Wall clock time and date at job start Tue Mar 31 2020 11:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47154 * 2 1 4 4 O 1.42906 * 109.47245 * 179.97438 * 3 2 1 5 5 C 1.35702 * 116.99999 * 180.02562 * 4 3 2 6 6 C 1.38732 * 119.60842 * 180.02562 * 5 4 3 7 7 C 1.39506 * 118.97859 * 179.97438 * 6 5 4 8 8 C 1.48389 * 120.87822 * 180.02562 * 7 6 5 9 9 C 1.38873 * 119.60817 * 312.05179 * 8 7 6 10 10 C 1.40880 * 118.76093 * 179.77747 * 9 8 7 11 11 C 1.41522 * 120.98610 * 180.25747 * 10 9 8 12 12 H 1.08006 * 119.99519 * 206.59527 * 11 10 9 13 13 C 1.40042 * 120.00276 * 26.59553 * 11 10 9 14 14 N 1.30734 * 120.00040 * 12.92514 * 13 11 10 15 15 Si 1.86797 * 120.00140 * 192.91953 * 13 11 10 16 16 H 1.48494 * 109.47118 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00154 * 15 13 11 18 18 H 1.48501 * 109.47473 * 240.00172 * 15 13 11 19 19 C 1.41125 * 118.01857 * 0.48063 * 10 9 8 20 20 C 1.37772 * 119.06783 * 359.75745 * 19 10 9 21 21 N 1.31886 * 121.15689 * 359.97438 * 20 19 10 22 22 C 1.39994 * 118.24480 * 0.02562 * 7 6 5 23 23 Cl 1.73592 * 120.44137 * 180.02562 * 22 7 6 24 24 C 1.37983 * 119.11910 * 359.97438 * 22 7 6 25 25 N 1.31988 * 120.93879 * 0.27328 * 24 22 7 26 26 H 1.09008 * 109.47209 * 59.99541 * 1 2 3 27 27 H 1.08996 * 109.47520 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47441 * 300.00087 * 1 2 3 29 29 H 1.09005 * 109.46625 * 240.00298 * 2 1 3 30 30 H 1.08994 * 109.47184 * 120.00411 * 2 1 3 31 31 H 1.09005 * 109.47111 * 60.00596 * 3 2 1 32 32 H 1.08994 * 109.47856 * 299.99975 * 3 2 1 33 33 H 1.07998 * 120.51019 * 0.02562 * 6 5 4 34 34 H 1.07997 * 120.62006 * 359.97438 * 9 8 7 35 35 H 0.96999 * 119.99983 * 179.97438 * 14 13 11 36 36 H 1.07997 * 120.46364 * 179.77519 * 19 10 9 37 37 H 1.08003 * 119.42311 * 180.02562 * 20 19 10 38 38 H 1.08002 * 119.52832 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0851 2.6516 0.0012 6 6 5.4710 2.7148 0.0013 7 6 6.0906 3.9647 0.0014 8 6 7.5699 4.0813 0.0009 9 6 8.3178 3.3288 0.8970 10 6 9.7212 3.4499 0.8778 11 6 10.5293 2.7013 1.7663 12 1 11.4999 3.0746 2.0581 13 6 10.0705 1.4767 2.2672 14 7 9.0252 0.9020 1.7322 15 14 10.9521 0.6642 3.6997 16 1 12.0965 1.5113 4.1213 17 1 10.0090 0.5059 4.8358 18 1 11.4513 -0.6703 3.2812 19 6 10.2970 4.3435 -0.0505 20 6 9.4728 5.0520 -0.8972 21 7 8.1626 4.9076 -0.8530 22 6 5.2799 5.1060 0.0020 23 17 5.9908 6.6897 0.0014 24 6 3.9083 4.9554 0.0019 25 7 3.3574 3.7560 0.0067 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 6.0611 1.8102 0.0004 34 1 7.8328 2.6608 1.5933 35 1 8.7076 0.0536 2.0790 36 1 11.3685 4.4699 -0.0967 37 1 9.9073 5.7371 -1.6101 38 1 3.2766 5.8314 0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244608413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:10 Heat of formation + Delta-G solvation = 1.352562 kcal Electronic energy + Delta-G solvation = -23183.526369 eV Core-core repulsion = 19630.282365 eV Total energy + Delta-G solvation = -3553.244004 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.42356 -38.59370 -37.72771 -35.94134 -34.25649 -33.99502 -32.91440 -30.72648 -29.96009 -28.98737 -26.58392 -26.02473 -23.91439 -22.90437 -21.80510 -21.46581 -20.61764 -18.31946 -17.31607 -16.53683 -16.37604 -16.09415 -15.56663 -14.67931 -14.59094 -14.52676 -14.33930 -14.20180 -13.79594 -13.24722 -12.85630 -12.70204 -12.48864 -12.42493 -12.24186 -11.99039 -11.84510 -11.47583 -11.27566 -11.17247 -11.15360 -11.00827 -10.65032 -10.50863 -10.30317 -10.11502 -9.59837 -9.46009 -9.41494 -8.15283 -8.12049 -8.01227 -7.61765 -6.91709 -4.69587 1.26364 1.31104 2.56928 2.61643 2.72043 2.98948 3.03806 3.11371 3.17953 3.79986 3.92950 4.40964 4.54765 4.77696 4.79826 4.89827 5.03911 5.25308 5.28775 5.34813 5.47486 5.50739 5.52437 5.77182 5.80192 5.93449 5.97203 5.99926 6.09857 6.28758 6.47787 6.66056 6.78610 6.81854 7.02775 7.17057 7.30082 7.38767 7.73626 7.94569 7.96525 8.31261 8.59819 8.64701 9.41973 10.00079 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.004529 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.613637 B = 6181.022343 C = 8514.893359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.127 4.127 3 C 0.071 3.929 4 O -0.303 6.303 5 C 0.320 3.680 6 C -0.162 4.162 7 C 0.081 3.919 8 C 0.123 3.877 9 C -0.170 4.170 10 C 0.125 3.875 11 C -0.453 4.453 12 H 0.083 0.917 13 C 0.076 3.924 14 N -0.789 5.789 15 Si 0.913 3.087 16 H -0.259 1.259 17 H -0.270 1.270 18 H -0.272 1.272 19 C -0.264 4.264 20 C 0.103 3.897 21 N -0.541 5.541 22 C -0.105 4.105 23 Cl -0.043 7.043 24 C 0.140 3.860 25 N -0.538 5.538 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.155 0.845 34 H 0.131 0.869 35 H 0.284 0.716 36 H 0.103 0.897 37 H 0.125 0.875 38 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.678 0.243 -0.903 11.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.005 4.005 4 O -0.211 6.211 5 C 0.141 3.859 6 C -0.184 4.184 7 C 0.072 3.928 8 C -0.008 4.008 9 C -0.193 4.193 10 C 0.117 3.883 11 C -0.485 4.485 12 H 0.102 0.898 13 C -0.143 4.143 14 N -0.415 5.415 15 Si 0.737 3.263 16 H -0.183 1.183 17 H -0.195 1.195 18 H -0.197 1.197 19 C -0.287 4.287 20 C -0.053 4.053 21 N -0.255 5.255 22 C -0.135 4.135 23 Cl -0.014 7.014 24 C -0.016 4.016 25 N -0.262 5.262 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.076 0.924 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.173 0.827 34 H 0.148 0.852 35 H 0.095 0.905 36 H 0.122 0.878 37 H 0.142 0.858 38 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -13.103 0.299 -1.469 13.188 hybrid contribution 1.738 -0.642 1.179 2.196 sum -11.364 -0.344 -0.290 11.373 Atomic orbital electron populations 1.21665 0.94374 1.02211 1.02215 1.21530 0.95972 0.95285 1.03629 1.22656 0.77758 0.97670 1.02385 1.86245 1.22402 1.24492 1.87948 1.19612 0.89042 0.84375 0.92837 1.21228 0.91500 0.99053 1.06575 1.18814 0.93206 0.90177 0.90568 1.18867 0.89304 0.96400 0.96228 1.22210 0.94359 1.01362 1.01382 1.17763 0.91638 0.89419 0.89529 1.19637 1.03318 1.02642 1.22867 0.89848 1.25964 0.94577 0.97094 0.96668 1.69711 1.20914 1.15331 1.35511 0.86167 0.80255 0.79229 0.80620 1.18271 1.19536 1.19742 1.21996 0.99031 1.06336 1.01303 1.21830 0.88992 0.97325 0.97117 1.67349 1.11940 1.21000 1.25232 1.21877 0.93522 0.88161 1.09956 1.98349 1.84172 1.22021 1.96856 1.22131 0.90518 0.94073 0.94900 1.67294 1.40111 0.98227 1.20610 0.92408 0.91935 0.92389 0.90937 0.90894 0.91729 0.91755 0.82719 0.85165 0.90456 0.87849 0.85792 0.81953 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.13 -1.25 6.30 -26.73 -0.17 -1.42 16 3 C 0.07 0.88 5.31 37.16 0.20 1.08 16 4 O -0.30 -4.89 10.11 -18.81 -0.19 -5.08 16 5 C 0.32 5.63 7.48 -17.18 -0.13 5.50 16 6 C -0.16 -3.15 9.49 -38.93 -0.37 -3.52 16 7 C 0.08 1.68 5.63 -104.59 -0.59 1.09 16 8 C 0.12 2.86 5.94 -83.04 -0.49 2.37 16 9 C -0.17 -4.24 8.19 -38.35 -0.31 -4.55 16 10 C 0.12 3.17 5.59 -106.55 -0.60 2.57 16 11 C -0.45 -11.35 9.12 -37.66 -0.34 -11.70 16 12 H 0.08 2.00 7.88 -52.48 -0.41 1.59 16 13 C 0.08 1.81 5.26 -17.34 -0.09 1.71 16 14 N -0.79 -19.18 10.88 55.55 0.60 -18.57 16 15 Si 0.91 17.74 29.58 -169.99 -5.03 12.71 16 16 H -0.26 -4.99 7.11 56.52 0.40 -4.59 16 17 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 18 H -0.27 -5.22 7.11 56.52 0.40 -4.81 16 19 C -0.26 -6.15 9.90 -38.66 -0.38 -6.53 16 20 C 0.10 2.29 11.15 -17.70 -0.20 2.09 16 21 N -0.54 -12.54 8.90 -9.94 -0.09 -12.63 16 22 C -0.11 -1.92 6.35 -39.02 -0.25 -2.17 16 23 Cl -0.04 -0.76 27.14 -51.86 -1.41 -2.16 16 24 C 0.14 2.21 10.97 -17.58 -0.19 2.02 16 25 N -0.54 -8.89 9.19 -13.38 -0.12 -9.02 16 26 H 0.06 0.42 8.14 -51.92 -0.42 -0.01 16 27 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 32 H 0.06 0.78 8.11 -51.93 -0.42 0.36 16 33 H 0.16 3.09 8.04 -52.49 -0.42 2.67 16 34 H 0.13 3.33 6.21 -52.49 -0.33 3.01 16 35 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 36 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 37 H 0.12 2.35 8.06 -52.48 -0.42 1.92 16 38 H 0.16 2.02 8.06 -52.49 -0.42 1.60 16 LS Contribution 345.24 15.07 5.20 5.20 Total: -1.00 -27.03 345.24 -9.10 -36.13 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -4.52 Total: 5.63 kcal Atomic # 6 Polarization: -8.67 SS G_CDS: -3.55 Total: -12.21 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.39 Total: -40.22 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.19 Total: -5.08 kcal Atomic # 14 Polarization: 17.74 SS G_CDS: -5.03 Total: 12.71 kcal Atomic # 17 Polarization: -0.76 SS G_CDS: -1.41 Total: -2.16 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.03 -9.10 -36.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244608413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.483 kcal (2) G-P(sol) polarization free energy of solvation -27.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.130 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds