Wall clock time and date at job start Tue Mar 31 2020 11:55:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47183 * 2 1 4 4 O 1.42900 * 109.47291 * 180.02562 * 3 2 1 5 5 C 1.35701 * 117.00321 * 179.97438 * 4 3 2 6 6 C 1.38726 * 119.61800 * 179.97438 * 5 4 3 7 7 C 1.39499 * 118.98765 * 180.02562 * 6 5 4 8 8 C 1.48398 * 120.87760 * 179.97438 * 7 6 5 9 9 C 1.40028 * 120.82358 * 310.02673 * 8 7 6 10 10 C 1.38540 * 119.42474 * 179.97438 * 9 8 7 11 11 N 1.31462 * 121.14113 * 359.97438 * 10 9 8 12 12 C 1.33636 * 121.79410 * 0.02562 * 11 10 9 13 13 C 1.41416 * 119.77561 * 179.97438 * 12 11 10 14 14 H 1.08008 * 120.00534 * 180.02562 * 13 12 11 15 15 C 1.40038 * 120.00458 * 0.02562 * 13 12 11 16 16 N 1.30736 * 119.99776 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 120.00550 * 180.02562 * 15 13 12 18 18 H 1.48501 * 109.47432 * 59.99754 * 17 15 13 19 19 H 1.48504 * 109.47726 * 179.97438 * 17 15 13 20 20 H 1.48503 * 109.47345 * 299.99775 * 17 15 13 21 21 C 1.39284 * 120.82018 * 129.74133 * 8 7 6 22 22 C 1.39982 * 118.24045 * 0.02562 * 7 6 5 23 23 Cl 1.73596 * 120.43796 * 179.97438 * 22 7 6 24 24 C 1.37985 * 119.12458 * 359.97438 * 22 7 6 25 25 N 1.31993 * 120.93694 * 0.02562 * 24 22 7 26 26 H 1.09006 * 109.47034 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.47223 * 299.99909 * 1 2 3 28 28 H 1.08996 * 109.47081 * 60.00162 * 1 2 3 29 29 H 1.08997 * 109.46876 * 239.99748 * 2 1 3 30 30 H 1.09001 * 109.47056 * 120.00320 * 2 1 3 31 31 H 1.08997 * 109.47421 * 60.00081 * 3 2 1 32 32 H 1.08996 * 109.46980 * 299.99900 * 3 2 1 33 33 H 1.07999 * 120.50181 * 0.02562 * 6 5 4 34 34 H 1.07995 * 120.29026 * 359.95336 * 9 8 7 35 35 H 1.07996 * 119.43226 * 179.97438 * 10 9 8 36 36 H 0.97002 * 120.00731 * 179.97438 * 16 15 13 37 37 H 1.08000 * 120.58435 * 0.02562 * 21 8 7 38 38 H 1.07998 * 119.53089 * 179.72527 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 8 3.4690 1.4425 -0.0006 5 6 4.0851 2.6516 -0.0012 6 6 5.4709 2.7149 -0.0013 7 6 6.0905 3.9647 -0.0014 8 6 7.5699 4.0813 -0.0009 9 6 8.3456 3.3669 0.9204 10 6 9.7247 3.4970 0.8946 11 7 10.3175 4.2790 0.0199 12 6 9.6236 4.9820 -0.8802 13 6 10.3053 5.8107 -1.8012 14 1 9.7480 6.3808 -2.5300 15 6 11.7029 5.8924 -1.7686 16 7 12.3775 5.2028 -0.8862 17 14 12.6033 6.9876 -2.9847 18 1 12.1577 8.3932 -2.8091 19 1 14.0657 6.8986 -2.7426 20 1 12.3023 6.5422 -4.3690 21 6 8.2216 4.8995 -0.9206 22 6 5.2799 5.1059 -0.0009 23 17 5.9908 6.6896 -0.0003 24 6 3.9083 4.9554 -0.0008 25 7 3.3573 3.7559 -0.0007 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8932 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9562 -0.8900 33 1 6.0610 1.8103 -0.0013 34 1 7.8730 2.7204 1.6449 35 1 10.3230 2.9464 1.6053 36 1 13.3456 5.2590 -0.8637 37 1 7.6589 5.4633 -1.6498 38 1 3.2766 5.8313 0.0041 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244609051.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:37 Heat of formation + Delta-G solvation = -3.090670 kcal Electronic energy + Delta-G solvation = -22831.161350 eV Core-core repulsion = 19277.724673 eV Total energy + Delta-G solvation = -3553.436677 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.83649 -40.14404 -39.15268 -37.43924 -35.75513 -34.87128 -34.61414 -31.99888 -31.47565 -31.04137 -27.67223 -27.55040 -25.29142 -24.54187 -23.15124 -22.68677 -22.17789 -19.87662 -18.72137 -18.00884 -17.65184 -17.49808 -17.21533 -16.27473 -16.18483 -15.89108 -15.69127 -15.48511 -15.24870 -14.52351 -14.31194 -14.13624 -13.92326 -13.70741 -13.41016 -13.05167 -13.01122 -12.89850 -12.85988 -12.75409 -12.31318 -12.18962 -12.07405 -11.98320 -11.82400 -11.52860 -11.30522 -10.99619 -10.86886 -9.83882 -9.59471 -9.52416 -9.47611 -8.30329 -6.51963 -0.27197 -0.11530 0.88899 1.08711 1.09794 1.40836 1.52664 1.54145 1.89603 2.22748 2.49487 2.83898 3.10659 3.44753 3.73624 3.79762 3.93286 3.97641 4.01286 4.21844 4.33540 4.37259 4.53565 4.57062 4.57611 4.65830 4.76608 4.81860 4.84568 4.98071 5.07341 5.12993 5.18794 5.21664 5.36639 5.42533 5.58392 5.76144 6.06238 6.09153 6.25727 6.55500 6.70345 6.93301 8.16751 8.44370 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.021694 B = 0.002977 C = 0.002801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1290.345965 B = 9403.098939 C = 9995.012855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.122 4.122 3 C 0.065 3.935 4 O -0.311 6.311 5 C 0.326 3.674 6 C -0.175 4.175 7 C 0.050 3.950 8 C -0.009 4.009 9 C -0.286 4.286 10 C 0.107 3.893 11 N -0.514 5.514 12 C 0.225 3.775 13 C -0.464 4.464 14 H 0.087 0.913 15 C 0.025 3.975 16 N -0.754 5.754 17 Si 0.984 3.016 18 H -0.259 1.259 19 H -0.268 1.268 20 H -0.259 1.259 21 C -0.238 4.238 22 C -0.130 4.130 23 Cl -0.047 7.047 24 C 0.164 3.836 25 N -0.533 5.533 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.152 0.848 34 H 0.124 0.876 35 H 0.142 0.858 36 H 0.280 0.720 37 H 0.107 0.893 38 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.264 -4.523 1.376 18.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.160 4.160 3 C -0.010 4.010 4 O -0.218 6.218 5 C 0.147 3.853 6 C -0.196 4.196 7 C 0.042 3.958 8 C -0.016 4.016 9 C -0.309 4.309 10 C -0.056 4.056 11 N -0.228 5.228 12 C 0.100 3.900 13 C -0.496 4.496 14 H 0.106 0.894 15 C -0.197 4.197 16 N -0.376 5.376 17 Si 0.804 3.196 18 H -0.184 1.184 19 H -0.192 1.192 20 H -0.183 1.183 21 C -0.261 4.261 22 C -0.159 4.159 23 Cl -0.019 7.019 24 C 0.008 3.992 25 N -0.257 5.257 26 H 0.094 0.906 27 H 0.080 0.920 28 H 0.080 0.920 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.085 0.915 33 H 0.170 0.830 34 H 0.142 0.858 35 H 0.159 0.841 36 H 0.090 0.910 37 H 0.125 0.875 38 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges -17.896 -4.730 1.441 18.567 hybrid contribution 0.609 0.637 -0.319 0.937 sum -17.287 -4.093 1.122 17.800 Atomic orbital electron populations 1.21666 0.92612 1.03263 1.02652 1.21555 0.97369 0.93427 1.03616 1.22968 0.75712 0.99600 1.02695 1.86238 1.24484 1.23730 1.87354 1.19695 0.88856 0.85171 0.91536 1.21119 0.92185 0.98220 1.08084 1.18999 0.92834 0.91642 0.92302 1.18523 0.89671 0.97050 0.96306 1.21554 0.94771 1.09050 1.05543 1.22888 0.92123 0.94826 0.95808 1.68656 1.38863 1.09431 1.05832 1.18919 0.88993 0.90942 0.91109 1.19927 0.92627 1.22790 1.14235 0.89446 1.26954 0.98560 0.96665 0.97526 1.70206 1.08445 1.30466 1.28469 0.85243 0.77147 0.78746 0.78488 1.18362 1.19224 1.18279 1.21814 0.94980 1.05631 1.03634 1.22071 0.94598 0.87488 1.11768 1.98384 1.84121 1.22396 1.96960 1.22691 0.89859 0.95004 0.91689 1.67471 1.39700 0.98225 1.20312 0.90637 0.91956 0.92037 0.90985 0.90851 0.91344 0.91505 0.82986 0.85822 0.84052 0.90978 0.87523 0.78281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.91 71.98 0.71 -0.79 16 2 C -0.12 -1.78 6.30 30.59 0.19 -1.59 16 3 C 0.06 1.27 5.31 71.98 0.38 1.65 16 4 O -0.31 -8.13 10.11 -90.21 -0.91 -9.04 16 5 C 0.33 9.50 7.48 84.74 0.63 10.14 16 6 C -0.18 -5.64 9.61 22.69 0.22 -5.42 16 7 C 0.05 1.81 5.53 -19.84 -0.11 1.70 16 8 C -0.01 -0.39 5.18 -19.88 -0.10 -0.50 16 9 C -0.29 -12.29 9.69 22.78 0.22 -12.07 16 10 C 0.11 5.12 11.17 84.82 0.95 6.06 16 11 N -0.51 -28.52 7.85 -189.35 -1.49 -30.00 16 12 C 0.23 12.39 6.55 40.20 0.26 12.66 16 13 C -0.46 -25.16 9.14 23.49 0.21 -24.94 16 14 H 0.09 4.44 7.85 -2.91 -0.02 4.42 16 15 C 0.02 1.27 5.50 85.29 0.47 1.73 16 16 N -0.75 -40.65 11.46 21.84 0.25 -40.40 16 17 Si 0.98 38.14 29.56 68.60 2.03 40.17 16 18 H -0.26 -9.74 7.11 99.48 0.71 -9.04 16 19 H -0.27 -9.87 7.11 99.48 0.71 -9.16 16 20 H -0.26 -9.68 7.11 99.48 0.71 -8.98 16 21 C -0.24 -11.51 8.13 23.07 0.19 -11.33 16 22 C -0.13 -4.16 6.32 22.63 0.14 -4.02 16 23 Cl -0.05 -1.57 26.32 -2.72 -0.07 -1.64 16 24 C 0.16 4.29 10.97 84.61 0.93 5.21 16 25 N -0.53 -14.55 9.19 -309.09 -2.84 -17.39 16 26 H 0.07 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 32 H 0.07 1.30 8.10 -2.39 -0.02 1.28 16 33 H 0.15 4.70 8.06 -2.91 -0.02 4.67 16 34 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 35 H 0.14 5.91 8.06 -2.91 -0.02 5.89 16 36 H 0.28 13.64 8.29 -92.71 -0.77 12.87 16 37 H 0.11 4.97 7.32 -2.91 -0.02 4.95 16 38 H 0.20 3.75 8.06 -2.91 -0.02 3.73 16 Total: -1.00 -62.81 345.20 3.35 -59.46 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 1.08 Total: 20.34 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: 5.30 Total: -21.49 kcal Atomic # 7 Polarization: -83.72 SS G_CDS: -4.08 Total: -87.79 kcal Atomic # 8 Polarization: -8.13 SS G_CDS: -0.91 Total: -9.04 kcal Atomic # 14 Polarization: 38.14 SS G_CDS: 2.03 Total: 40.17 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.07 Total: -1.64 kcal Total: -62.81 3.35 -59.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244609051.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.371 kcal (2) G-P(sol) polarization free energy of solvation -62.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds