Wall clock time and date at job start Tue Mar 31 2020 11:55:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47081 * 2 1 4 4 O 1.42910 * 109.47017 * 180.02562 * 3 2 1 5 5 C 1.35708 * 116.99961 * 180.02562 * 4 3 2 6 6 C 1.38671 * 119.59964 * 180.02562 * 5 4 3 7 7 C 1.39738 * 118.95418 * 180.27511 * 6 5 4 8 8 C 1.48033 * 120.90144 * 179.72542 * 7 6 5 9 9 C 1.39851 * 119.44308 * 312.87865 * 8 7 6 10 10 C 1.36644 * 119.46293 * 179.97438 * 9 8 7 11 11 C 1.41281 * 118.41174 * 0.02562 * 10 9 8 12 12 C 1.41058 * 120.56198 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00451 * 150.43507 * 12 11 10 14 14 C 1.40072 * 119.99908 * 330.44038 * 12 11 10 15 15 N 1.30764 * 120.00110 * 345.04877 * 14 12 11 16 16 Si 1.86796 * 119.99989 * 165.04877 * 14 12 11 17 17 H 1.48500 * 109.47044 * 90.00131 * 16 14 12 18 18 H 1.48499 * 109.47008 * 209.99691 * 16 14 12 19 19 H 1.48501 * 109.47319 * 330.00039 * 16 14 12 20 20 C 1.40966 * 118.88517 * 359.97438 * 11 10 9 21 21 N 1.31256 * 120.39494 * 359.72587 * 20 11 10 22 22 C 1.40223 * 118.19672 * 359.50990 * 7 6 5 23 23 Cl 1.73594 * 120.45462 * 180.21733 * 22 7 6 24 24 C 1.37954 * 119.08804 * 0.48497 * 22 7 6 25 25 N 1.32003 * 120.96111 * 359.75567 * 24 22 7 26 26 H 1.08995 * 109.47284 * 59.99675 * 1 2 3 27 27 H 1.09000 * 109.46897 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46842 * 299.99892 * 1 2 3 29 29 H 1.09002 * 109.46842 * 240.00107 * 2 1 3 30 30 H 1.08995 * 109.47284 * 120.00325 * 2 1 3 31 31 H 1.09002 * 109.47195 * 60.00323 * 3 2 1 32 32 H 1.08994 * 109.47668 * 299.99877 * 3 2 1 33 33 H 1.07994 * 120.52247 * 359.97438 * 6 5 4 34 34 H 1.07991 * 120.26981 * 0.03063 * 9 8 7 35 35 H 1.08000 * 120.79806 * 180.02562 * 10 9 8 36 36 H 0.96993 * 120.00215 * 180.02562 * 15 14 12 37 37 H 1.08001 * 119.80469 * 179.97438 * 20 11 10 38 38 H 1.07996 * 119.51966 * 179.72636 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0852 2.6516 -0.0001 6 6 5.4705 2.7145 -0.0012 7 6 6.0908 3.9666 0.0051 8 6 7.5665 4.0839 0.0103 9 6 8.3146 3.3092 0.9026 10 6 9.6768 3.4168 0.9074 11 6 10.2832 4.3160 0.0020 12 6 11.6857 4.4634 -0.0313 13 1 12.1784 4.7350 -0.9532 14 6 12.4394 4.2576 1.1313 15 7 11.8469 4.2192 2.2963 16 14 14.2908 4.0377 1.0173 17 1 14.9539 5.3625 1.1203 18 1 14.7547 3.1646 2.1254 19 1 14.6358 3.4113 -0.2842 20 6 9.4633 5.0635 -0.8675 21 7 8.1589 4.9199 -0.8375 22 6 5.2776 5.1090 0.0018 23 17 5.9864 6.6936 0.0037 24 6 3.9066 4.9562 0.0026 25 7 3.3570 3.7560 0.0017 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 6.0606 1.8100 -0.0020 34 1 7.8197 2.6308 1.5816 35 1 10.2755 2.8286 1.5869 36 1 12.3688 4.0771 3.1014 37 1 9.9112 5.7555 -1.5653 38 1 3.2736 5.8312 0.0046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244604991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:00 Heat of formation + Delta-G solvation = -0.488306 kcal Electronic energy + Delta-G solvation = -22755.799057 eV Core-core repulsion = 19202.475227 eV Total energy + Delta-G solvation = -3553.323830 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.39385 -38.61772 -37.74700 -35.87101 -34.42364 -34.03513 -32.64095 -30.83876 -29.96263 -29.59307 -26.73769 -25.84479 -23.47268 -22.98125 -21.70171 -21.53789 -20.80419 -18.09291 -17.53241 -16.82921 -16.41480 -16.09523 -15.56464 -15.07055 -14.65532 -14.59377 -14.31700 -14.03096 -13.81666 -13.24449 -12.88318 -12.71034 -12.47305 -12.33895 -12.00074 -11.87349 -11.79619 -11.69675 -11.47267 -11.26779 -11.19190 -11.15088 -10.78497 -10.56183 -10.52610 -10.05046 -9.59738 -9.42930 -9.37091 -8.43177 -8.16316 -8.09523 -7.59892 -7.05444 -4.67292 1.28638 1.33149 2.50377 2.64425 2.87172 2.92290 2.96108 3.03149 3.14218 3.70846 3.93779 4.40334 4.43813 4.74540 4.74695 4.98262 5.01731 5.27800 5.29595 5.30813 5.45269 5.47082 5.50949 5.72914 5.80851 5.88187 5.93223 5.96567 6.06373 6.33200 6.39434 6.58040 6.69326 6.74280 6.87319 7.11803 7.36580 7.50779 7.68150 7.75209 7.97112 8.23714 8.44757 8.51819 9.44074 9.85390 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.002975 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.294597 B = 9410.474217 C =10534.518878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.071 3.929 4 O -0.307 6.307 5 C 0.320 3.680 6 C -0.184 4.184 7 C 0.105 3.895 8 C -0.020 4.020 9 C -0.110 4.110 10 C -0.140 4.140 11 C 0.077 3.923 12 C -0.436 4.436 13 H 0.088 0.912 14 C 0.073 3.927 15 N -0.778 5.778 16 Si 0.915 3.085 17 H -0.266 1.266 18 H -0.273 1.273 19 H -0.257 1.257 20 C -0.011 4.011 21 N -0.427 5.427 22 C -0.114 4.114 23 Cl -0.043 7.043 24 C 0.143 3.857 25 N -0.546 5.546 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.145 0.855 34 H 0.100 0.900 35 H 0.123 0.877 36 H 0.288 0.712 37 H 0.131 0.869 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.825 -4.110 -1.038 13.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.004 4.004 4 O -0.215 6.215 5 C 0.142 3.858 6 C -0.206 4.206 7 C 0.097 3.903 8 C -0.154 4.154 9 C -0.131 4.131 10 C -0.165 4.165 11 C 0.073 3.927 12 C -0.465 4.465 13 H 0.106 0.894 14 C -0.148 4.148 15 N -0.401 5.401 16 Si 0.739 3.261 17 H -0.191 1.191 18 H -0.198 1.198 19 H -0.181 1.181 20 C -0.177 4.177 21 N -0.134 5.134 22 C -0.145 4.145 23 Cl -0.014 7.014 24 C -0.012 4.012 25 N -0.270 5.270 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.162 0.838 34 H 0.118 0.882 35 H 0.141 0.859 36 H 0.099 0.901 37 H 0.149 0.851 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -14.068 -3.893 -1.319 14.657 hybrid contribution 2.166 -0.196 0.780 2.310 sum -11.903 -4.090 -0.539 12.597 Atomic orbital electron populations 1.21667 0.94358 1.02217 1.02266 1.21529 0.96023 0.95312 1.03504 1.22641 0.77791 0.97571 1.02427 1.86214 1.22408 1.24748 1.88116 1.19588 0.89029 0.84354 0.92786 1.21098 0.91331 0.98627 1.09561 1.18694 0.93036 0.89789 0.88802 1.18318 0.89161 1.05031 1.02846 1.21186 0.94998 0.98740 0.98158 1.21204 0.92828 1.00102 1.02375 1.18634 0.94357 0.88951 0.90807 1.19670 0.91468 1.38958 0.96451 0.89407 1.26077 1.02136 0.91976 0.94633 1.69749 1.39244 1.32019 0.99114 0.86175 0.80921 0.79453 0.79562 1.19108 1.19829 1.18110 1.22523 0.87871 1.02736 1.04573 1.67002 1.12866 1.14465 1.19075 1.21969 0.93452 0.88332 1.10714 1.98355 1.84255 1.21959 1.96869 1.22115 0.90652 0.93971 0.94495 1.67289 1.40041 0.98200 1.21511 0.92376 0.91935 0.92370 0.90990 0.90986 0.91747 0.91762 0.83751 0.88189 0.85944 0.90138 0.85113 0.82162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.67 16 2 C -0.13 -1.14 6.30 -26.73 -0.17 -1.31 16 3 C 0.07 0.83 5.31 37.16 0.20 1.03 16 4 O -0.31 -4.60 10.11 -18.83 -0.19 -4.79 16 5 C 0.32 5.33 7.48 -17.20 -0.13 5.20 16 6 C -0.18 -3.28 9.47 -38.86 -0.37 -3.65 16 7 C 0.11 2.09 5.63 -104.57 -0.59 1.50 16 8 C -0.02 -0.44 5.97 -82.74 -0.49 -0.94 16 9 C -0.11 -2.47 9.44 -39.55 -0.37 -2.85 16 10 C -0.14 -3.40 8.70 -39.00 -0.34 -3.74 16 11 C 0.08 1.92 5.53 -106.64 -0.59 1.33 16 12 C -0.44 -10.52 9.05 -37.83 -0.34 -10.86 16 13 H 0.09 1.99 7.89 -52.49 -0.41 1.58 16 14 C 0.07 1.66 5.18 -17.32 -0.09 1.57 16 15 N -0.78 -18.54 11.17 55.55 0.62 -17.92 16 16 Si 0.92 17.02 29.59 -169.99 -5.03 11.99 16 17 H -0.27 -4.91 7.11 56.52 0.40 -4.51 16 18 H -0.27 -4.99 7.11 56.52 0.40 -4.59 16 19 H -0.26 -4.75 7.11 56.52 0.40 -4.35 16 20 C -0.01 -0.26 10.97 -16.77 -0.18 -0.45 16 21 N -0.43 -10.05 8.87 -9.09 -0.08 -10.13 16 22 C -0.11 -2.08 6.36 -38.94 -0.25 -2.33 16 23 Cl -0.04 -0.79 27.12 -51.86 -1.41 -2.20 16 24 C 0.14 2.25 10.97 -17.58 -0.19 2.06 16 25 N -0.55 -8.80 9.19 -13.39 -0.12 -8.92 16 26 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 32 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 33 H 0.14 2.43 8.02 -52.49 -0.42 2.01 16 34 H 0.10 2.01 7.98 -52.49 -0.42 1.59 16 35 H 0.12 3.00 6.54 -52.49 -0.34 2.66 16 36 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 37 H 0.13 2.89 8.06 -52.49 -0.42 2.47 16 38 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 345.39 15.07 5.21 5.21 Total: -1.00 -26.49 345.39 -9.08 -35.57 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -4.53 Total: 5.28 kcal Atomic # 6 Polarization: -10.55 SS G_CDS: -3.54 Total: -14.09 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.42 Total: -36.97 kcal Atomic # 8 Polarization: -4.60 SS G_CDS: -0.19 Total: -4.79 kcal Atomic # 14 Polarization: 17.02 SS G_CDS: -5.03 Total: 11.99 kcal Atomic # 17 Polarization: -0.79 SS G_CDS: -1.41 Total: -2.20 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -26.49 -9.08 -35.57 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244604991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.081 kcal (2) G-P(sol) polarization free energy of solvation -26.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.569 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds