Wall clock time and date at job start Tue Mar 31 2020 11:55:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47205 * 2 1 4 4 O 1.42899 * 109.47250 * 180.02562 * 3 2 1 5 5 C 1.35709 * 117.00134 * 180.02562 * 4 3 2 6 6 C 1.38732 * 119.61442 * 179.97438 * 5 4 3 7 7 C 1.39520 * 118.98056 * 179.97438 * 6 5 4 8 8 C 1.48359 * 120.87990 * 179.97438 * 7 6 5 9 9 C 1.39861 * 119.60461 * 47.91314 * 8 7 6 10 10 C 1.38723 * 119.46349 * 179.97438 * 9 8 7 11 11 C 1.38265 * 118.68571 * 359.97438 * 10 9 8 12 12 C 1.40695 * 119.18102 * 0.02562 * 11 10 9 13 13 C 1.41390 * 119.76964 * 179.97438 * 12 11 10 14 14 H 1.07999 * 120.00085 * 0.02562 * 13 12 11 15 15 C 1.40027 * 120.00156 * 179.97438 * 13 12 11 16 16 N 1.30738 * 120.00116 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99982 * 180.02562 * 15 13 12 18 18 H 1.48504 * 109.46975 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47067 * 119.99943 * 17 15 13 20 20 H 1.48496 * 109.47190 * 240.00085 * 17 15 13 21 21 N 1.32209 * 119.60585 * 227.63749 * 8 7 6 22 22 C 1.40015 * 118.23657 * 359.75550 * 7 6 5 23 23 Cl 1.73601 * 120.44011 * 180.23779 * 22 7 6 24 24 C 1.37990 * 119.11353 * 0.51157 * 22 7 6 25 25 N 1.31983 * 120.94435 * 359.46930 * 24 22 7 26 26 H 1.08999 * 109.47249 * 59.99239 * 1 2 3 27 27 H 1.08999 * 109.47223 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46908 * 299.99531 * 1 2 3 29 29 H 1.08998 * 109.46908 * 240.00469 * 2 1 3 30 30 H 1.09000 * 109.47696 * 120.00469 * 2 1 3 31 31 H 1.08998 * 109.47248 * 60.00703 * 3 2 1 32 32 H 1.08999 * 109.47639 * 300.00523 * 3 2 1 33 33 H 1.08002 * 120.50734 * 359.97438 * 6 5 4 34 34 H 1.08006 * 120.26783 * 0.02562 * 9 8 7 35 35 H 1.07998 * 120.65551 * 180.02562 * 10 9 8 36 36 H 1.08000 * 120.40656 * 180.02562 * 11 10 9 37 37 H 0.97000 * 120.00048 * 180.02562 * 16 15 13 38 38 H 1.08007 * 119.52439 * 179.75780 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0851 2.6516 -0.0001 6 6 5.4710 2.7149 -0.0001 7 6 6.0906 3.9650 -0.0002 8 6 7.5696 4.0817 0.0003 9 6 8.3229 3.3233 -0.9016 10 6 9.7056 3.4351 -0.8989 11 6 10.2998 4.2997 0.0018 12 6 9.4877 5.0356 0.8841 13 6 10.0822 5.9229 1.8106 14 1 11.1561 6.0342 1.8390 15 6 9.2787 6.6581 2.6906 16 7 7.9787 6.5238 2.6560 17 14 10.0641 7.8309 3.9142 18 1 11.5400 7.7998 3.7523 19 1 9.5675 9.2086 3.6682 20 1 9.7094 7.4161 5.2952 21 7 8.1595 4.9054 0.8497 22 6 5.2796 5.1063 -0.0055 23 17 5.9903 6.6902 -0.0121 24 6 3.9080 4.9553 0.0003 25 7 3.3573 3.7559 0.0002 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 6.0611 1.8104 -0.0001 34 1 7.8320 2.6566 -1.5952 35 1 10.3060 2.8589 -1.5873 36 1 11.3739 4.4087 0.0276 37 1 7.4220 7.0334 3.2653 38 1 3.2761 5.8313 0.0002 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244606708.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:06 Heat of formation + Delta-G solvation = 0.382043 kcal Electronic energy + Delta-G solvation = -23303.761602 eV Core-core repulsion = 19750.475513 eV Total energy + Delta-G solvation = -3553.286089 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.73654 -40.09340 -39.03834 -37.13881 -35.63728 -34.83645 -34.23876 -32.37446 -31.36129 -30.97668 -27.80865 -27.28360 -25.33329 -24.38255 -23.07888 -22.60203 -22.06313 -19.60741 -18.95857 -18.17839 -17.45652 -17.41248 -16.94903 -16.36216 -16.05579 -15.86608 -15.62137 -15.43049 -15.12097 -14.40849 -14.34396 -14.07570 -13.81966 -13.55577 -13.31171 -12.98041 -12.90265 -12.82331 -12.77952 -12.61180 -12.26939 -12.08941 -11.98404 -11.84442 -11.73702 -11.49100 -11.26683 -10.89578 -10.79561 -10.02164 -9.49346 -9.48575 -9.26470 -8.22605 -6.44901 -0.18895 -0.01628 0.93241 1.19302 1.35577 1.42859 1.52199 1.55502 1.94171 2.24868 2.56512 2.89369 3.16824 3.49615 3.74924 3.89806 3.97955 3.99343 4.03970 4.34517 4.37727 4.43734 4.55587 4.59028 4.63054 4.72760 4.83239 4.84712 4.91922 4.98053 5.12504 5.19961 5.20128 5.23719 5.38159 5.44777 5.67135 5.85134 6.14167 6.14830 6.27766 6.62291 6.76331 6.98036 8.12392 8.48070 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.017389 B = 0.003637 C = 0.003364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.781891 B = 7697.045216 C = 8321.637454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.065 3.935 4 O -0.311 6.311 5 C 0.319 3.681 6 C -0.172 4.172 7 C 0.056 3.944 8 C 0.148 3.852 9 C -0.293 4.293 10 C -0.057 4.057 11 C -0.286 4.286 12 C 0.222 3.778 13 C -0.460 4.460 14 H 0.086 0.914 15 C 0.029 3.971 16 N -0.726 5.726 17 Si 0.975 3.025 18 H -0.257 1.257 19 H -0.270 1.270 20 H -0.270 1.270 21 N -0.468 5.468 22 C -0.109 4.109 23 Cl -0.037 7.037 24 C 0.151 3.849 25 N -0.531 5.531 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.153 0.847 34 H 0.121 0.879 35 H 0.136 0.864 36 H 0.111 0.889 37 H 0.275 0.725 38 H 0.194 0.806 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.956 -6.306 -3.932 14.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.159 4.159 3 C -0.010 4.010 4 O -0.218 6.218 5 C 0.140 3.860 6 C -0.194 4.194 7 C 0.047 3.953 8 C 0.003 3.997 9 C -0.316 4.316 10 C -0.080 4.080 11 C -0.309 4.309 12 C 0.096 3.904 13 C -0.491 4.491 14 H 0.104 0.896 15 C -0.195 4.195 16 N -0.347 5.347 17 Si 0.797 3.203 18 H -0.181 1.181 19 H -0.195 1.195 20 H -0.195 1.195 21 N -0.181 5.181 22 C -0.140 4.140 23 Cl -0.008 7.008 24 C -0.005 4.005 25 N -0.255 5.255 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.086 0.914 33 H 0.171 0.829 34 H 0.139 0.861 35 H 0.154 0.846 36 H 0.129 0.871 37 H 0.086 0.914 38 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges -13.368 -5.949 -3.236 14.985 hybrid contribution 1.893 0.433 -0.046 1.942 sum -11.475 -5.516 -3.282 13.148 Atomic orbital electron populations 1.21664 0.92620 1.03273 1.02611 1.21550 0.97355 0.93309 1.03636 1.22951 0.75890 0.99630 1.02528 1.86219 1.24329 1.23616 1.87674 1.19604 0.88784 0.85128 0.92434 1.21060 0.92222 0.97994 1.08132 1.18898 0.92433 0.91633 0.92317 1.19812 0.91259 0.94351 0.94243 1.21449 0.94615 1.08776 1.06781 1.21162 0.94318 0.96013 0.96549 1.22020 0.99648 1.05748 1.03489 1.18965 0.87950 0.91687 0.91768 1.19894 0.94872 1.19758 1.14566 0.89598 1.26783 0.95190 0.98396 0.99126 1.70243 1.05263 1.30391 1.28755 0.85256 0.79647 0.77758 0.77688 1.18099 1.19509 1.19482 1.68826 1.10844 1.17116 1.21295 1.22086 0.94322 0.88397 1.09159 1.98390 1.84116 1.21642 1.96620 1.22593 0.89978 0.94901 0.93060 1.67402 1.39755 0.98191 1.20194 0.91934 0.90523 0.92179 0.90694 0.91028 0.91862 0.91411 0.82911 0.86126 0.84616 0.87120 0.91419 0.78919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.12 -1.99 6.30 30.59 0.19 -1.80 16 3 C 0.06 1.44 5.31 71.98 0.38 1.83 16 4 O -0.31 -9.06 10.11 -90.30 -0.91 -9.98 16 5 C 0.32 10.60 7.48 84.75 0.63 11.23 16 6 C -0.17 -6.27 9.50 22.70 0.22 -6.06 16 7 C 0.06 2.34 5.63 -19.84 -0.11 2.23 16 8 C 0.15 7.05 5.94 42.18 0.25 7.30 16 9 C -0.29 -12.65 9.56 22.78 0.22 -12.43 16 10 C -0.06 -2.40 10.15 22.39 0.23 -2.17 16 11 C -0.29 -13.70 9.83 22.88 0.22 -13.47 16 12 C 0.22 11.95 6.55 40.26 0.26 12.22 16 13 C -0.46 -24.33 9.14 23.48 0.21 -24.11 16 14 H 0.09 4.30 7.85 -2.91 -0.02 4.27 16 15 C 0.03 1.43 5.50 85.29 0.47 1.90 16 16 N -0.73 -37.48 11.46 21.84 0.25 -37.23 16 17 Si 0.97 37.88 29.56 68.60 2.03 39.91 16 18 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 19 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 20 H -0.27 -10.21 7.11 99.48 0.71 -9.51 16 21 N -0.47 -24.96 6.44 -178.19 -1.15 -26.11 16 22 C -0.11 -4.27 6.35 22.64 0.14 -4.13 16 23 Cl -0.04 -1.52 27.15 -2.72 -0.07 -1.60 16 24 C 0.15 4.85 10.97 84.61 0.93 5.78 16 25 N -0.53 -17.02 9.19 -309.07 -2.84 -19.86 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 29 H 0.07 1.19 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.06 1.44 8.10 -2.39 -0.02 1.42 16 32 H 0.07 1.47 8.10 -2.39 -0.02 1.45 16 33 H 0.15 5.19 8.04 -2.91 -0.02 5.16 16 34 H 0.12 4.53 8.01 -2.91 -0.02 4.50 16 35 H 0.14 4.65 8.06 -2.91 -0.02 4.62 16 36 H 0.11 4.88 8.06 -2.91 -0.02 4.86 16 37 H 0.28 13.12 8.29 -92.71 -0.77 12.35 16 38 H 0.19 4.89 8.06 -2.91 -0.02 4.86 16 Total: -1.00 -61.02 346.64 3.35 -57.67 By element: Atomic # 1 Polarization: 18.83 SS G_CDS: 1.08 Total: 19.91 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 4.97 Total: -22.72 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -3.74 Total: -83.20 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -0.91 Total: -9.98 kcal Atomic # 14 Polarization: 37.88 SS G_CDS: 2.03 Total: 39.91 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.07 Total: -1.60 kcal Total: -61.02 3.35 -57.67 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244606708.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.052 kcal (2) G-P(sol) polarization free energy of solvation -61.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.670 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds