Wall clock time and date at job start Tue Mar 31 2020 12:39:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34784 * 116.99688 * 2 1 4 4 O 1.21527 * 120.00127 * 359.97438 * 3 2 1 5 5 C 1.47289 * 119.99554 * 180.02562 * 3 2 1 6 6 C 1.40126 * 120.04544 * 269.99414 * 5 3 2 7 7 F 1.35100 * 120.02901 * 0.02562 * 6 5 3 8 8 C 1.37856 * 119.94740 * 180.02562 * 6 5 3 9 9 C 1.39703 * 120.04698 * 0.02562 * 8 6 5 10 10 C 1.47893 * 119.94464 * 179.97438 * 9 8 6 11 11 C 1.39983 * 119.88201 * 179.97438 * 10 9 8 12 12 C 1.36240 * 120.11938 * 179.97438 * 11 10 9 13 13 C 1.40950 * 119.87804 * 0.27573 * 12 11 10 14 14 C 1.40994 * 120.11659 * 179.72489 * 13 12 11 15 15 H 1.08000 * 119.99594 * 24.56087 * 14 13 12 16 16 C 1.40086 * 120.00231 * 204.57166 * 14 13 12 17 17 N 1.30748 * 120.00385 * 17.76678 * 16 14 13 18 18 Si 1.86804 * 119.99882 * 197.77641 * 16 14 13 19 19 H 1.48503 * 109.47328 * 59.99518 * 18 16 14 20 20 H 1.48502 * 109.47173 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.46883 * 299.99445 * 18 16 14 22 22 C 1.40957 * 119.76906 * 359.45248 * 13 12 11 23 23 C 1.36227 * 119.88004 * 0.54739 * 22 13 12 24 24 C 1.39693 * 120.10387 * 0.26750 * 9 8 6 25 25 C 1.37854 * 120.05130 * 359.45351 * 24 9 8 26 26 F 1.35106 * 120.02523 * 180.29507 * 25 24 9 27 27 H 1.08995 * 109.46922 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47175 * 299.99969 * 1 2 3 29 29 H 1.09003 * 109.46859 * 60.00460 * 1 2 3 30 30 H 1.07996 * 119.97398 * 179.97438 * 8 6 5 31 31 H 1.08002 * 119.94016 * 0.02562 * 11 10 9 32 32 H 1.07997 * 120.06070 * 180.02562 * 12 11 10 33 33 H 0.96996 * 119.99929 * 180.02562 * 17 16 14 34 34 H 1.08005 * 120.05650 * 180.29810 * 22 13 12 35 35 H 1.08000 * 119.93949 * 179.74729 * 23 22 13 36 36 H 1.08000 * 119.97378 * 179.70868 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0639 1.2010 0.0000 4 8 1.4020 2.2202 -0.0005 5 6 3.5348 1.2780 -0.0006 6 6 4.2359 1.3146 1.2121 7 9 3.5633 1.2787 2.3833 8 6 5.6125 1.3872 1.2092 9 6 6.3085 1.4249 -0.0015 10 6 7.7853 1.5034 -0.0020 11 6 8.4814 1.5406 -1.2159 12 6 9.8418 1.6134 -1.2220 13 6 10.5487 1.6455 -0.0030 14 6 11.9569 1.7150 -0.0034 15 1 12.4767 2.1319 -0.8534 16 6 12.6819 1.2432 1.0985 17 7 12.1143 0.4384 1.9585 18 14 14.4596 1.7641 1.3393 19 1 14.5291 3.2417 1.4701 20 1 14.9979 1.1327 2.5709 21 1 15.2648 1.3324 0.1687 22 6 9.8426 1.6137 1.2165 23 6 8.4823 1.5408 1.2114 24 6 5.6113 1.3948 -1.2117 25 6 4.2350 1.3163 -1.2137 26 9 3.5616 1.2811 -2.3844 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8901 30 1 6.1533 1.4159 2.1436 31 1 7.9389 1.5123 -2.1494 32 1 10.3778 1.6425 -2.1591 33 1 12.6162 0.1120 2.7216 34 1 10.3793 1.6429 2.1533 35 1 7.9405 1.5123 2.1453 36 1 6.1512 1.4287 -2.1464 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244602515.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:55 Heat of formation + Delta-G solvation = -144.735929 kcal Electronic energy + Delta-G solvation = -24897.070952 eV Core-core repulsion = 20753.402645 eV Total energy + Delta-G solvation = -4143.668308 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -50.29459 -50.26686 -41.63890 -40.36135 -38.81762 -37.66108 -35.81999 -33.49012 -32.10207 -31.11226 -30.87564 -28.84444 -27.37667 -24.95701 -24.45214 -22.87545 -22.34281 -21.85505 -19.62355 -19.35007 -18.89708 -18.56142 -18.33399 -17.36623 -17.10928 -17.08788 -16.77583 -16.56076 -16.54650 -16.10486 -15.45162 -15.13917 -15.11211 -14.54265 -14.38795 -14.16882 -13.92909 -13.77744 -13.68669 -13.36139 -13.05106 -12.95281 -12.89170 -12.71687 -12.47919 -12.23895 -11.96513 -11.90706 -11.64746 -11.24375 -11.16518 -10.48769 -9.96842 -9.52217 -9.02636 -8.77038 -6.39621 -0.64290 -0.11180 0.67859 0.88550 1.20985 1.39696 1.45355 1.51550 1.56283 2.15265 2.24841 2.49884 2.77456 3.15367 3.43027 3.61394 3.63853 3.72553 4.01642 4.19693 4.25426 4.32009 4.39093 4.53459 4.59218 4.63871 4.69478 4.87295 4.95186 5.00990 5.02713 5.10294 5.28462 5.43813 5.54897 5.63292 5.92254 6.02753 6.14940 6.24886 6.34105 6.57615 6.78565 6.91689 8.14791 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.031604 B = 0.002675 C = 0.002526 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.752564 B =10463.236106 C =11080.038166 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.354 6.354 3 C 0.529 3.471 4 O -0.515 6.515 5 C -0.242 4.242 6 C 0.179 3.821 7 F -0.129 7.129 8 C -0.186 4.186 9 C 0.098 3.902 10 C -0.223 4.223 11 C -0.048 4.048 12 C -0.247 4.247 13 C 0.095 3.905 14 C -0.468 4.468 15 H 0.087 0.913 16 C 0.036 3.964 17 N -0.798 5.798 18 Si 0.984 3.016 19 H -0.259 1.259 20 H -0.267 1.267 21 H -0.257 1.257 22 C -0.199 4.199 23 C -0.066 4.066 24 C -0.182 4.182 25 C 0.180 3.820 26 F -0.127 7.127 27 H 0.140 0.860 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.160 0.840 31 H 0.130 0.870 32 H 0.107 0.893 33 H 0.296 0.704 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.372 -1.595 -1.622 11.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.269 6.269 3 C 0.372 3.628 4 O -0.404 6.404 5 C -0.245 4.245 6 C 0.159 3.841 7 F -0.107 7.107 8 C -0.205 4.205 9 C 0.098 3.902 10 C -0.224 4.224 11 C -0.066 4.066 12 C -0.266 4.266 13 C 0.092 3.908 14 C -0.495 4.495 15 H 0.105 0.895 16 C -0.183 4.183 17 N -0.422 5.422 18 Si 0.804 3.196 19 H -0.183 1.183 20 H -0.191 1.191 21 H -0.181 1.181 22 C -0.218 4.218 23 C -0.084 4.084 24 C -0.201 4.201 25 C 0.160 3.840 26 F -0.106 7.106 27 H 0.158 0.842 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.177 0.823 31 H 0.147 0.853 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.124 0.876 35 H 0.135 0.865 36 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -11.630 -1.480 -1.403 11.807 hybrid contribution 0.289 0.136 0.295 0.435 sum -11.341 -1.344 -1.108 11.474 Atomic orbital electron populations 1.23736 0.73679 1.06436 1.03063 1.86684 1.25917 1.31272 1.83066 1.20784 0.88435 0.82057 0.71499 1.90837 1.67024 1.36918 1.45589 1.18792 0.90406 1.21590 0.93692 1.16969 0.89525 0.98652 0.78966 1.91522 1.80555 1.93397 1.45246 1.21224 0.90666 1.07819 1.00752 1.18592 0.92769 0.87848 0.91019 1.18068 0.89417 1.21053 0.93881 1.20766 0.93797 0.95335 0.96741 1.20921 0.94450 1.14270 0.96985 1.18162 0.94012 0.86501 0.92140 1.20098 0.92271 1.34131 1.03015 0.89460 1.26902 1.05652 0.91985 0.93793 1.69805 1.40886 1.20672 1.10802 0.85199 0.75550 0.79783 0.79048 1.18329 1.19117 1.18094 1.21002 0.93463 1.09206 0.98170 1.20791 0.94051 0.96873 0.96697 1.21228 0.90566 1.07613 1.00684 1.16959 0.89575 0.98559 0.78900 1.91528 1.80511 1.93383 1.45141 0.84238 0.91417 0.91332 0.82295 0.85270 0.87462 0.89291 0.87604 0.86503 0.81598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.41 10.57 113.37 1.20 1.61 16 2 O -0.35 -9.50 10.58 -56.95 -0.60 -10.10 16 3 C 0.53 16.77 6.65 70.20 0.47 17.24 16 4 O -0.51 -18.22 16.90 19.75 0.33 -17.89 16 5 C -0.24 -7.63 5.77 -19.98 -0.12 -7.74 16 6 C 0.18 5.51 7.28 22.64 0.16 5.68 16 7 F -0.13 -3.93 16.82 44.97 0.76 -3.17 16 8 C -0.19 -5.69 9.38 22.53 0.21 -5.48 16 9 C 0.10 3.20 5.88 -20.01 -0.12 3.08 16 10 C -0.22 -8.47 5.90 -19.87 -0.12 -8.58 16 11 C -0.05 -1.84 9.35 22.23 0.21 -1.63 16 12 C -0.25 -10.65 9.73 22.47 0.22 -10.44 16 13 C 0.09 4.58 5.57 -21.27 -0.12 4.46 16 14 C -0.47 -22.41 9.03 23.39 0.21 -22.20 16 15 H 0.09 3.97 7.91 -2.91 -0.02 3.94 16 16 C 0.04 1.60 5.13 85.30 0.44 2.04 16 17 N -0.80 -37.30 10.96 21.85 0.24 -37.06 16 18 Si 0.98 33.72 29.60 68.60 2.03 35.75 16 19 H -0.26 -8.77 7.11 99.48 0.71 -8.06 16 20 H -0.27 -8.70 7.11 99.48 0.71 -7.99 16 21 H -0.26 -8.53 7.11 99.48 0.71 -7.83 16 22 C -0.20 -9.37 8.63 22.47 0.19 -9.17 16 23 C -0.07 -2.70 9.35 22.22 0.21 -2.49 16 24 C -0.18 -5.34 9.38 22.53 0.21 -5.13 16 25 C 0.18 5.40 7.28 22.64 0.16 5.56 16 26 F -0.13 -3.73 16.82 44.97 0.76 -2.97 16 27 H 0.14 1.41 8.14 -2.39 -0.02 1.39 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 30 H 0.16 4.48 6.15 -2.91 -0.02 4.46 16 31 H 0.13 3.96 6.15 -2.91 -0.02 3.94 16 32 H 0.11 4.30 8.06 -2.91 -0.02 4.28 16 33 H 0.30 12.41 8.29 -92.71 -0.77 11.64 16 34 H 0.11 5.20 6.17 -2.91 -0.02 5.18 16 35 H 0.12 4.15 6.15 -2.91 -0.02 4.13 16 36 H 0.17 4.20 6.15 -2.91 -0.02 4.18 16 Total: -1.00 -55.18 327.34 8.10 -47.08 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 1.16 Total: 21.55 kcal Atomic # 6 Polarization: -36.62 SS G_CDS: 3.43 Total: -33.20 kcal Atomic # 7 Polarization: -37.30 SS G_CDS: 0.24 Total: -37.06 kcal Atomic # 8 Polarization: -27.72 SS G_CDS: -0.27 Total: -27.99 kcal Atomic # 9 Polarization: -7.66 SS G_CDS: 1.51 Total: -6.14 kcal Atomic # 14 Polarization: 33.72 SS G_CDS: 2.03 Total: 35.75 kcal Total: -55.18 8.10 -47.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244602515.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.652 kcal (2) G-P(sol) polarization free energy of solvation -55.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds