Wall clock time and date at job start Tue Mar 31 2020 11:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47309 * 2 1 4 4 O 1.42906 * 109.47296 * 179.97438 * 3 2 1 5 5 C 1.35710 * 116.99957 * 179.97438 * 4 3 2 6 6 C 1.38670 * 119.59508 * 180.25745 * 5 4 3 7 7 C 1.39797 * 118.94484 * 180.25070 * 6 5 4 8 8 C 1.47890 * 120.90341 * 179.77767 * 7 6 5 9 9 N 1.32552 * 119.98521 * 128.43336 * 8 7 6 10 10 C 1.31739 * 121.72826 * 180.24403 * 9 8 7 11 11 C 1.38871 * 121.49962 * 359.76251 * 10 9 8 12 12 C 1.36888 * 119.79423 * 359.97438 * 11 10 9 13 13 C 1.41136 * 118.38403 * 0.02562 * 12 11 10 14 14 C 1.40901 * 120.71375 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99983 * 154.45464 * 14 13 12 16 16 C 1.40111 * 119.99872 * 334.16777 * 14 13 12 17 17 N 1.30742 * 120.00279 * 344.11481 * 16 14 13 18 18 Si 1.86798 * 119.99749 * 164.11555 * 16 14 13 19 19 H 1.48503 * 109.47556 * 90.00181 * 18 16 14 20 20 H 1.48500 * 109.47121 * 209.99884 * 18 16 14 21 21 H 1.48498 * 109.47550 * 329.99937 * 18 16 14 22 22 C 1.40271 * 118.18474 * 359.50408 * 7 6 5 23 23 Cl 1.73597 * 120.45734 * 180.22927 * 22 7 6 24 24 C 1.37949 * 119.08385 * 0.25078 * 22 7 6 25 25 N 1.32001 * 120.96315 * 0.02562 * 24 22 7 26 26 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47040 * 300.00214 * 1 2 3 28 28 H 1.09003 * 109.46930 * 59.99896 * 1 2 3 29 29 H 1.09008 * 109.47147 * 240.00319 * 2 1 3 30 30 H 1.09003 * 109.46930 * 120.00104 * 2 1 3 31 31 H 1.09004 * 109.47188 * 60.00324 * 3 2 1 32 32 H 1.09003 * 109.47210 * 299.99933 * 3 2 1 33 33 H 1.07996 * 120.52376 * 0.02562 * 6 5 4 34 34 H 1.07999 * 119.24500 * 179.74028 * 10 9 8 35 35 H 1.08003 * 120.10768 * 179.97438 * 11 10 9 36 36 H 1.07993 * 120.80754 * 180.02562 * 12 11 10 37 37 H 0.96995 * 120.00484 * 179.97438 * 17 16 14 38 38 H 1.07998 * 119.51893 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0852 2.6516 0.0001 6 6 5.4704 2.7144 -0.0047 7 6 6.0909 3.9671 0.0002 8 6 7.5652 4.0845 0.0002 9 7 8.1686 4.8522 -0.8962 10 6 9.4796 4.9780 -0.9304 11 6 10.2960 4.3147 -0.0238 12 6 9.7375 3.5096 0.9321 13 6 8.3325 3.3797 0.9625 14 6 7.7059 2.5635 1.9250 15 1 6.6879 2.7653 2.2240 16 6 8.4015 1.4863 2.4899 17 7 9.4930 1.0433 1.9226 18 14 7.7693 0.6831 4.0534 19 1 6.8417 -0.4221 3.7021 20 1 8.9137 0.1411 4.8290 21 1 7.0499 1.6917 4.8721 22 6 5.2771 5.1096 -0.0008 23 17 5.9854 6.6945 -0.0008 24 6 3.9062 4.9563 -0.0013 25 7 3.3570 3.7559 -0.0003 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 6.0605 1.8099 -0.0086 34 1 9.9294 5.6111 -1.6809 35 1 11.3684 4.4337 -0.0726 36 1 10.3569 2.9865 1.6455 37 1 9.9747 0.2979 2.3138 38 1 3.2729 5.8312 -0.0024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244605513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:03 Heat of formation + Delta-G solvation = 1.837866 kcal Electronic energy + Delta-G solvation = -23675.420127 eV Core-core repulsion = 20122.197167 eV Total energy + Delta-G solvation = -3553.222960 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.19735 -38.57020 -37.56282 -35.77550 -34.29940 -33.89229 -32.78442 -30.75481 -29.76542 -29.30462 -26.48563 -25.88108 -23.55203 -22.85359 -21.57881 -21.47460 -20.57928 -17.88088 -17.50170 -16.61647 -16.23296 -15.89812 -15.69871 -14.89953 -14.62031 -14.41515 -14.15319 -14.02067 -13.68173 -13.06449 -12.71915 -12.68328 -12.36983 -12.19903 -11.91237 -11.86363 -11.72196 -11.55990 -11.47557 -11.14942 -11.05772 -11.02226 -10.71431 -10.49755 -10.36656 -10.07293 -9.54155 -9.27399 -9.17127 -8.28801 -8.15430 -7.91445 -7.63702 -7.04733 -4.67205 1.51957 1.56188 2.53040 2.75821 2.84378 2.93343 2.98013 3.10547 3.33619 3.72768 4.16880 4.43263 4.62410 4.88815 4.89467 5.13623 5.16122 5.39113 5.44459 5.52736 5.55654 5.60773 5.66749 5.84974 6.02617 6.02777 6.09935 6.17681 6.22543 6.36152 6.50956 6.63166 6.78047 6.86909 6.96151 7.05365 7.57859 7.60040 7.67356 7.77433 8.18249 8.23054 8.45281 8.52734 9.46483 9.83665 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.005701 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.242024 B = 4910.617451 C = 7061.255033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.072 3.928 4 O -0.305 6.305 5 C 0.312 3.688 6 C -0.155 4.155 7 C 0.115 3.885 8 C -0.009 4.009 9 N -0.430 5.430 10 C -0.030 4.030 11 C -0.142 4.142 12 C -0.129 4.129 13 C 0.095 3.905 14 C -0.435 4.435 15 H 0.086 0.914 16 C 0.078 3.922 17 N -0.777 5.777 18 Si 0.908 3.092 19 H -0.264 1.264 20 H -0.272 1.272 21 H -0.257 1.257 22 C -0.116 4.116 23 Cl -0.054 7.054 24 C 0.137 3.863 25 N -0.545 5.545 26 H 0.061 0.939 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.153 0.847 34 H 0.123 0.877 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.288 0.712 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.485 -0.346 -0.482 9.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.164 4.164 3 C -0.004 4.004 4 O -0.213 6.213 5 C 0.135 3.865 6 C -0.177 4.177 7 C 0.106 3.894 8 C -0.146 4.146 9 N -0.137 5.137 10 C -0.193 4.193 11 C -0.163 4.163 12 C -0.155 4.155 13 C 0.090 3.910 14 C -0.463 4.463 15 H 0.104 0.896 16 C -0.143 4.143 17 N -0.400 5.400 18 Si 0.732 3.268 19 H -0.188 1.188 20 H -0.197 1.197 21 H -0.181 1.181 22 C -0.146 4.146 23 Cl -0.025 7.025 24 C -0.019 4.019 25 N -0.270 5.270 26 H 0.080 0.920 27 H 0.076 0.924 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.170 0.830 34 H 0.140 0.860 35 H 0.118 0.882 36 H 0.145 0.855 37 H 0.099 0.901 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.555 -0.329 -1.061 10.613 hybrid contribution 1.256 -0.556 1.307 1.896 sum -9.299 -0.885 0.246 9.344 Atomic orbital electron populations 1.21662 0.94485 1.02098 1.02182 1.21529 0.95885 0.95482 1.03537 1.22604 0.78141 0.97404 1.02252 1.86236 1.22076 1.24776 1.88224 1.19619 0.89139 0.84201 0.93528 1.21232 0.90958 0.99354 1.06144 1.18440 0.92555 0.89629 0.88786 1.18968 0.89735 1.07000 0.98864 1.66974 1.11659 1.13623 1.21463 1.21645 0.88854 1.06052 1.02720 1.21471 0.98991 0.98449 0.97359 1.21396 0.95120 0.99299 0.99667 1.18229 0.92149 0.90078 0.90546 1.19621 1.00449 1.08688 1.17583 0.89609 1.26014 0.93980 0.96457 0.97887 1.69733 1.14097 1.20454 1.35752 0.86268 0.79646 0.79992 0.80938 1.18826 1.19720 1.18082 1.21983 0.93525 0.87749 1.11363 1.98325 1.84481 1.22686 1.97026 1.22010 0.90526 0.93925 0.95419 1.67238 1.40127 0.98196 1.21402 0.92032 0.92415 0.92441 0.91015 0.90962 0.91865 0.91902 0.82970 0.85976 0.88158 0.85463 0.90122 0.82429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.24 9.91 37.16 0.37 -0.87 16 2 C -0.13 -1.38 6.30 -26.73 -0.17 -1.55 16 3 C 0.07 0.98 5.31 37.16 0.20 1.17 16 4 O -0.31 -5.35 10.11 -18.84 -0.19 -5.54 16 5 C 0.31 5.98 7.48 -17.20 -0.13 5.85 16 6 C -0.16 -3.26 8.09 -38.84 -0.31 -3.58 16 7 C 0.11 2.52 5.02 -104.60 -0.52 2.00 16 8 C -0.01 -0.21 5.89 -82.23 -0.48 -0.69 16 9 N -0.43 -10.20 9.19 -9.17 -0.08 -10.29 16 10 C -0.03 -0.66 11.16 -17.36 -0.19 -0.86 16 11 C -0.14 -3.12 10.03 -39.84 -0.40 -3.52 16 12 C -0.13 -3.11 8.74 -38.97 -0.34 -3.45 16 13 C 0.09 2.37 5.57 -106.42 -0.59 1.77 16 14 C -0.44 -10.58 7.33 -37.87 -0.28 -10.86 16 15 H 0.09 2.08 6.68 -52.48 -0.35 1.73 16 16 C 0.08 1.78 5.19 -17.31 -0.09 1.69 16 17 N -0.78 -18.22 10.97 55.56 0.61 -17.61 16 18 Si 0.91 17.49 29.59 -169.99 -5.03 12.46 16 19 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.08 7.11 56.52 0.40 -4.68 16 21 H -0.26 -5.00 7.11 56.52 0.40 -4.60 16 22 C -0.12 -2.28 6.37 -38.92 -0.25 -2.53 16 23 Cl -0.05 -1.01 27.33 -51.86 -1.42 -2.43 16 24 C 0.14 2.37 10.97 -17.58 -0.19 2.18 16 25 N -0.54 -9.80 9.19 -13.39 -0.12 -9.93 16 26 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.06 0.86 8.10 -51.93 -0.42 0.44 16 32 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 33 H 0.15 3.33 7.52 -52.49 -0.39 2.94 16 34 H 0.12 2.36 8.06 -52.49 -0.42 1.93 16 35 H 0.10 1.89 8.06 -52.48 -0.42 1.47 16 36 H 0.13 3.09 6.30 -52.49 -0.33 2.76 16 37 H 0.29 6.11 8.29 -40.82 -0.34 5.77 16 38 H 0.16 2.19 8.06 -52.49 -0.42 1.77 16 LS Contribution 340.93 15.07 5.14 5.14 Total: -1.00 -26.39 340.93 -8.92 -35.31 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -4.43 Total: 6.12 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: -3.39 Total: -13.24 kcal Atomic # 7 Polarization: -38.22 SS G_CDS: 0.40 Total: -37.82 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.19 Total: -5.54 kcal Atomic # 14 Polarization: 17.49 SS G_CDS: -5.03 Total: 12.46 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.42 Total: -2.43 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -26.39 -8.92 -35.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244605513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.150 kcal (2) G-P(sol) polarization free energy of solvation -26.391 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.921 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds