Wall clock time and date at job start Tue Mar 31 2020 11:55:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47183 * 2 1 4 4 O 1.42900 * 109.47291 * 180.02562 * 3 2 1 5 5 C 1.35701 * 117.00321 * 179.97438 * 4 3 2 6 6 C 1.38726 * 119.61800 * 179.97438 * 5 4 3 7 7 C 1.39499 * 118.98765 * 180.02562 * 6 5 4 8 8 C 1.48398 * 120.87760 * 179.97438 * 7 6 5 9 9 C 1.40028 * 120.82358 * 310.02673 * 8 7 6 10 10 C 1.38540 * 119.42474 * 179.97438 * 9 8 7 11 11 N 1.31462 * 121.14113 * 359.97438 * 10 9 8 12 12 C 1.33636 * 121.79410 * 0.02562 * 11 10 9 13 13 C 1.41416 * 119.77561 * 179.97438 * 12 11 10 14 14 H 1.08008 * 120.00534 * 180.02562 * 13 12 11 15 15 C 1.40038 * 120.00458 * 0.02562 * 13 12 11 16 16 N 1.30736 * 119.99776 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00550 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47432 * 59.99754 * 17 15 13 19 19 H 1.48504 * 109.47726 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47345 * 299.99775 * 17 15 13 21 21 C 1.39284 * 120.82018 * 129.74133 * 8 7 6 22 22 C 1.39982 * 118.24045 * 0.02562 * 7 6 5 23 23 Cl 1.73596 * 120.43796 * 179.97438 * 22 7 6 24 24 C 1.37985 * 119.12458 * 359.97438 * 22 7 6 25 25 N 1.31993 * 120.93694 * 0.02562 * 24 22 7 26 26 H 1.09006 * 109.47034 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47223 * 299.99909 * 1 2 3 28 28 H 1.08996 * 109.47081 * 60.00162 * 1 2 3 29 29 H 1.08997 * 109.46876 * 239.99748 * 2 1 3 30 30 H 1.09001 * 109.47056 * 120.00320 * 2 1 3 31 31 H 1.08997 * 109.47421 * 60.00081 * 3 2 1 32 32 H 1.08996 * 109.46980 * 299.99900 * 3 2 1 33 33 H 1.07999 * 120.50181 * 0.02562 * 6 5 4 34 34 H 1.07995 * 120.29026 * 359.95336 * 9 8 7 35 35 H 1.07996 * 119.43226 * 179.97438 * 10 9 8 36 36 H 0.97002 * 120.00731 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.58435 * 0.02562 * 21 8 7 38 38 H 1.07998 * 119.53089 * 179.72527 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0851 2.6516 -0.0012 6 6 5.4709 2.7149 -0.0013 7 6 6.0905 3.9647 -0.0014 8 6 7.5699 4.0813 -0.0009 9 6 8.3456 3.3669 0.9204 10 6 9.7247 3.4970 0.8946 11 7 10.3175 4.2790 0.0199 12 6 9.6236 4.9820 -0.8802 13 6 10.3053 5.8107 -1.8012 14 1 9.7480 6.3808 -2.5300 15 6 11.7029 5.8924 -1.7686 16 7 12.3775 5.2028 -0.8862 17 14 12.6033 6.9876 -2.9847 18 1 12.1577 8.3932 -2.8091 19 1 14.0657 6.8986 -2.7426 20 1 12.3023 6.5422 -4.3690 21 6 8.2216 4.8995 -0.9206 22 6 5.2799 5.1059 -0.0009 23 17 5.9908 6.6896 -0.0003 24 6 3.9083 4.9554 -0.0008 25 7 3.3573 3.7559 -0.0007 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8932 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8900 33 1 6.0610 1.8103 -0.0013 34 1 7.8730 2.7204 1.6449 35 1 10.3230 2.9464 1.6053 36 1 13.3456 5.2590 -0.8637 37 1 7.6589 5.4633 -1.6498 38 1 3.2766 5.8313 0.0041 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244609051.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:38 Heat of formation + Delta-G solvation = 12.432639 kcal Electronic energy + Delta-G solvation = -22830.488208 eV Core-core repulsion = 19277.724673 eV Total energy + Delta-G solvation = -3552.763536 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.59857 -38.57134 -37.78441 -36.14113 -34.16678 -33.99617 -32.99956 -30.35916 -29.96933 -29.51720 -26.71308 -25.80399 -23.92602 -23.19253 -21.75068 -21.39157 -20.77886 -18.43174 -17.27211 -16.60418 -16.52779 -16.28688 -15.52134 -14.74364 -14.71772 -14.60553 -14.40719 -14.12949 -13.92730 -13.34882 -12.95802 -12.70034 -12.45930 -12.38364 -12.15706 -12.08054 -11.94812 -11.33317 -11.29795 -11.22865 -11.20217 -10.99424 -10.73787 -10.65238 -10.51917 -10.13733 -9.65934 -9.60087 -9.32525 -8.32187 -8.03752 -7.71800 -7.64529 -6.46083 -4.58107 1.11755 1.12100 2.38497 2.70117 2.77845 3.01648 3.05965 3.08141 3.15719 3.78127 3.91052 4.25469 4.66250 4.67304 4.67798 4.81790 4.93546 5.08212 5.18896 5.23505 5.37681 5.39585 5.66680 5.67944 5.78187 5.81373 5.83140 5.92625 6.00457 6.10394 6.34673 6.41739 6.63925 6.78303 7.05351 7.19903 7.23032 7.41627 7.54588 7.77807 7.88013 8.16052 8.57739 8.83927 10.03729 10.25936 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.002977 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.345965 B = 9403.098939 C = 9995.012855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.070 3.930 4 O -0.305 6.305 5 C 0.322 3.678 6 C -0.172 4.172 7 C 0.072 3.928 8 C -0.017 4.017 9 C -0.295 4.295 10 C 0.125 3.875 11 N -0.478 5.478 12 C 0.254 3.746 13 C -0.427 4.427 14 H 0.084 0.916 15 C 0.068 3.932 16 N -0.714 5.714 17 Si 0.907 3.093 18 H -0.264 1.264 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.226 4.226 22 C -0.121 4.121 23 Cl -0.041 7.041 24 C 0.148 3.852 25 N -0.539 5.539 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.057 0.943 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.065 0.935 32 H 0.065 0.935 33 H 0.149 0.851 34 H 0.097 0.903 35 H 0.122 0.878 36 H 0.274 0.726 37 H 0.104 0.896 38 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.146 -4.309 1.471 16.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.005 4.005 4 O -0.212 6.212 5 C 0.144 3.856 6 C -0.193 4.193 7 C 0.064 3.936 8 C -0.023 4.023 9 C -0.318 4.318 10 C -0.040 4.040 11 N -0.191 5.191 12 C 0.129 3.871 13 C -0.458 4.458 14 H 0.102 0.898 15 C -0.157 4.157 16 N -0.335 5.335 17 Si 0.731 3.269 18 H -0.189 1.189 19 H -0.202 1.202 20 H -0.189 1.189 21 C -0.249 4.249 22 C -0.151 4.151 23 Cl -0.012 7.012 24 C -0.008 4.008 25 N -0.263 5.263 26 H 0.081 0.919 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.084 0.916 33 H 0.167 0.833 34 H 0.115 0.885 35 H 0.139 0.861 36 H 0.085 0.915 37 H 0.122 0.878 38 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -15.751 -4.487 1.520 16.448 hybrid contribution 0.181 0.704 -0.447 0.854 sum -15.570 -3.782 1.073 16.059 Atomic orbital electron populations 1.21669 0.94272 1.02300 1.02285 1.21531 0.96088 0.95171 1.03579 1.22681 0.77538 0.97780 1.02512 1.86226 1.22621 1.24522 1.87874 1.19670 0.89104 0.84459 0.92379 1.21136 0.91387 0.98800 1.07940 1.19147 0.94478 0.90129 0.89840 1.18293 0.87653 0.98690 0.97657 1.21244 0.95319 1.09612 1.05650 1.22449 0.90801 0.94926 0.95816 1.68711 1.37526 1.08154 1.04708 1.18522 0.87563 0.90377 0.90618 1.19592 0.91392 1.21551 1.13280 0.89804 1.26065 0.98243 0.95551 0.95858 1.70111 1.07957 1.28782 1.26622 0.86390 0.78372 0.80949 0.81173 1.18885 1.20169 1.18874 1.21824 0.95854 1.04533 1.02735 1.21971 0.93813 0.88279 1.11008 1.98384 1.83853 1.22063 1.96891 1.22181 0.90533 0.94130 0.93960 1.67328 1.40059 0.98223 1.20730 0.91864 0.92362 0.92344 0.90922 0.90939 0.91657 0.91649 0.83298 0.88520 0.86080 0.91459 0.87765 0.81766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 9.91 37.16 0.37 -0.59 16 2 C -0.13 -1.06 6.30 -26.74 -0.17 -1.23 16 3 C 0.07 0.77 5.31 37.16 0.20 0.96 16 4 O -0.30 -4.30 10.11 -18.81 -0.19 -4.49 16 5 C 0.32 5.03 7.48 -17.19 -0.13 4.90 16 6 C -0.17 -2.88 9.61 -38.93 -0.37 -3.26 16 7 C 0.07 1.33 5.53 -104.59 -0.58 0.76 16 8 C -0.02 -0.36 5.18 -104.65 -0.54 -0.90 16 9 C -0.29 -6.39 9.69 -38.80 -0.38 -6.77 16 10 C 0.13 2.95 11.17 -17.60 -0.20 2.75 16 11 N -0.48 -12.86 7.85 -11.20 -0.09 -12.94 16 12 C 0.25 6.75 6.55 -85.02 -0.56 6.19 16 13 C -0.43 -11.18 9.14 -37.70 -0.34 -11.52 16 14 H 0.08 2.05 7.85 -52.48 -0.41 1.64 16 15 C 0.07 1.71 5.50 -17.34 -0.10 1.62 16 16 N -0.71 -18.68 11.46 55.55 0.64 -18.04 16 17 Si 0.91 18.33 29.56 -169.99 -5.02 13.31 16 18 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 20 H -0.26 -5.26 7.11 56.52 0.40 -4.86 16 21 C -0.23 -5.36 8.13 -38.34 -0.31 -5.67 16 22 C -0.12 -2.03 6.32 -39.02 -0.25 -2.28 16 23 Cl -0.04 -0.69 26.32 -51.86 -1.36 -2.06 16 24 C 0.15 2.13 10.97 -17.57 -0.19 1.94 16 25 N -0.54 -8.09 9.19 -13.38 -0.12 -8.21 16 26 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.36 8.14 -51.92 -0.42 -0.06 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.15 2.39 8.06 -52.49 -0.42 1.96 16 34 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 35 H 0.12 2.52 8.06 -52.49 -0.42 2.10 16 36 H 0.27 6.52 8.29 -40.82 -0.34 6.18 16 37 H 0.10 2.36 7.32 -52.49 -0.38 1.98 16 38 H 0.17 1.86 8.06 -52.49 -0.42 1.43 16 LS Contribution 345.20 15.07 5.20 5.20 Total: -1.00 -28.56 345.20 -9.08 -37.63 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: -4.58 Total: 2.68 kcal Atomic # 6 Polarization: -9.55 SS G_CDS: -3.55 Total: -13.09 kcal Atomic # 7 Polarization: -39.62 SS G_CDS: 0.43 Total: -39.19 kcal Atomic # 8 Polarization: -4.30 SS G_CDS: -0.19 Total: -4.49 kcal Atomic # 14 Polarization: 18.33 SS G_CDS: -5.02 Total: 13.31 kcal Atomic # 17 Polarization: -0.69 SS G_CDS: -1.36 Total: -2.06 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -28.56 -9.08 -37.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244609051.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.066 kcal (2) G-P(sol) polarization free energy of solvation -28.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds