Wall clock time and date at job start Tue Mar 31 2020 11:55:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47309 * 2 1 4 4 O 1.42906 * 109.47296 * 179.97438 * 3 2 1 5 5 C 1.35710 * 116.99957 * 179.97438 * 4 3 2 6 6 C 1.38670 * 119.59508 * 180.25745 * 5 4 3 7 7 C 1.39797 * 118.94484 * 180.25070 * 6 5 4 8 8 C 1.47890 * 120.90341 * 179.77767 * 7 6 5 9 9 N 1.32552 * 119.98521 * 128.43336 * 8 7 6 10 10 C 1.31739 * 121.72826 * 180.24403 * 9 8 7 11 11 C 1.38871 * 121.49962 * 359.76251 * 10 9 8 12 12 C 1.36888 * 119.79423 * 359.97438 * 11 10 9 13 13 C 1.41136 * 118.38403 * 0.02562 * 12 11 10 14 14 C 1.40901 * 120.71375 * 179.97438 * 13 12 11 15 15 H 1.08003 * 119.99983 * 154.45464 * 14 13 12 16 16 C 1.40111 * 119.99872 * 334.16777 * 14 13 12 17 17 N 1.30742 * 120.00279 * 344.11481 * 16 14 13 18 18 Si 1.86798 * 119.99749 * 164.11555 * 16 14 13 19 19 H 1.48503 * 109.47556 * 90.00181 * 18 16 14 20 20 H 1.48500 * 109.47121 * 209.99884 * 18 16 14 21 21 H 1.48498 * 109.47550 * 329.99937 * 18 16 14 22 22 C 1.40271 * 118.18474 * 359.50408 * 7 6 5 23 23 Cl 1.73597 * 120.45734 * 180.22927 * 22 7 6 24 24 C 1.37949 * 119.08385 * 0.25078 * 22 7 6 25 25 N 1.32001 * 120.96315 * 0.02562 * 24 22 7 26 26 H 1.09000 * 109.47422 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47040 * 300.00214 * 1 2 3 28 28 H 1.09003 * 109.46930 * 59.99896 * 1 2 3 29 29 H 1.09008 * 109.47147 * 240.00319 * 2 1 3 30 30 H 1.09003 * 109.46930 * 120.00104 * 2 1 3 31 31 H 1.09004 * 109.47188 * 60.00324 * 3 2 1 32 32 H 1.09003 * 109.47210 * 299.99933 * 3 2 1 33 33 H 1.07996 * 120.52376 * 0.02562 * 6 5 4 34 34 H 1.07999 * 119.24500 * 179.74028 * 10 9 8 35 35 H 1.08003 * 120.10768 * 179.97438 * 11 10 9 36 36 H 1.07993 * 120.80754 * 180.02562 * 12 11 10 37 37 H 0.96995 * 120.00484 * 179.97438 * 17 16 14 38 38 H 1.07998 * 119.51893 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4691 1.4425 0.0006 5 6 4.0852 2.6516 0.0001 6 6 5.4704 2.7144 -0.0047 7 6 6.0909 3.9671 0.0002 8 6 7.5652 4.0845 0.0002 9 7 8.1686 4.8522 -0.8962 10 6 9.4796 4.9780 -0.9304 11 6 10.2960 4.3147 -0.0238 12 6 9.7375 3.5096 0.9321 13 6 8.3325 3.3797 0.9625 14 6 7.7059 2.5635 1.9250 15 1 6.6879 2.7653 2.2240 16 6 8.4015 1.4863 2.4899 17 7 9.4930 1.0433 1.9226 18 14 7.7693 0.6831 4.0534 19 1 6.8417 -0.4221 3.7021 20 1 8.9137 0.1411 4.8290 21 1 7.0499 1.6917 4.8721 22 6 5.2771 5.1096 -0.0008 23 17 5.9854 6.6945 -0.0008 24 6 3.9062 4.9563 -0.0013 25 7 3.3570 3.7559 -0.0003 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6767 1.9563 -0.8900 33 1 6.0605 1.8099 -0.0086 34 1 9.9294 5.6111 -1.6809 35 1 11.3684 4.4337 -0.0726 36 1 10.3569 2.9865 1.6455 37 1 9.9747 0.2979 2.3138 38 1 3.2729 5.8312 -0.0024 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244605513.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:03 Heat of formation + Delta-G solvation = -11.876015 kcal Electronic energy + Delta-G solvation = -23676.014805 eV Core-core repulsion = 20122.197167 eV Total energy + Delta-G solvation = -3553.817638 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.68345 -40.24646 -39.00186 -37.25726 -36.06198 -34.83739 -34.39182 -32.54129 -31.24540 -30.96364 -27.77733 -27.39594 -25.09233 -24.40002 -23.29361 -22.57852 -22.08330 -19.43372 -19.20905 -18.08863 -17.55872 -17.40468 -17.31871 -16.53229 -16.24327 -15.66454 -15.54366 -15.42890 -15.13003 -14.38724 -14.35454 -14.12666 -13.76751 -13.57198 -13.38331 -13.28194 -13.19897 -12.95997 -12.91016 -12.78112 -12.28477 -12.12644 -12.01311 -11.95872 -11.79270 -11.49270 -11.26316 -10.86349 -10.73241 -10.08436 -9.94125 -9.50310 -9.28882 -8.77868 -6.49371 -0.08973 0.05850 0.81819 1.09621 1.25653 1.34670 1.44323 1.50200 2.00709 2.12555 2.62497 2.69179 3.23314 3.59020 3.62055 3.93274 3.98735 3.99587 4.05264 4.37126 4.42463 4.52038 4.53581 4.59087 4.69394 4.73260 4.79777 4.84769 4.96963 5.04179 5.11733 5.16606 5.19218 5.26551 5.33007 5.39906 5.79045 5.87542 5.98131 6.21316 6.42383 6.65842 6.69722 6.73139 7.67035 8.13731 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009619 B = 0.005701 C = 0.003964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2910.242024 B = 4910.617451 C = 7061.255033 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C 0.065 3.935 4 O -0.317 6.317 5 C 0.317 3.683 6 C -0.171 4.171 7 C 0.093 3.907 8 C -0.020 4.020 9 N -0.443 5.443 10 C -0.036 4.036 11 C -0.139 4.139 12 C -0.152 4.152 13 C 0.069 3.931 14 C -0.456 4.456 15 H 0.076 0.924 16 C 0.046 3.954 17 N -0.803 5.803 18 Si 0.970 3.030 19 H -0.261 1.261 20 H -0.259 1.259 21 H -0.261 1.261 22 C -0.128 4.128 23 Cl -0.048 7.048 24 C 0.154 3.846 25 N -0.536 5.536 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.065 0.935 32 H 0.068 0.932 33 H 0.131 0.869 34 H 0.153 0.847 35 H 0.132 0.868 36 H 0.119 0.881 37 H 0.296 0.704 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.977 -0.172 -0.309 10.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.161 4.161 3 C -0.009 4.009 4 O -0.225 6.225 5 C 0.140 3.860 6 C -0.193 4.193 7 C 0.085 3.915 8 C -0.157 4.157 9 N -0.151 5.151 10 C -0.198 4.198 11 C -0.159 4.159 12 C -0.178 4.178 13 C 0.064 3.936 14 C -0.484 4.484 15 H 0.094 0.906 16 C -0.173 4.173 17 N -0.426 5.426 18 Si 0.790 3.210 19 H -0.185 1.185 20 H -0.183 1.183 21 H -0.185 1.185 22 C -0.158 4.158 23 Cl -0.019 7.019 24 C -0.002 4.002 25 N -0.261 5.261 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.084 0.916 32 H 0.086 0.914 33 H 0.149 0.851 34 H 0.170 0.830 35 H 0.150 0.850 36 H 0.137 0.863 37 H 0.107 0.893 38 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -12.045 -0.163 -0.901 12.079 hybrid contribution 1.683 -0.567 1.161 2.122 sum -10.362 -0.730 0.260 10.391 Atomic orbital electron populations 1.21650 0.92271 1.03276 1.02720 1.21567 0.97621 0.93482 1.03400 1.22940 0.75940 0.99491 1.02560 1.86241 1.24381 1.24084 1.87744 1.19591 0.88661 0.85112 0.92649 1.21053 0.91887 0.98453 1.07899 1.18519 0.92025 0.90857 0.90129 1.19277 0.90964 1.06788 0.98626 1.67042 1.12484 1.14006 1.21552 1.22219 0.88610 1.05910 1.03109 1.21772 1.00702 0.97185 0.96248 1.21458 0.95038 1.00553 1.00724 1.18548 0.92886 0.90869 0.91266 1.19662 1.00358 1.09741 1.18627 0.90553 1.26686 0.94031 0.96427 1.00168 1.69751 1.14936 1.21073 1.36885 0.85361 0.79398 0.78865 0.77368 1.18527 1.18252 1.18489 1.22098 0.94272 0.87422 1.12001 1.98318 1.84639 1.21927 1.97041 1.22618 0.90007 0.94817 0.92790 1.67397 1.39490 0.98099 1.21110 0.90561 0.91964 0.91829 0.91042 0.91279 0.91620 0.91395 0.85069 0.82977 0.85010 0.86315 0.89259 0.78433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.91 71.98 0.71 -1.35 16 2 C -0.12 -2.49 6.30 30.59 0.19 -2.30 16 3 C 0.07 1.70 5.31 71.98 0.38 2.08 16 4 O -0.32 -11.02 10.11 -90.31 -0.91 -11.94 16 5 C 0.32 12.11 7.48 84.73 0.63 12.74 16 6 C -0.17 -7.41 8.09 22.75 0.18 -7.23 16 7 C 0.09 4.19 5.02 -19.85 -0.10 4.09 16 8 C -0.02 -0.97 5.89 42.48 0.25 -0.72 16 9 N -0.44 -21.09 9.19 -182.91 -1.68 -22.77 16 10 C -0.04 -1.57 11.16 84.86 0.95 -0.63 16 11 C -0.14 -6.04 10.03 22.10 0.22 -5.82 16 12 C -0.15 -7.47 8.74 22.66 0.20 -7.27 16 13 C 0.07 3.56 5.57 -21.03 -0.12 3.44 16 14 C -0.46 -22.98 7.33 23.38 0.17 -22.81 16 15 H 0.08 3.87 6.68 -2.91 -0.02 3.85 16 16 C 0.05 2.13 5.19 85.31 0.44 2.58 16 17 N -0.80 -38.41 10.97 21.85 0.24 -38.17 16 18 Si 0.97 36.11 29.59 68.60 2.03 38.14 16 19 H -0.26 -9.52 7.11 99.48 0.71 -8.81 16 20 H -0.26 -8.97 7.11 99.48 0.71 -8.27 16 21 H -0.26 -9.79 7.11 99.48 0.71 -9.08 16 22 C -0.13 -4.95 6.37 22.70 0.14 -4.81 16 23 Cl -0.05 -1.75 27.33 -2.72 -0.07 -1.83 16 24 C 0.15 5.02 10.97 84.60 0.93 5.95 16 25 N -0.54 -18.48 9.19 -309.13 -2.84 -21.32 16 26 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 30 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.07 1.68 8.10 -2.38 -0.02 1.66 16 32 H 0.07 1.70 8.10 -2.39 -0.02 1.68 16 33 H 0.13 6.13 7.52 -2.91 -0.02 6.11 16 34 H 0.15 5.56 8.06 -2.91 -0.02 5.54 16 35 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 36 H 0.12 5.95 6.30 -2.91 -0.02 5.93 16 37 H 0.30 12.71 8.29 -92.71 -0.77 11.94 16 38 H 0.20 4.80 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -57.53 340.93 3.04 -54.49 By element: Atomic # 1 Polarization: 24.37 SS G_CDS: 1.09 Total: 25.45 kcal Atomic # 6 Polarization: -27.25 SS G_CDS: 5.19 Total: -22.06 kcal Atomic # 7 Polarization: -77.99 SS G_CDS: -4.28 Total: -82.27 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.91 Total: -11.94 kcal Atomic # 14 Polarization: 36.11 SS G_CDS: 2.03 Total: 38.14 kcal Atomic # 17 Polarization: -1.75 SS G_CDS: -0.07 Total: -1.83 kcal Total: -57.53 3.04 -54.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244605513.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.616 kcal (2) G-P(sol) polarization free energy of solvation -57.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds