: 16.08 SS G_CDS: -5.03 Total: 11.05 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -25.31 -7.36 -32.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244602515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.884 kcal (2) G-P(sol) polarization free energy of solvation -25.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds