Wall clock time and date at job start Tue Mar 31 2020 11:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 O 1.42898 * 109.46888 * 179.97438 * 3 2 1 5 5 C 1.35704 * 117.00448 * 179.97438 * 4 3 2 6 6 C 1.38636 * 119.60237 * 180.02562 * 5 4 3 7 7 C 1.39822 * 118.94824 * 180.02562 * 6 5 4 8 8 C 1.47867 * 120.90746 * 179.97438 * 7 6 5 9 9 C 1.39644 * 120.64660 * 65.02651 * 8 7 6 10 10 C 1.38426 * 118.47312 * 179.97438 * 9 8 7 11 11 C 1.39043 * 119.71774 * 359.97438 * 10 9 8 12 12 N 1.31284 * 121.33175 * 0.02562 * 11 10 9 13 13 C 1.33671 * 121.63763 * 359.97438 * 12 11 10 14 14 C 1.40870 * 119.93315 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99932 * 179.97438 * 14 13 12 16 16 C 1.40178 * 120.00007 * 359.97438 * 14 13 12 17 17 N 1.30678 * 119.99774 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99906 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47520 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47257 * 120.00280 * 18 16 14 21 21 H 1.48500 * 109.46921 * 240.00128 * 18 16 14 22 22 C 1.40297 * 118.18186 * 0.27398 * 7 6 5 23 23 Cl 1.73599 * 120.46024 * 179.70619 * 22 7 6 24 24 C 1.37917 * 119.08038 * 359.45401 * 22 7 6 25 25 N 1.32022 * 120.96637 * 0.56413 * 24 22 7 26 26 H 1.08997 * 109.46842 * 60.00255 * 1 2 3 27 27 H 1.08998 * 109.46896 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46666 * 300.00053 * 1 2 3 29 29 H 1.08996 * 109.46575 * 239.99328 * 2 1 3 30 30 H 1.09005 * 109.46740 * 120.00063 * 2 1 3 31 31 H 1.08992 * 109.47315 * 60.00050 * 3 2 1 32 32 H 1.08997 * 109.47130 * 299.99568 * 3 2 1 33 33 H 1.07996 * 120.52434 * 0.04120 * 6 5 4 34 34 H 1.07996 * 120.75868 * 359.97140 * 9 8 7 35 35 H 1.08005 * 120.14198 * 180.02562 * 10 9 8 36 36 H 1.08003 * 119.33122 * 180.27757 * 11 10 9 37 37 H 0.96997 * 119.99527 * 180.02562 * 17 16 14 38 38 H 1.08009 * 119.51959 * 180.27462 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0852 2.6515 0.0001 6 6 5.4701 2.7143 0.0001 7 6 6.0908 3.9673 0.0002 8 6 7.5648 4.0847 0.0008 9 6 8.3151 3.6355 -1.0879 10 6 9.6922 3.7680 -1.0400 11 6 10.2912 4.3390 0.0773 12 7 9.5767 4.7583 1.0957 13 6 8.2439 4.6567 1.1062 14 6 7.5125 5.1178 2.2184 15 1 6.4357 5.0367 2.2279 16 6 8.1826 5.6821 3.3128 17 7 9.4856 5.7807 3.3011 18 14 7.2128 6.2929 4.7879 19 1 5.7634 6.0689 4.5547 20 1 7.6397 5.5521 6.0022 21 1 7.4644 7.7439 4.9792 22 6 5.2767 5.1099 0.0062 23 17 5.9849 6.6949 0.0143 24 6 3.9061 4.9566 0.0002 25 7 3.3569 3.7560 0.0002 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 6.0603 1.8099 -0.0002 34 1 7.8320 3.1948 -1.9474 35 1 10.2986 3.4300 -1.8673 36 1 11.3658 4.4435 0.1061 37 1 9.9492 6.1708 4.0585 38 1 3.2727 5.8314 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244609084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:31 Heat of formation + Delta-G solvation = 12.572950 kcal Electronic energy + Delta-G solvation = -23600.410380 eV Core-core repulsion = 20047.652928 eV Total energy + Delta-G solvation = -3552.757451 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.26664 -38.46583 -37.56911 -35.71746 -33.97800 -33.76828 -33.03011 -30.41981 -29.95889 -29.14763 -26.58864 -25.80753 -23.69956 -22.69757 -21.72092 -21.37723 -20.56101 -17.81081 -17.57599 -16.69944 -16.32552 -15.90100 -15.65751 -14.62880 -14.54900 -14.47637 -14.29568 -14.12961 -13.56573 -13.07353 -12.77485 -12.69858 -12.30251 -12.27338 -11.93975 -11.88424 -11.76818 -11.28909 -11.25348 -11.13987 -11.10237 -10.94245 -10.56554 -10.44126 -10.35803 -10.08386 -9.48597 -9.30309 -9.13176 -8.28015 -7.95300 -7.69979 -7.57923 -6.55180 -4.64432 1.47491 1.55861 2.61500 2.79626 2.86597 3.03417 3.08371 3.14810 3.26242 3.86162 4.09412 4.56080 4.63836 4.80593 4.82103 5.09448 5.19094 5.37248 5.43638 5.44534 5.54059 5.63990 5.78060 5.78422 5.94327 5.97975 5.99921 6.06171 6.06725 6.22316 6.42997 6.60487 6.75226 6.78497 6.97199 7.19208 7.43380 7.49441 7.58956 7.89937 8.11190 8.11853 8.50053 8.79193 9.96448 10.15337 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.004443 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.470672 B = 6300.781174 C = 7025.128612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.126 4.126 3 C 0.071 3.929 4 O -0.308 6.308 5 C 0.317 3.683 6 C -0.185 4.185 7 C 0.114 3.886 8 C -0.254 4.254 9 C -0.019 4.019 10 C -0.322 4.322 11 C 0.139 3.861 12 N -0.479 5.479 13 C 0.280 3.720 14 C -0.400 4.400 15 H 0.084 0.916 16 C 0.071 3.929 17 N -0.703 5.703 18 Si 0.899 3.101 19 H -0.257 1.257 20 H -0.271 1.271 21 H -0.270 1.270 22 C -0.115 4.115 23 Cl -0.043 7.043 24 C 0.139 3.861 25 N -0.547 5.547 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.141 0.859 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.275 0.725 38 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.016 -4.399 -4.139 12.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.163 4.163 3 C -0.004 4.004 4 O -0.216 6.216 5 C 0.139 3.861 6 C -0.206 4.206 7 C 0.105 3.895 8 C -0.259 4.259 9 C -0.044 4.044 10 C -0.345 4.345 11 C -0.031 4.031 12 N -0.190 5.190 13 C 0.158 3.842 14 C -0.430 4.430 15 H 0.102 0.898 16 C -0.157 4.157 17 N -0.323 5.323 18 Si 0.722 3.278 19 H -0.180 1.180 20 H -0.196 1.196 21 H -0.195 1.195 22 C -0.144 4.144 23 Cl -0.014 7.014 24 C -0.016 4.016 25 N -0.272 5.272 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.159 0.841 34 H 0.115 0.885 35 H 0.115 0.885 36 H 0.138 0.862 37 H 0.086 0.914 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.215 -4.146 -3.226 12.385 hybrid contribution 0.017 0.230 -0.117 0.259 sum -11.199 -3.916 -3.343 12.326 Atomic orbital electron populations 1.21668 0.94420 1.02150 1.02256 1.21527 0.95975 0.95405 1.03438 1.22612 0.78002 0.97437 1.02363 1.86204 1.22246 1.24941 1.88251 1.19638 0.89134 0.84275 0.93073 1.21229 0.91102 0.98830 1.09429 1.18758 0.93984 0.89353 0.87372 1.19015 0.88948 1.17704 1.00266 1.20784 0.93661 0.94629 0.95336 1.21188 0.94551 1.16670 1.02112 1.22635 0.98871 0.92102 0.89482 1.68774 1.06063 1.19727 1.24424 1.18355 0.88027 0.87769 0.90092 1.19652 0.94585 1.30468 0.98269 0.89753 1.26099 0.94915 0.94806 0.99835 1.70098 1.08154 1.25959 1.28103 0.86373 0.81346 0.79264 0.80774 1.18048 1.19572 1.19466 1.22088 0.93475 0.88441 1.10441 1.98357 1.84231 1.22075 1.96753 1.22085 0.90775 0.93888 0.94853 1.67268 1.40068 0.98205 1.21627 0.92409 0.91988 0.92366 0.91069 0.90996 0.91798 0.91865 0.84091 0.88548 0.88496 0.86240 0.91350 0.82356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 9.91 37.16 0.37 -0.77 16 2 C -0.13 -1.23 6.30 -26.73 -0.17 -1.40 16 3 C 0.07 0.91 5.31 37.16 0.20 1.10 16 4 O -0.31 -4.97 10.11 -18.82 -0.19 -5.16 16 5 C 0.32 5.67 7.48 -17.20 -0.13 5.55 16 6 C -0.18 -3.54 9.80 -38.84 -0.38 -3.92 16 7 C 0.11 2.37 4.49 -104.59 -0.47 1.90 16 8 C -0.25 -5.86 4.82 -104.08 -0.50 -6.36 16 9 C -0.02 -0.42 9.89 -38.99 -0.39 -0.81 16 10 C -0.32 -6.88 10.10 -39.21 -0.40 -7.27 16 11 C 0.14 3.21 11.17 -17.49 -0.20 3.01 16 12 N -0.48 -12.58 7.85 -10.91 -0.09 -12.67 16 13 C 0.28 7.20 6.13 -84.72 -0.52 6.68 16 14 C -0.40 -10.16 7.34 -37.86 -0.28 -10.43 16 15 H 0.08 2.10 5.91 -52.49 -0.31 1.79 16 16 C 0.07 1.73 5.50 -17.31 -0.10 1.64 16 17 N -0.70 -17.93 11.46 55.56 0.64 -17.30 16 18 Si 0.90 18.37 29.56 -169.99 -5.02 13.35 16 19 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 20 H -0.27 -5.43 7.11 56.52 0.40 -5.02 16 21 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 22 C -0.11 -2.23 5.24 -38.93 -0.20 -2.43 16 23 Cl -0.04 -0.85 26.28 -51.86 -1.36 -2.21 16 24 C 0.14 2.38 10.96 -17.59 -0.19 2.19 16 25 N -0.55 -9.53 9.19 -13.40 -0.12 -9.66 16 26 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 32 H 0.06 0.79 8.10 -51.93 -0.42 0.37 16 33 H 0.14 2.57 8.06 -52.49 -0.42 2.15 16 34 H 0.10 1.84 8.06 -52.49 -0.42 1.42 16 35 H 0.10 1.80 8.06 -52.48 -0.42 1.38 16 36 H 0.12 2.44 8.06 -52.48 -0.42 2.02 16 37 H 0.28 6.35 8.29 -40.82 -0.34 6.01 16 38 H 0.16 2.23 8.06 -52.48 -0.42 1.80 16 LS Contribution 341.64 15.07 5.15 5.15 Total: -1.00 -27.93 341.64 -8.87 -36.80 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -4.51 Total: 3.01 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: -3.35 Total: -11.32 kcal Atomic # 7 Polarization: -40.05 SS G_CDS: 0.43 Total: -39.62 kcal Atomic # 8 Polarization: -4.97 SS G_CDS: -0.19 Total: -5.16 kcal Atomic # 14 Polarization: 18.37 SS G_CDS: -5.02 Total: 13.35 kcal Atomic # 17 Polarization: -0.85 SS G_CDS: -1.36 Total: -2.21 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -27.93 -8.87 -36.80 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244609084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.371 kcal (2) G-P(sol) polarization free energy of solvation -27.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.438 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.798 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds