Wall clock time and date at job start Tue Mar 31 2020 12:39:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45207 * 1 3 3 C 1.34778 * 117.00257 * 2 1 4 4 O 1.21526 * 119.99905 * 0.02562 * 3 2 1 5 5 C 1.47268 * 119.99765 * 179.97438 * 3 2 1 6 6 C 1.40141 * 120.04720 * 269.99834 * 5 3 2 7 7 F 1.35105 * 120.02308 * 359.95927 * 6 5 3 8 8 C 1.37827 * 119.95390 * 179.97438 * 6 5 3 9 9 C 1.39748 * 120.04471 * 0.02562 * 8 6 5 10 10 C 1.47766 * 119.95153 * 179.70258 * 9 8 6 11 11 C 1.39210 * 120.34348 * 309.72075 * 10 9 8 12 12 C 1.38091 * 119.98342 * 179.74828 * 11 10 9 13 13 C 1.38920 * 120.67938 * 0.55661 * 12 11 10 14 14 C 1.36449 * 120.69676 * 359.70057 * 13 12 11 15 15 C 1.40762 * 119.98877 * 0.02562 * 14 13 12 16 16 C 1.40833 * 120.33447 * 180.02562 * 15 14 13 17 17 H 1.08001 * 120.00254 * 153.60496 * 16 15 14 18 18 C 1.40152 * 119.99953 * 333.60786 * 16 15 14 19 19 N 1.30729 * 120.00035 * 344.42943 * 18 16 15 20 20 Si 1.86795 * 120.00068 * 164.42816 * 18 16 15 21 21 H 1.48500 * 109.47423 * 60.00041 * 20 18 16 22 22 H 1.48505 * 109.47309 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47288 * 299.99708 * 20 18 16 24 24 C 1.39754 * 120.09735 * 359.97438 * 9 8 6 25 25 C 1.37829 * 120.04221 * 0.02562 * 24 9 8 26 26 F 1.35101 * 120.02087 * 179.97438 * 25 24 9 27 27 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46832 * 299.99728 * 1 2 3 29 29 H 1.08995 * 109.46997 * 59.99519 * 1 2 3 30 30 H 1.08005 * 119.97722 * 179.97438 * 8 6 5 31 31 H 1.08007 * 120.00694 * 0.02562 * 11 10 9 32 32 H 1.07994 * 119.65802 * 180.27908 * 12 11 10 33 33 H 1.07999 * 119.65764 * 179.72166 * 13 12 11 34 34 H 1.08004 * 120.00439 * 180.02562 * 14 13 12 35 35 H 0.96998 * 119.99882 * 180.02562 * 19 18 16 36 36 H 1.07998 * 119.97577 * 180.02562 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0640 1.2009 0.0000 4 8 1.4022 2.2201 0.0005 5 6 3.5347 1.2778 0.0006 6 6 4.2349 1.3147 1.2139 7 9 3.5613 1.2806 2.3845 8 6 5.6113 1.3862 1.2122 9 6 6.3086 1.4224 0.0016 10 6 7.7839 1.5057 0.0022 11 6 8.4336 2.4699 0.7678 12 6 9.8128 2.5377 0.7668 13 6 10.5652 1.6584 -0.0016 14 6 9.9570 0.7059 -0.7664 15 6 8.5530 0.6074 -0.7825 16 6 7.9177 -0.3732 -1.5687 17 1 6.9420 -0.7416 -1.2882 18 6 8.5517 -0.8712 -2.7152 19 7 9.5700 -0.2321 -3.2286 20 14 7.9418 -2.4479 -3.5095 21 1 6.5272 -2.2765 -3.9277 22 1 8.7751 -2.7575 -4.6991 23 1 8.0378 -3.5631 -2.5336 24 6 5.6123 1.3857 -1.2095 25 6 4.2359 1.3142 -1.2123 26 9 3.5631 1.2792 -2.3834 27 1 -0.3634 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 6.1514 1.4151 2.1471 31 1 7.8591 3.1619 1.3658 32 1 10.3115 3.2849 1.3662 33 1 11.6428 1.7290 0.0065 34 1 10.5529 0.0277 -1.3592 35 1 10.0086 -0.5765 -4.0223 36 1 6.1531 1.4133 -2.1439 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244603235.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:39:58 Heat of formation + Delta-G solvation = -143.555683 kcal Electronic energy + Delta-G solvation = -25832.193645 eV Core-core repulsion = 21688.576517 eV Total energy + Delta-G solvation = -4143.617128 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -50.28033 -50.25600 -41.65766 -40.34635 -38.68138 -37.66213 -35.62375 -33.72573 -31.86059 -31.20923 -30.61036 -28.61637 -27.30070 -25.36414 -24.11676 -22.78325 -22.61833 -21.70566 -19.57686 -19.18719 -18.78722 -18.61469 -18.35064 -17.26239 -17.11936 -17.05916 -16.77825 -16.55414 -16.42711 -16.05112 -15.70124 -15.24458 -15.11604 -14.42516 -14.38667 -14.28371 -14.03062 -13.49346 -13.40402 -13.21073 -13.04329 -13.00110 -12.83395 -12.73199 -12.55053 -12.17010 -11.97158 -11.96388 -11.50046 -11.33671 -11.07962 -10.28896 -9.91910 -9.32151 -9.15030 -8.67442 -6.35263 -0.53124 -0.09485 0.65595 0.93221 1.10515 1.40199 1.47874 1.48108 1.54949 2.18082 2.25886 2.49100 2.73427 3.18023 3.42259 3.62712 3.65822 3.76177 4.11046 4.19313 4.25413 4.47749 4.50221 4.52107 4.58694 4.64684 4.71347 4.85976 4.98561 5.02072 5.10531 5.27273 5.32021 5.47975 5.57910 5.66056 5.99886 6.08189 6.20857 6.32121 6.32229 6.65686 6.87417 6.98890 8.25268 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.013081 B = 0.004896 C = 0.003868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.993440 B = 5717.974273 C = 7237.081184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.354 6.354 3 C 0.530 3.470 4 O -0.512 6.512 5 C -0.222 4.222 6 C 0.172 3.828 7 F -0.125 7.125 8 C -0.161 4.161 9 C 0.097 3.903 10 C -0.216 4.216 11 C -0.063 4.063 12 C -0.241 4.241 13 C -0.099 4.099 14 C -0.183 4.183 15 C 0.112 3.888 16 C -0.472 4.472 17 H 0.081 0.919 18 C 0.046 3.954 19 N -0.808 5.808 20 Si 0.962 3.038 21 H -0.262 1.262 22 H -0.268 1.268 23 H -0.260 1.260 24 C -0.146 4.146 25 C 0.161 3.839 26 F -0.131 7.131 27 H 0.139 0.861 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.169 0.831 31 H 0.123 0.877 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.104 0.896 35 H 0.291 0.709 36 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.854 -1.064 4.504 9.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.270 6.270 3 C 0.373 3.627 4 O -0.401 6.401 5 C -0.225 4.225 6 C 0.152 3.848 7 F -0.103 7.103 8 C -0.179 4.179 9 C 0.097 3.903 10 C -0.217 4.217 11 C -0.081 4.081 12 C -0.260 4.260 13 C -0.117 4.117 14 C -0.203 4.203 15 C 0.109 3.891 16 C -0.500 4.500 17 H 0.099 0.901 18 C -0.172 4.172 19 N -0.433 5.433 20 Si 0.783 3.217 21 H -0.186 1.186 22 H -0.192 1.192 23 H -0.184 1.184 24 C -0.165 4.165 25 C 0.141 3.859 26 F -0.110 7.110 27 H 0.157 0.843 28 H 0.089 0.911 29 H 0.086 0.914 30 H 0.186 0.814 31 H 0.141 0.859 32 H 0.139 0.861 33 H 0.128 0.872 34 H 0.122 0.878 35 H 0.102 0.898 36 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.987 -0.786 4.289 9.989 hybrid contribution -0.415 -0.566 -0.756 1.032 sum -9.402 -1.352 3.533 10.134 Atomic orbital electron populations 1.23750 0.73553 1.06457 1.03152 1.86687 1.26037 1.31208 1.83034 1.20720 0.88302 0.82138 0.71582 1.90833 1.66887 1.36798 1.45535 1.18853 0.90548 1.19570 0.93519 1.16929 0.89546 0.99465 0.78882 1.91530 1.80423 1.93466 1.44890 1.21380 0.90473 1.05650 1.00435 1.18540 0.93193 0.88074 0.90515 1.18593 0.89365 1.03138 1.10651 1.20932 0.94512 0.96255 0.96375 1.20689 0.93728 1.04561 1.06984 1.20831 0.99031 0.95581 0.96267 1.21091 0.94904 1.01668 1.02592 1.17775 0.91962 0.90271 0.89076 1.19747 1.04172 1.19003 1.07097 0.90106 1.26599 0.93870 0.99761 0.96980 1.69784 1.18254 1.36726 1.18519 0.85527 0.79507 0.78432 0.78216 1.18630 1.19189 1.18410 1.21339 0.90375 1.03625 1.01139 1.17037 0.89467 1.00219 0.79167 1.91508 1.80460 1.93550 1.45449 0.84268 0.91105 0.91418 0.81397 0.85872 0.86121 0.87220 0.87781 0.89788 0.83779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.45 10.57 113.37 1.20 1.65 16 2 O -0.35 -10.38 10.58 -56.89 -0.60 -10.98 16 3 C 0.53 18.07 6.65 70.20 0.47 18.54 16 4 O -0.51 -19.00 16.90 19.75 0.33 -18.67 16 5 C -0.22 -7.73 5.77 -19.98 -0.12 -7.84 16 6 C 0.17 5.57 7.28 22.63 0.16 5.73 16 7 F -0.12 -3.84 16.82 44.97 0.76 -3.08 16 8 C -0.16 -5.18 9.47 22.54 0.21 -4.96 16 9 C 0.10 3.65 4.92 -20.03 -0.10 3.55 16 10 C -0.22 -9.03 5.51 -19.61 -0.11 -9.14 16 11 C -0.06 -2.37 9.51 22.47 0.21 -2.15 16 12 C -0.24 -9.07 10.03 22.40 0.22 -8.85 16 13 C -0.10 -4.07 9.96 22.02 0.22 -3.85 16 14 C -0.18 -8.62 8.62 22.47 0.19 -8.43 16 15 C 0.11 5.29 5.56 -21.12 -0.12 5.17 16 16 C -0.47 -22.35 7.13 23.37 0.17 -22.19 16 17 H 0.08 3.76 6.63 -2.91 -0.02 3.74 16 18 C 0.05 2.08 5.17 85.32 0.44 2.52 16 19 N -0.81 -38.25 10.95 21.86 0.24 -38.02 16 20 Si 0.96 35.54 29.59 68.60 2.03 37.57 16 21 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 22 H -0.27 -9.42 7.11 99.48 0.71 -8.72 16 23 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 24 C -0.15 -5.56 7.96 22.54 0.18 -5.38 16 25 C 0.16 5.83 7.28 22.63 0.16 6.00 16 26 F -0.13 -4.76 16.82 44.97 0.76 -4.01 16 27 H 0.14 1.67 8.14 -2.39 -0.02 1.65 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 30 H 0.17 4.64 8.04 -2.91 -0.02 4.62 16 31 H 0.12 3.88 8.04 -2.91 -0.02 3.86 16 32 H 0.12 3.81 8.06 -2.91 -0.02 3.79 16 33 H 0.11 3.97 8.06 -2.91 -0.02 3.95 16 34 H 0.10 5.15 6.21 -2.91 -0.02 5.14 16 35 H 0.29 12.59 8.29 -92.71 -0.77 11.82 16 36 H 0.14 5.91 7.30 -2.91 -0.02 5.89 16 Total: -1.00 -54.32 329.40 8.06 -46.26 By element: Atomic # 1 Polarization: 19.41 SS G_CDS: 1.14 Total: 20.55 kcal Atomic # 6 Polarization: -33.04 SS G_CDS: 3.41 Total: -29.63 kcal Atomic # 7 Polarization: -38.25 SS G_CDS: 0.24 Total: -38.02 kcal Atomic # 8 Polarization: -29.38 SS G_CDS: -0.27 Total: -29.65 kcal Atomic # 9 Polarization: -8.60 SS G_CDS: 1.51 Total: -7.08 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.03 Total: 37.57 kcal Total: -54.32 8.06 -46.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244603235.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -97.297 kcal (2) G-P(sol) polarization free energy of solvation -54.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds