Wall clock time and date at job start Tue Mar 31 2020 11:54:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47081 * 2 1 4 4 O 1.42910 * 109.47017 * 180.02562 * 3 2 1 5 5 C 1.35708 * 116.99961 * 180.02562 * 4 3 2 6 6 C 1.38671 * 119.59964 * 180.02562 * 5 4 3 7 7 C 1.39738 * 118.95418 * 180.27511 * 6 5 4 8 8 C 1.48033 * 120.90144 * 179.72542 * 7 6 5 9 9 C 1.39851 * 119.44308 * 312.87865 * 8 7 6 10 10 C 1.36644 * 119.46293 * 179.97438 * 9 8 7 11 11 C 1.41281 * 118.41174 * 0.02562 * 10 9 8 12 12 C 1.41058 * 120.56198 * 179.97438 * 11 10 9 13 13 H 1.07996 * 120.00451 * 150.43507 * 12 11 10 14 14 C 1.40072 * 119.99908 * 330.44038 * 12 11 10 15 15 N 1.30764 * 120.00110 * 345.04877 * 14 12 11 16 16 Si 1.86796 * 119.99989 * 165.04877 * 14 12 11 17 17 H 1.48500 * 109.47044 * 90.00131 * 16 14 12 18 18 H 1.48499 * 109.47008 * 209.99691 * 16 14 12 19 19 H 1.48501 * 109.47319 * 330.00039 * 16 14 12 20 20 C 1.40966 * 118.88517 * 359.97438 * 11 10 9 21 21 N 1.31256 * 120.39494 * 359.72587 * 20 11 10 22 22 C 1.40223 * 118.19672 * 359.50990 * 7 6 5 23 23 Cl 1.73594 * 120.45462 * 180.21733 * 22 7 6 24 24 C 1.37954 * 119.08804 * 0.48497 * 22 7 6 25 25 N 1.32003 * 120.96111 * 359.75567 * 24 22 7 26 26 H 1.08995 * 109.47284 * 59.99675 * 1 2 3 27 27 H 1.09000 * 109.46897 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.46842 * 299.99892 * 1 2 3 29 29 H 1.09002 * 109.46842 * 240.00107 * 2 1 3 30 30 H 1.08995 * 109.47284 * 120.00325 * 2 1 3 31 31 H 1.09002 * 109.47195 * 60.00323 * 3 2 1 32 32 H 1.08994 * 109.47668 * 299.99877 * 3 2 1 33 33 H 1.07994 * 120.52247 * 359.97438 * 6 5 4 34 34 H 1.07991 * 120.26981 * 0.03063 * 9 8 7 35 35 H 1.08000 * 120.79806 * 180.02562 * 10 9 8 36 36 H 0.96993 * 120.00215 * 180.02562 * 15 14 12 37 37 H 1.08001 * 119.80469 * 179.97438 * 20 11 10 38 38 H 1.07996 * 119.51966 * 179.72636 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4424 -0.0006 5 6 4.0852 2.6516 -0.0001 6 6 5.4705 2.7145 -0.0012 7 6 6.0908 3.9666 0.0051 8 6 7.5665 4.0839 0.0103 9 6 8.3146 3.3092 0.9026 10 6 9.6768 3.4168 0.9074 11 6 10.2832 4.3160 0.0020 12 6 11.6857 4.4634 -0.0313 13 1 12.1784 4.7350 -0.9532 14 6 12.4394 4.2576 1.1313 15 7 11.8469 4.2192 2.2963 16 14 14.2908 4.0377 1.0173 17 1 14.9539 5.3625 1.1203 18 1 14.7547 3.1646 2.1254 19 1 14.6358 3.4113 -0.2842 20 6 9.4633 5.0635 -0.8675 21 7 8.1589 4.9199 -0.8375 22 6 5.2776 5.1090 0.0018 23 17 5.9864 6.6936 0.0037 24 6 3.9066 4.9562 0.0026 25 7 3.3570 3.7560 0.0017 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6767 1.9563 0.8900 32 1 1.6768 1.9563 -0.8899 33 1 6.0606 1.8100 -0.0020 34 1 7.8197 2.6308 1.5816 35 1 10.2755 2.8286 1.5869 36 1 12.3688 4.0771 3.1014 37 1 9.9112 5.7555 -1.5653 38 1 3.2736 5.8312 0.0046 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244604991.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:54:59 Heat of formation + Delta-G solvation = -13.942571 kcal Electronic energy + Delta-G solvation = -22756.382477 eV Core-core repulsion = 19202.475227 eV Total energy + Delta-G solvation = -3553.907251 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.72486 -40.27130 -39.07328 -37.27294 -36.14202 -34.83702 -34.17350 -32.64018 -31.40842 -31.14863 -27.94366 -27.22585 -24.90029 -24.48913 -23.31765 -22.67732 -22.17479 -19.46443 -19.28825 -18.17774 -17.50285 -17.45626 -17.22985 -16.70222 -16.14714 -15.70517 -15.61750 -15.44372 -15.16310 -14.44894 -14.37625 -14.17758 -13.73751 -13.55972 -13.41253 -13.33329 -13.24084 -12.96450 -12.92951 -12.80160 -12.30585 -12.13576 -12.01266 -11.95646 -11.76914 -11.49894 -11.26068 -10.88942 -10.80393 -10.26488 -9.96589 -9.49382 -9.31793 -8.77525 -6.50367 -0.18937 -0.01635 0.80044 1.07446 1.24929 1.39746 1.49042 1.55203 1.94760 2.15874 2.52348 2.71721 3.18308 3.51327 3.61673 3.84819 3.91133 3.99283 4.02305 4.21014 4.37726 4.45478 4.56226 4.59107 4.64144 4.69416 4.74074 4.83576 4.92635 5.00901 5.10898 5.12739 5.19616 5.19942 5.31850 5.38222 5.70548 5.86357 5.93055 6.15517 6.42039 6.64475 6.66113 6.70130 7.61615 8.16680 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.002975 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.294597 B = 9410.474217 C =10534.518878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.065 3.935 4 O -0.312 6.312 5 C 0.324 3.676 6 C -0.187 4.187 7 C 0.082 3.918 8 C -0.017 4.017 9 C -0.114 4.114 10 C -0.155 4.155 11 C 0.053 3.947 12 C -0.466 4.466 13 H 0.092 0.908 14 C 0.036 3.964 15 N -0.811 5.811 16 Si 0.989 3.011 17 H -0.261 1.261 18 H -0.266 1.266 19 H -0.255 1.255 20 C -0.028 4.028 21 N -0.435 5.435 22 C -0.127 4.127 23 Cl -0.049 7.049 24 C 0.159 3.841 25 N -0.538 5.538 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.066 0.934 32 H 0.066 0.934 33 H 0.149 0.851 34 H 0.120 0.880 35 H 0.113 0.887 36 H 0.295 0.705 37 H 0.140 0.860 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.222 -4.678 -1.001 15.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.009 4.009 4 O -0.220 6.220 5 C 0.146 3.854 6 C -0.209 4.209 7 C 0.073 3.927 8 C -0.152 4.152 9 C -0.134 4.134 10 C -0.180 4.180 11 C 0.048 3.952 12 C -0.495 4.495 13 H 0.110 0.890 14 C -0.182 4.182 15 N -0.435 5.435 16 Si 0.809 3.191 17 H -0.185 1.185 18 H -0.190 1.190 19 H -0.178 1.178 20 C -0.192 4.192 21 N -0.142 5.142 22 C -0.157 4.157 23 Cl -0.021 7.021 24 C 0.003 3.997 25 N -0.263 5.263 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.167 0.833 34 H 0.138 0.862 35 H 0.131 0.869 36 H 0.106 0.894 37 H 0.158 0.842 38 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -15.482 -4.468 -1.292 16.166 hybrid contribution 2.335 -0.068 0.768 2.459 sum -13.148 -4.536 -0.524 13.918 Atomic orbital electron populations 1.21663 0.92601 1.03252 1.02639 1.21554 0.97379 0.93428 1.03578 1.22944 0.75874 0.99532 1.02583 1.86229 1.24360 1.23835 1.87567 1.19630 0.88803 0.85101 0.91863 1.21113 0.92147 0.98103 1.09500 1.18670 0.91768 0.91293 0.90971 1.18734 0.90746 1.03902 1.01807 1.21407 0.94538 0.99052 0.98438 1.21222 0.93609 1.00510 1.02702 1.18912 0.95206 0.89571 0.91476 1.19932 0.91655 1.40521 0.97364 0.88951 1.26918 1.06631 0.90901 0.93774 1.69791 1.41220 1.32556 0.99927 0.85086 0.74909 0.79510 0.79633 1.18544 1.19045 1.17834 1.22710 0.88225 1.03234 1.05079 1.67048 1.12649 1.14990 1.19548 1.22103 0.94330 0.87634 1.11611 1.98351 1.84528 1.22235 1.96959 1.22616 0.89962 0.94886 0.92240 1.67434 1.39675 0.98188 1.20990 0.92024 0.90605 0.92001 0.90961 0.90919 0.91514 0.91593 0.83311 0.86179 0.86874 0.89361 0.84241 0.78678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.91 71.98 0.71 -0.93 16 2 C -0.12 -1.93 6.30 30.59 0.19 -1.74 16 3 C 0.07 1.39 5.31 71.98 0.38 1.77 16 4 O -0.31 -8.77 10.11 -90.29 -0.91 -9.69 16 5 C 0.32 10.21 7.48 84.73 0.63 10.84 16 6 C -0.19 -6.47 9.47 22.74 0.22 -6.26 16 7 C 0.08 3.18 5.63 -19.83 -0.11 3.07 16 8 C -0.02 -0.77 5.97 41.96 0.25 -0.52 16 9 C -0.11 -5.20 9.44 22.29 0.21 -4.99 16 10 C -0.16 -7.76 8.70 22.65 0.20 -7.56 16 11 C 0.05 2.72 5.53 -21.17 -0.12 2.61 16 12 C -0.47 -23.05 9.05 23.41 0.21 -22.84 16 13 H 0.09 4.30 7.89 -2.91 -0.02 4.28 16 14 C 0.04 1.64 5.18 85.30 0.44 2.09 16 15 N -0.81 -39.35 11.17 21.85 0.24 -39.10 16 16 Si 0.99 34.80 29.59 68.60 2.03 36.83 16 17 H -0.26 -8.91 7.11 99.48 0.71 -8.20 16 18 H -0.27 -8.96 7.11 99.48 0.71 -8.25 16 19 H -0.25 -8.77 7.11 99.48 0.71 -8.07 16 20 C -0.03 -1.36 10.97 85.45 0.94 -0.42 16 21 N -0.44 -20.79 8.87 -182.69 -1.62 -22.41 16 22 C -0.13 -4.45 6.36 22.69 0.14 -4.31 16 23 Cl -0.05 -1.78 27.12 -2.72 -0.07 -1.85 16 24 C 0.16 4.60 10.97 84.60 0.93 5.53 16 25 N -0.54 -16.02 9.19 -309.11 -2.84 -18.86 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.07 1.39 8.10 -2.39 -0.02 1.38 16 32 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 33 H 0.15 4.91 8.02 -2.91 -0.02 4.89 16 34 H 0.12 4.85 7.98 -2.92 -0.02 4.82 16 35 H 0.11 5.76 6.54 -2.91 -0.02 5.74 16 36 H 0.30 12.86 8.29 -92.71 -0.77 12.09 16 37 H 0.14 6.37 8.06 -2.91 -0.02 6.35 16 38 H 0.20 4.22 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -57.07 345.39 3.14 -53.93 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 1.08 Total: 24.82 kcal Atomic # 6 Polarization: -28.90 SS G_CDS: 5.23 Total: -23.67 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -4.22 Total: -80.37 kcal Atomic # 8 Polarization: -8.77 SS G_CDS: -0.91 Total: -9.69 kcal Atomic # 14 Polarization: 34.80 SS G_CDS: 2.03 Total: 36.83 kcal Atomic # 17 Polarization: -1.78 SS G_CDS: -0.07 Total: -1.85 kcal Total: -57.07 3.14 -53.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244604991.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.988 kcal (2) G-P(sol) polarization free energy of solvation -57.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.930 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds