Wall clock time and date at job start Tue Mar 31 2020 11:55:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47205 * 2 1 4 4 O 1.42899 * 109.47250 * 180.02562 * 3 2 1 5 5 C 1.35709 * 117.00134 * 180.02562 * 4 3 2 6 6 C 1.38732 * 119.61442 * 179.97438 * 5 4 3 7 7 C 1.39520 * 118.98056 * 179.97438 * 6 5 4 8 8 C 1.48359 * 120.87990 * 179.97438 * 7 6 5 9 9 C 1.39861 * 119.60461 * 47.91314 * 8 7 6 10 10 C 1.38723 * 119.46349 * 179.97438 * 9 8 7 11 11 C 1.38265 * 118.68571 * 359.97438 * 10 9 8 12 12 C 1.40695 * 119.18102 * 0.02562 * 11 10 9 13 13 C 1.41390 * 119.76964 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00085 * 0.02562 * 13 12 11 15 15 C 1.40027 * 120.00156 * 179.97438 * 13 12 11 16 16 N 1.30738 * 120.00116 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99982 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46975 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47067 * 119.99943 * 17 15 13 20 20 H 1.48496 * 109.47190 * 240.00085 * 17 15 13 21 21 N 1.32209 * 119.60585 * 227.63749 * 8 7 6 22 22 C 1.40015 * 118.23657 * 359.75550 * 7 6 5 23 23 Cl 1.73601 * 120.44011 * 180.23779 * 22 7 6 24 24 C 1.37990 * 119.11353 * 0.51157 * 22 7 6 25 25 N 1.31983 * 120.94435 * 359.46930 * 24 22 7 26 26 H 1.08999 * 109.47249 * 59.99239 * 1 2 3 27 27 H 1.08999 * 109.47223 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46908 * 299.99531 * 1 2 3 29 29 H 1.08998 * 109.46908 * 240.00469 * 2 1 3 30 30 H 1.09000 * 109.47696 * 120.00469 * 2 1 3 31 31 H 1.08998 * 109.47248 * 60.00703 * 3 2 1 32 32 H 1.08999 * 109.47639 * 300.00523 * 3 2 1 33 33 H 1.08002 * 120.50734 * 359.97438 * 6 5 4 34 34 H 1.08006 * 120.26783 * 0.02562 * 9 8 7 35 35 H 1.07998 * 120.65551 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.40656 * 180.02562 * 11 10 9 37 37 H 0.97000 * 120.00048 * 180.02562 * 16 15 13 38 38 H 1.08007 * 119.52439 * 179.75780 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0851 2.6516 -0.0001 6 6 5.4710 2.7149 -0.0001 7 6 6.0906 3.9650 -0.0002 8 6 7.5696 4.0817 0.0003 9 6 8.3229 3.3233 -0.9016 10 6 9.7056 3.4351 -0.8989 11 6 10.2998 4.2997 0.0018 12 6 9.4877 5.0356 0.8841 13 6 10.0822 5.9229 1.8106 14 1 11.1561 6.0342 1.8390 15 6 9.2787 6.6581 2.6906 16 7 7.9787 6.5238 2.6560 17 14 10.0641 7.8309 3.9142 18 1 11.5400 7.7998 3.7523 19 1 9.5675 9.2086 3.6682 20 1 9.7094 7.4161 5.2952 21 7 8.1595 4.9054 0.8497 22 6 5.2796 5.1063 -0.0055 23 17 5.9903 6.6902 -0.0121 24 6 3.9080 4.9553 0.0003 25 7 3.3573 3.7559 0.0002 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 6.0611 1.8104 -0.0001 34 1 7.8320 2.6566 -1.5952 35 1 10.3060 2.8589 -1.5873 36 1 11.3739 4.4087 0.0276 37 1 7.4220 7.0334 3.2653 38 1 3.2761 5.8313 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244606708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:07 Heat of formation + Delta-G solvation = 15.004393 kcal Electronic energy + Delta-G solvation = -23303.127529 eV Core-core repulsion = 19750.475513 eV Total energy + Delta-G solvation = -3552.652016 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.35825 -38.46601 -37.63692 -35.63088 -34.02588 -33.85386 -32.64210 -30.61395 -29.89697 -29.34774 -26.64782 -25.69578 -23.87398 -22.90367 -21.65833 -21.30903 -20.61023 -18.09471 -17.27547 -16.79049 -16.37408 -15.93546 -15.26897 -14.65245 -14.58064 -14.55290 -14.35580 -14.06181 -13.67422 -13.16802 -12.82794 -12.66558 -12.33243 -12.30684 -12.07257 -11.82369 -11.71413 -11.25278 -11.18390 -11.09197 -11.02303 -10.79845 -10.55729 -10.43540 -10.30968 -10.02337 -9.56382 -9.35267 -9.27501 -8.23709 -7.98493 -7.67743 -7.55942 -6.43027 -4.55493 1.33030 1.40590 2.66781 2.82596 2.93330 3.08412 3.11566 3.14410 3.19703 3.92727 4.01257 4.48043 4.68410 4.77440 4.77737 4.98911 5.06932 5.30515 5.34111 5.34285 5.49223 5.51202 5.75589 5.77024 5.89815 5.91223 5.97297 6.02715 6.04058 6.36322 6.43486 6.50932 6.67635 6.83521 7.02386 7.21863 7.40797 7.46418 7.63162 7.91915 8.01205 8.15449 8.59914 8.84808 9.94470 10.26679 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.003637 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.781891 B = 7697.045216 C = 8321.637454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.071 3.929 4 O -0.307 6.307 5 C 0.314 3.686 6 C -0.169 4.169 7 C 0.080 3.920 8 C 0.164 3.836 9 C -0.293 4.293 10 C -0.059 4.059 11 C -0.266 4.266 12 C 0.253 3.747 13 C -0.426 4.426 14 H 0.084 0.916 15 C 0.069 3.931 16 N -0.698 5.698 17 Si 0.902 3.098 18 H -0.261 1.261 19 H -0.274 1.274 20 H -0.274 1.274 21 N -0.444 5.444 22 C -0.092 4.092 23 Cl -0.021 7.021 24 C 0.136 3.864 25 N -0.537 5.537 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.146 0.854 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.100 0.900 37 H 0.272 0.728 38 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.682 -5.496 -3.661 12.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.004 4.004 4 O -0.215 6.215 5 C 0.135 3.865 6 C -0.191 4.191 7 C 0.071 3.929 8 C 0.018 3.982 9 C -0.317 4.317 10 C -0.083 4.083 11 C -0.289 4.289 12 C 0.128 3.872 13 C -0.457 4.457 14 H 0.102 0.898 15 C -0.158 4.158 16 N -0.318 5.318 17 Si 0.727 3.273 18 H -0.185 1.185 19 H -0.199 1.199 20 H -0.199 1.199 21 N -0.156 5.156 22 C -0.123 4.123 23 Cl 0.008 6.992 24 C -0.020 4.020 25 N -0.262 5.262 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.164 0.836 34 H 0.114 0.886 35 H 0.117 0.883 36 H 0.118 0.882 37 H 0.083 0.917 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -12.081 -5.103 -2.946 13.441 hybrid contribution 1.623 0.338 -0.030 1.658 sum -10.459 -4.765 -2.976 11.872 Atomic orbital electron populations 1.21666 0.94377 1.02188 1.02280 1.21525 0.96008 0.95334 1.03473 1.22636 0.77824 0.97542 1.02439 1.86202 1.22371 1.24691 1.88260 1.19545 0.88977 0.84391 0.93575 1.21035 0.91437 0.98580 1.08016 1.18860 0.93419 0.90216 0.90426 1.19324 0.89671 0.94715 0.94465 1.21079 0.94257 1.09172 1.07157 1.20757 0.93980 0.96717 0.96868 1.21823 0.99095 1.05051 1.02949 1.18511 0.87125 0.90772 0.90761 1.19616 0.94478 1.18369 1.13208 0.89777 1.26033 0.94791 0.97183 0.97786 1.70143 1.04154 1.29536 1.27993 0.86347 0.80582 0.80121 0.80277 1.18504 1.19896 1.19882 1.68855 1.10781 1.15892 1.20118 1.21940 0.93371 0.89343 1.07599 1.98402 1.83677 1.20659 1.96424 1.22155 0.90760 0.93924 0.95151 1.67261 1.40178 0.98284 1.20436 0.92381 0.91960 0.92358 0.91023 0.90985 0.91734 0.91780 0.83644 0.88561 0.88287 0.88163 0.91655 0.82041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.91 37.16 0.37 -0.71 16 2 C -0.13 -1.17 6.30 -26.73 -0.17 -1.34 16 3 C 0.07 0.86 5.31 37.16 0.20 1.06 16 4 O -0.31 -4.75 10.11 -18.83 -0.19 -4.94 16 5 C 0.31 5.43 7.48 -17.19 -0.13 5.30 16 6 C -0.17 -3.14 9.50 -38.92 -0.37 -3.51 16 7 C 0.08 1.67 5.63 -104.59 -0.59 1.08 16 8 C 0.16 3.86 5.94 -82.93 -0.49 3.37 16 9 C -0.29 -6.43 9.56 -38.80 -0.37 -6.81 16 10 C -0.06 -1.29 10.15 -39.39 -0.40 -1.69 16 11 C -0.27 -6.31 9.83 -38.64 -0.38 -6.69 16 12 C 0.25 6.65 6.55 -85.01 -0.56 6.10 16 13 C -0.43 -10.95 9.14 -37.71 -0.34 -11.29 16 14 H 0.08 2.04 7.85 -52.49 -0.41 1.63 16 15 C 0.07 1.68 5.50 -17.35 -0.10 1.58 16 16 N -0.70 -17.61 11.46 55.55 0.64 -16.98 16 17 Si 0.90 18.20 29.56 -169.99 -5.02 13.17 16 18 H -0.26 -5.20 7.11 56.52 0.40 -4.80 16 19 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 20 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 21 N -0.44 -11.57 6.44 -7.67 -0.05 -11.62 16 22 C -0.09 -1.81 6.35 -39.01 -0.25 -2.06 16 23 Cl -0.02 -0.43 27.15 -51.86 -1.41 -1.83 16 24 C 0.14 2.29 10.97 -17.58 -0.19 2.09 16 25 N -0.54 -9.10 9.19 -13.37 -0.12 -9.22 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.06 0.77 8.10 -51.93 -0.42 0.34 16 33 H 0.15 2.53 8.04 -52.49 -0.42 2.10 16 34 H 0.10 1.89 8.01 -52.48 -0.42 1.47 16 35 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 36 H 0.10 2.19 8.06 -52.49 -0.42 1.77 16 37 H 0.27 6.35 8.29 -40.82 -0.34 6.02 16 38 H 0.16 2.23 8.06 -52.48 -0.42 1.81 16 LS Contribution 346.64 15.07 5.22 5.22 Total: -1.00 -28.02 346.64 -9.32 -37.34 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -4.61 Total: 2.36 kcal Atomic # 6 Polarization: -9.74 SS G_CDS: -3.77 Total: -13.51 kcal Atomic # 7 Polarization: -38.28 SS G_CDS: 0.46 Total: -37.82 kcal Atomic # 8 Polarization: -4.75 SS G_CDS: -0.19 Total: -4.94 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.02 Total: 13.17 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.41 Total: -1.83 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -28.02 -9.32 -37.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244606708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.341 kcal (2) G-P(sol) polarization free energy of solvation -28.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds