Wall clock time and date at job start Tue Mar 31 2020 11:55:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47154 * 2 1 4 4 O 1.42906 * 109.47245 * 179.97438 * 3 2 1 5 5 C 1.35702 * 116.99999 * 180.02562 * 4 3 2 6 6 C 1.38732 * 119.60842 * 180.02562 * 5 4 3 7 7 C 1.39506 * 118.97859 * 179.97438 * 6 5 4 8 8 C 1.48389 * 120.87822 * 180.02562 * 7 6 5 9 9 C 1.38873 * 119.60817 * 312.05179 * 8 7 6 10 10 C 1.40880 * 118.76093 * 179.77747 * 9 8 7 11 11 C 1.41522 * 120.98610 * 180.25747 * 10 9 8 12 12 H 1.08006 * 119.99519 * 206.59527 * 11 10 9 13 13 C 1.40042 * 120.00276 * 26.59553 * 11 10 9 14 14 N 1.30734 * 120.00040 * 12.92514 * 13 11 10 15 15 Si 1.86797 * 120.00140 * 192.91953 * 13 11 10 16 16 H 1.48494 * 109.47118 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00154 * 15 13 11 18 18 H 1.48501 * 109.47473 * 240.00172 * 15 13 11 19 19 C 1.41125 * 118.01857 * 0.48063 * 10 9 8 20 20 C 1.37772 * 119.06783 * 359.75745 * 19 10 9 21 21 N 1.31886 * 121.15689 * 359.97438 * 20 19 10 22 22 C 1.39994 * 118.24480 * 0.02562 * 7 6 5 23 23 Cl 1.73592 * 120.44137 * 180.02562 * 22 7 6 24 24 C 1.37983 * 119.11910 * 359.97438 * 22 7 6 25 25 N 1.31988 * 120.93879 * 0.27328 * 24 22 7 26 26 H 1.09008 * 109.47209 * 59.99541 * 1 2 3 27 27 H 1.08996 * 109.47520 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47441 * 300.00087 * 1 2 3 29 29 H 1.09005 * 109.46625 * 240.00298 * 2 1 3 30 30 H 1.08994 * 109.47184 * 120.00411 * 2 1 3 31 31 H 1.09005 * 109.47111 * 60.00596 * 3 2 1 32 32 H 1.08994 * 109.47856 * 299.99975 * 3 2 1 33 33 H 1.07998 * 120.51019 * 0.02562 * 6 5 4 34 34 H 1.07997 * 120.62006 * 359.97438 * 9 8 7 35 35 H 0.96999 * 119.99983 * 179.97438 * 14 13 11 36 36 H 1.07997 * 120.46364 * 179.77519 * 19 10 9 37 37 H 1.08003 * 119.42311 * 180.02562 * 20 19 10 38 38 H 1.08002 * 119.52832 * 180.02562 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0851 2.6516 0.0012 6 6 5.4710 2.7148 0.0013 7 6 6.0906 3.9647 0.0014 8 6 7.5699 4.0813 0.0009 9 6 8.3178 3.3288 0.8970 10 6 9.7212 3.4499 0.8778 11 6 10.5293 2.7013 1.7663 12 1 11.4999 3.0746 2.0581 13 6 10.0705 1.4767 2.2672 14 7 9.0252 0.9020 1.7322 15 14 10.9521 0.6642 3.6997 16 1 12.0965 1.5113 4.1213 17 1 10.0090 0.5059 4.8358 18 1 11.4513 -0.6703 3.2812 19 6 10.2970 4.3435 -0.0505 20 6 9.4728 5.0520 -0.8972 21 7 8.1626 4.9076 -0.8530 22 6 5.2799 5.1060 0.0020 23 17 5.9908 6.6897 0.0014 24 6 3.9083 4.9554 0.0019 25 7 3.3574 3.7560 0.0067 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 1.8933 -0.5139 0.8899 31 1 1.6767 1.9563 0.8901 32 1 1.6767 1.9564 -0.8899 33 1 6.0611 1.8102 0.0004 34 1 7.8328 2.6608 1.5933 35 1 8.7076 0.0536 2.0790 36 1 11.3685 4.4699 -0.0967 37 1 9.9073 5.7371 -1.6101 38 1 3.2766 5.8314 0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244608413.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:10 Heat of formation + Delta-G solvation = -12.799877 kcal Electronic energy + Delta-G solvation = -23184.140064 eV Core-core repulsion = 19630.282365 eV Total energy + Delta-G solvation = -3553.857700 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.81025 -40.25422 -39.11532 -37.33394 -36.05417 -34.86626 -34.46732 -32.54497 -31.32417 -30.66423 -27.92455 -27.49604 -25.38245 -24.35845 -23.45771 -22.58102 -22.11554 -19.87688 -18.85203 -17.99937 -17.60677 -17.48778 -17.25954 -16.23458 -16.14196 -16.05741 -15.68704 -15.48383 -15.19067 -14.48558 -14.41210 -14.21354 -14.10295 -13.73451 -13.38151 -13.18306 -13.00757 -12.98558 -12.91998 -12.73337 -12.16776 -12.07739 -12.03545 -11.91997 -11.89199 -11.52614 -11.31116 -11.00710 -10.87674 -10.00114 -9.86662 -9.52437 -9.34425 -8.70178 -6.59326 -0.27534 -0.08060 0.87455 0.96007 1.16125 1.38319 1.51917 1.53246 1.90043 2.16821 2.49135 2.76077 3.10814 3.38145 3.56996 3.81061 3.83261 3.97076 3.99130 4.22406 4.35147 4.43410 4.54225 4.57504 4.61755 4.77496 4.79407 4.83699 4.95208 4.96219 5.11184 5.16160 5.18186 5.22567 5.34905 5.36432 5.46984 5.88150 6.11276 6.13649 6.44855 6.57091 6.74289 6.78218 7.60162 8.23694 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009960 B = 0.004529 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2810.613637 B = 6181.022343 C = 8514.893359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.123 4.123 3 C 0.065 3.935 4 O -0.314 6.314 5 C 0.325 3.675 6 C -0.176 4.176 7 C 0.058 3.942 8 C 0.126 3.874 9 C -0.194 4.194 10 C 0.097 3.903 11 C -0.484 4.484 12 H 0.085 0.915 13 C 0.038 3.962 14 N -0.817 5.817 15 Si 0.985 3.015 16 H -0.255 1.255 17 H -0.265 1.265 18 H -0.264 1.264 19 C -0.276 4.276 20 C 0.102 3.898 21 N -0.547 5.547 22 C -0.115 4.115 23 Cl -0.039 7.039 24 C 0.159 3.841 25 N -0.528 5.528 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.137 0.863 34 H 0.114 0.886 35 H 0.292 0.708 36 H 0.118 0.882 37 H 0.160 0.840 38 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.084 0.492 -0.746 13.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.161 4.161 3 C -0.010 4.010 4 O -0.222 6.222 5 C 0.147 3.853 6 C -0.198 4.198 7 C 0.049 3.951 8 C -0.006 4.006 9 C -0.217 4.217 10 C 0.089 3.911 11 C -0.515 4.515 12 H 0.103 0.897 13 C -0.179 4.179 14 N -0.442 5.442 15 Si 0.805 3.195 16 H -0.179 1.179 17 H -0.190 1.190 18 H -0.189 1.189 19 C -0.299 4.299 20 C -0.053 4.053 21 N -0.261 5.261 22 C -0.145 4.145 23 Cl -0.010 7.010 24 C 0.003 3.997 25 N -0.253 5.253 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.155 0.845 34 H 0.132 0.868 35 H 0.102 0.898 36 H 0.136 0.864 37 H 0.177 0.823 38 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -14.515 0.543 -1.328 14.586 hybrid contribution 2.070 -0.699 1.057 2.427 sum -12.445 -0.156 -0.271 12.449 Atomic orbital electron populations 1.21655 0.92301 1.03286 1.02746 1.21566 0.97592 0.93462 1.03465 1.22983 0.75639 0.99601 1.02766 1.86253 1.24612 1.23849 1.87450 1.19564 0.88507 0.85257 0.91986 1.21078 0.92493 0.98170 1.08077 1.18805 0.92153 0.91606 0.92546 1.19177 0.90813 0.95360 0.95222 1.22118 0.94549 1.02575 1.02441 1.18167 0.92215 0.90326 0.90418 1.19910 1.03759 1.03697 1.24137 0.89669 1.26810 0.95179 0.97169 0.98755 1.69776 1.21991 1.15873 1.36607 0.85099 0.79053 0.78248 0.77050 1.17856 1.19018 1.18910 1.22219 1.00032 1.06318 1.01322 1.22383 0.88727 0.97150 0.97081 1.67474 1.12420 1.21091 1.25101 1.21982 0.94286 0.87632 1.10559 1.98345 1.84359 1.21422 1.96875 1.22754 0.89888 0.94979 0.92103 1.67459 1.39469 0.98134 1.20228 0.91827 0.90619 0.91913 0.91047 0.91186 0.91362 0.91218 0.84510 0.86806 0.89752 0.86396 0.82315 0.77840 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -2.26 6.30 30.59 0.19 -2.07 16 3 C 0.06 1.52 5.31 71.98 0.38 1.91 16 4 O -0.31 -10.02 10.11 -90.22 -0.91 -10.93 16 5 C 0.33 11.34 7.48 84.75 0.63 11.98 16 6 C -0.18 -7.06 9.49 22.69 0.22 -6.84 16 7 C 0.06 2.42 5.63 -19.84 -0.11 2.31 16 8 C 0.13 6.01 5.94 41.86 0.25 6.25 16 9 C -0.19 -10.08 8.19 23.07 0.19 -9.89 16 10 C 0.10 5.08 5.59 -21.11 -0.12 4.96 16 11 C -0.48 -24.95 9.12 23.52 0.21 -24.74 16 12 H 0.09 4.19 7.88 -2.91 -0.02 4.17 16 13 C 0.04 1.81 5.26 85.29 0.45 2.26 16 14 N -0.82 -41.01 10.88 21.84 0.24 -40.77 16 15 Si 0.99 36.57 29.58 68.60 2.03 38.59 16 16 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 17 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 18 H -0.26 -9.42 7.11 99.48 0.71 -8.71 16 19 C -0.28 -13.05 9.90 22.87 0.23 -12.83 16 20 C 0.10 4.49 11.15 84.57 0.94 5.43 16 21 N -0.55 -25.39 8.90 -185.36 -1.65 -27.04 16 22 C -0.11 -4.09 6.35 22.64 0.14 -3.95 16 23 Cl -0.04 -1.33 27.14 -2.72 -0.07 -1.40 16 24 C 0.16 4.66 10.97 84.61 0.93 5.59 16 25 N -0.53 -16.50 9.19 -309.08 -2.84 -19.34 16 26 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 31 H 0.07 1.56 8.10 -2.38 -0.02 1.54 16 32 H 0.07 1.57 8.11 -2.39 -0.02 1.55 16 33 H 0.14 5.86 8.04 -2.91 -0.02 5.83 16 34 H 0.11 6.19 6.21 -2.91 -0.02 6.17 16 35 H 0.29 13.23 8.29 -92.71 -0.77 12.46 16 36 H 0.12 5.06 8.06 -2.91 -0.02 5.04 16 37 H 0.16 5.73 8.06 -2.91 -0.02 5.70 16 38 H 0.21 4.24 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -59.28 345.24 3.12 -56.16 By element: Atomic # 1 Polarization: 24.40 SS G_CDS: 1.08 Total: 25.49 kcal Atomic # 6 Polarization: -26.01 SS G_CDS: 5.25 Total: -20.76 kcal Atomic # 7 Polarization: -82.90 SS G_CDS: -4.25 Total: -87.15 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: -0.91 Total: -10.93 kcal Atomic # 14 Polarization: 36.57 SS G_CDS: 2.03 Total: 38.59 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.07 Total: -1.40 kcal Total: -59.28 3.12 -56.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244608413.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.364 kcal (2) G-P(sol) polarization free energy of solvation -59.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.800 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds