Wall clock time and date at job start Tue Mar 31 2020 12:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34778 * 117.00257 * 2 1 4 4 O 1.21526 * 119.99905 * 0.02562 * 3 2 1 5 5 C 1.47268 * 119.99765 * 179.97438 * 3 2 1 6 6 C 1.40141 * 120.04720 * 269.99834 * 5 3 2 7 7 F 1.35105 * 120.02308 * 359.95927 * 6 5 3 8 8 C 1.37827 * 119.95390 * 179.97438 * 6 5 3 9 9 C 1.39748 * 120.04471 * 0.02562 * 8 6 5 10 10 C 1.47766 * 119.95153 * 179.70258 * 9 8 6 11 11 C 1.39210 * 120.34348 * 309.72075 * 10 9 8 12 12 C 1.38091 * 119.98342 * 179.74828 * 11 10 9 13 13 C 1.38920 * 120.67938 * 0.55661 * 12 11 10 14 14 C 1.36449 * 120.69676 * 359.70057 * 13 12 11 15 15 C 1.40762 * 119.98877 * 0.02562 * 14 13 12 16 16 C 1.40833 * 120.33447 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00254 * 153.60496 * 16 15 14 18 18 C 1.40152 * 119.99953 * 333.60786 * 16 15 14 19 19 N 1.30729 * 120.00035 * 344.42943 * 18 16 15 20 20 Si 1.86795 * 120.00068 * 164.42816 * 18 16 15 21 21 H 1.48500 * 109.47423 * 60.00041 * 20 18 16 22 22 H 1.48505 * 109.47309 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47288 * 299.99708 * 20 18 16 24 24 C 1.39754 * 120.09735 * 359.97438 * 9 8 6 25 25 C 1.37829 * 120.04221 * 0.02562 * 24 9 8 26 26 F 1.35101 * 120.02087 * 179.97438 * 25 24 9 27 27 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46832 * 299.99728 * 1 2 3 29 29 H 1.08995 * 109.46997 * 59.99519 * 1 2 3 30 30 H 1.08005 * 119.97722 * 179.97438 * 8 6 5 31 31 H 1.08007 * 120.00694 * 0.02562 * 11 10 9 32 32 H 1.07994 * 119.65802 * 180.27908 * 12 11 10 33 33 H 1.07999 * 119.65764 * 179.72166 * 13 12 11 34 34 H 1.08004 * 120.00439 * 180.02562 * 14 13 12 35 35 H 0.96998 * 119.99882 * 180.02562 * 19 18 16 36 36 H 1.07998 * 119.97577 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0640 1.2009 0.0000 4 8 1.4022 2.2201 0.0005 5 6 3.5347 1.2778 0.0006 6 6 4.2349 1.3147 1.2139 7 9 3.5613 1.2806 2.3845 8 6 5.6113 1.3862 1.2122 9 6 6.3086 1.4224 0.0016 10 6 7.7839 1.5057 0.0022 11 6 8.4336 2.4699 0.7678 12 6 9.8128 2.5377 0.7668 13 6 10.5652 1.6584 -0.0016 14 6 9.9570 0.7059 -0.7664 15 6 8.5530 0.6074 -0.7825 16 6 7.9177 -0.3732 -1.5687 17 1 6.9420 -0.7416 -1.2882 18 6 8.5517 -0.8712 -2.7152 19 7 9.5700 -0.2321 -3.2286 20 14 7.9418 -2.4479 -3.5095 21 1 6.5272 -2.2765 -3.9277 22 1 8.7751 -2.7575 -4.6991 23 1 8.0378 -3.5631 -2.5336 24 6 5.6123 1.3857 -1.2095 25 6 4.2359 1.3142 -1.2123 26 9 3.5631 1.2792 -2.3834 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 6.1514 1.4151 2.1471 31 1 7.8591 3.1619 1.3658 32 1 10.3115 3.2849 1.3662 33 1 11.6428 1.7290 0.0065 34 1 10.5529 0.0277 -1.3592 35 1 10.0086 -0.5765 -4.0223 36 1 6.1531 1.4133 -2.1439 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244603235.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:59 Heat of formation + Delta-G solvation = -134.583573 kcal Electronic energy + Delta-G solvation = -25831.804585 eV Core-core repulsion = 21688.576517 eV Total energy + Delta-G solvation = -4143.228068 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -48.90556 -48.79952 -40.33429 -38.83303 -37.15128 -36.34988 -33.98286 -32.22023 -30.33049 -29.65159 -29.13210 -27.53172 -25.68415 -23.91490 -22.66244 -21.37685 -21.01204 -20.17705 -18.18772 -17.63468 -17.27777 -17.20859 -17.03622 -15.88048 -15.73608 -15.56425 -15.35280 -15.13571 -14.92357 -14.65375 -14.17494 -13.83346 -13.62119 -13.20417 -12.91630 -12.75252 -12.57213 -12.29482 -11.87264 -11.75897 -11.61202 -11.57210 -11.28471 -11.19509 -10.97033 -10.85306 -10.65491 -10.56493 -9.90684 -9.72034 -9.43474 -8.79197 -8.48283 -7.66398 -7.53594 -7.03914 -4.64474 0.92632 1.34323 2.03408 2.51371 2.67132 2.78793 2.94247 2.97469 3.08379 3.73015 3.74438 3.92610 4.37939 4.63731 4.69801 5.00956 5.03471 5.09915 5.13627 5.39806 5.41459 5.55403 5.90203 5.98477 6.01621 6.10956 6.25146 6.26826 6.33114 6.53391 6.70523 6.82937 6.94927 7.05242 7.11146 7.29808 7.61855 7.63077 7.74730 7.85626 7.97257 8.32571 8.55246 8.65165 9.86649 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013081 B = 0.004896 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.993440 B = 5717.974273 C = 7237.081184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.348 6.348 3 C 0.529 3.471 4 O -0.492 6.492 5 C -0.221 4.221 6 C 0.167 3.833 7 F -0.132 7.132 8 C -0.178 4.178 9 C 0.110 3.890 10 C -0.213 4.213 11 C -0.059 4.059 12 C -0.241 4.241 13 C -0.094 4.094 14 C -0.155 4.155 15 C 0.138 3.862 16 C -0.448 4.448 17 H 0.086 0.914 18 C 0.078 3.922 19 N -0.777 5.777 20 Si 0.906 3.094 21 H -0.260 1.260 22 H -0.275 1.275 23 H -0.260 1.260 24 C -0.145 4.145 25 C 0.163 3.837 26 F -0.130 7.130 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.146 0.854 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.121 0.879 35 H 0.287 0.713 36 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 -1.089 3.233 8.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.264 6.264 3 C 0.372 3.628 4 O -0.379 6.379 5 C -0.224 4.224 6 C 0.147 3.853 7 F -0.110 7.110 8 C -0.197 4.197 9 C 0.109 3.891 10 C -0.215 4.215 11 C -0.077 4.077 12 C -0.261 4.261 13 C -0.113 4.113 14 C -0.174 4.174 15 C 0.135 3.865 16 C -0.476 4.476 17 H 0.104 0.896 18 C -0.143 4.143 19 N -0.401 5.401 20 Si 0.729 3.271 21 H -0.184 1.184 22 H -0.200 1.200 23 H -0.184 1.184 24 C -0.164 4.164 25 C 0.143 3.857 26 F -0.108 7.108 27 H 0.121 0.879 28 H 0.082 0.918 29 H 0.083 0.917 30 H 0.164 0.836 31 H 0.113 0.887 32 H 0.110 0.890 33 H 0.109 0.891 34 H 0.139 0.861 35 H 0.098 0.902 36 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.842 -0.803 3.010 8.438 hybrid contribution -0.658 -0.633 -0.470 1.027 sum -8.500 -1.436 2.540 8.987 Atomic orbital electron populations 1.23316 0.76267 1.03827 1.02610 1.86709 1.23382 1.32559 1.83732 1.20782 0.88459 0.81717 0.71873 1.90844 1.66579 1.36090 1.44380 1.18670 0.89855 1.20458 0.93420 1.16998 0.89577 0.99814 0.78909 1.91508 1.80562 1.93584 1.45392 1.21289 0.90551 1.07436 1.00422 1.18596 0.93919 0.86763 0.89772 1.18354 0.88349 1.03495 1.11298 1.20578 0.94108 0.96408 0.96588 1.20314 0.93481 1.04699 1.07576 1.20553 0.97752 0.96119 0.96871 1.21106 0.94710 1.00465 1.01149 1.17481 0.91496 0.89397 0.88153 1.19676 1.03951 1.17771 1.06161 0.89640 1.25997 0.93822 0.97680 0.96819 1.69739 1.17051 1.35461 1.17804 0.86361 0.80200 0.81619 0.78885 1.18433 1.20025 1.18438 1.21484 0.90105 1.03246 1.01523 1.17096 0.89743 0.99874 0.78942 1.91516 1.80514 1.93496 1.45314 0.87880 0.91787 0.91747 0.83606 0.88745 0.89022 0.89146 0.86079 0.90182 0.82296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 10.57 101.05 1.07 1.43 16 2 O -0.35 -5.43 10.58 -40.70 -0.43 -5.86 16 3 C 0.53 9.42 6.65 34.40 0.23 9.64 16 4 O -0.49 -9.46 16.90 -19.29 -0.33 -9.78 16 5 C -0.22 -3.99 5.77 -104.80 -0.60 -4.60 16 6 C 0.17 2.87 7.28 -39.02 -0.28 2.59 16 7 F -0.13 -2.20 16.82 2.25 0.04 -2.16 16 8 C -0.18 -3.05 9.47 -39.17 -0.37 -3.43 16 9 C 0.11 2.11 4.92 -104.87 -0.52 1.59 16 10 C -0.21 -4.52 5.51 -104.23 -0.57 -5.09 16 11 C -0.06 -1.17 9.51 -39.27 -0.37 -1.54 16 12 C -0.24 -4.81 10.03 -39.38 -0.39 -5.21 16 13 C -0.09 -1.97 9.96 -39.97 -0.40 -2.37 16 14 C -0.16 -3.57 8.62 -39.27 -0.34 -3.91 16 15 C 0.14 3.19 5.56 -106.55 -0.59 2.60 16 16 C -0.45 -10.30 7.13 -37.88 -0.27 -10.57 16 17 H 0.09 1.93 6.63 -52.49 -0.35 1.58 16 18 C 0.08 1.73 5.17 -17.30 -0.09 1.64 16 19 N -0.78 -17.78 10.95 55.56 0.61 -17.18 16 20 Si 0.91 17.06 29.59 -169.99 -5.03 12.03 16 21 H -0.26 -4.93 7.11 56.52 0.40 -4.53 16 22 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 23 H -0.26 -4.91 7.11 56.52 0.40 -4.50 16 24 C -0.14 -2.75 7.96 -39.16 -0.31 -3.06 16 25 C 0.16 3.00 7.28 -39.02 -0.28 2.71 16 26 F -0.13 -2.37 16.82 2.25 0.04 -2.34 16 27 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.15 2.25 8.04 -52.48 -0.42 1.83 16 31 H 0.09 1.65 8.04 -52.48 -0.42 1.23 16 32 H 0.09 1.61 8.06 -52.49 -0.42 1.19 16 33 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 34 H 0.12 2.87 6.21 -52.48 -0.33 2.54 16 35 H 0.29 6.01 8.29 -40.82 -0.34 5.67 16 36 H 0.16 3.14 7.30 -52.49 -0.38 2.76 16 LS Contribution 329.40 15.07 4.96 4.96 Total: -1.00 -25.29 329.40 -7.39 -32.68 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -3.15 Total: 5.22 kcal Atomic # 6 Polarization: -13.47 SS G_CDS: -4.11 Total: -17.58 kcal Atomic # 7 Polarization: -17.78 SS G_CDS: 0.61 Total: -17.18 kcal Atomic # 8 Polarization: -14.89 SS G_CDS: -0.76 Total: -15.64 kcal Atomic # 9 Polarization: -4.57 SS G_CDS: 0.08 Total: -4.49 kcal Atomic # 14 Polarization: 17.06 SS G_CDS: -5.03 Total: 12.03 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -25.29 -7.39 -32.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244603235.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.902 kcal (2) G-P(sol) polarization free energy of solvation -25.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -127.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.681 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds