Wall clock time and date at job start Tue Mar 31 2020 11:55:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.52996 * 109.46969 * 2 1 4 4 O 1.42898 * 109.46888 * 179.97438 * 3 2 1 5 5 C 1.35704 * 117.00448 * 179.97438 * 4 3 2 6 6 C 1.38636 * 119.60237 * 180.02562 * 5 4 3 7 7 C 1.39822 * 118.94824 * 180.02562 * 6 5 4 8 8 C 1.47867 * 120.90746 * 179.97438 * 7 6 5 9 9 C 1.39644 * 120.64660 * 65.02651 * 8 7 6 10 10 C 1.38426 * 118.47312 * 179.97438 * 9 8 7 11 11 C 1.39043 * 119.71774 * 359.97438 * 10 9 8 12 12 N 1.31284 * 121.33175 * 0.02562 * 11 10 9 13 13 C 1.33671 * 121.63763 * 359.97438 * 12 11 10 14 14 C 1.40870 * 119.93315 * 179.97438 * 13 12 11 15 15 H 1.07999 * 119.99932 * 179.97438 * 14 13 12 16 16 C 1.40178 * 120.00007 * 359.97438 * 14 13 12 17 17 N 1.30678 * 119.99774 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99906 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47520 * 359.97438 * 18 16 14 20 20 H 1.48507 * 109.47257 * 120.00280 * 18 16 14 21 21 H 1.48500 * 109.46921 * 240.00128 * 18 16 14 22 22 C 1.40297 * 118.18186 * 0.27398 * 7 6 5 23 23 Cl 1.73599 * 120.46024 * 179.70619 * 22 7 6 24 24 C 1.37917 * 119.08038 * 359.45401 * 22 7 6 25 25 N 1.32022 * 120.96637 * 0.56413 * 24 22 7 26 26 H 1.08997 * 109.46842 * 60.00255 * 1 2 3 27 27 H 1.08998 * 109.46896 * 180.02562 * 1 2 3 28 28 H 1.09004 * 109.46666 * 300.00053 * 1 2 3 29 29 H 1.08996 * 109.46575 * 239.99328 * 2 1 3 30 30 H 1.09005 * 109.46740 * 120.00063 * 2 1 3 31 31 H 1.08992 * 109.47315 * 60.00050 * 3 2 1 32 32 H 1.08997 * 109.47130 * 299.99568 * 3 2 1 33 33 H 1.07996 * 120.52434 * 0.04120 * 6 5 4 34 34 H 1.07996 * 120.75868 * 359.97140 * 9 8 7 35 35 H 1.08005 * 120.14198 * 180.02562 * 10 9 8 36 36 H 1.08003 * 119.33122 * 180.27757 * 11 10 9 37 37 H 0.96997 * 119.99527 * 180.02562 * 17 16 14 38 38 H 1.08009 * 119.51959 * 180.27462 * 24 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 3.4690 1.4425 0.0006 5 6 4.0852 2.6515 0.0001 6 6 5.4701 2.7143 0.0001 7 6 6.0908 3.9673 0.0002 8 6 7.5648 4.0847 0.0008 9 6 8.3151 3.6355 -1.0879 10 6 9.6922 3.7680 -1.0400 11 6 10.2912 4.3390 0.0773 12 7 9.5767 4.7583 1.0957 13 6 8.2439 4.6567 1.1062 14 6 7.5125 5.1178 2.2184 15 1 6.4357 5.0367 2.2279 16 6 8.1826 5.6821 3.3128 17 7 9.4856 5.7807 3.3011 18 14 7.2128 6.2929 4.7879 19 1 5.7634 6.0689 4.5547 20 1 7.6397 5.5521 6.0022 21 1 7.4644 7.7439 4.9792 22 6 5.2767 5.1099 0.0062 23 17 5.9849 6.6949 0.0143 24 6 3.9061 4.9566 0.0002 25 7 3.3569 3.7560 0.0002 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 6.0603 1.8099 -0.0002 34 1 7.8320 3.1948 -1.9474 35 1 10.2986 3.4300 -1.8673 36 1 11.3658 4.4435 0.1061 37 1 9.9492 6.1708 4.0585 38 1 3.2727 5.8314 0.0003 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244609084.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:55:31 Heat of formation + Delta-G solvation = -2.338074 kcal Electronic energy + Delta-G solvation = -23601.056970 eV Core-core repulsion = 20047.652928 eV Total energy + Delta-G solvation = -3553.404042 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.67230 -40.09275 -38.98882 -37.20123 -35.56045 -34.85096 -34.60085 -32.19409 -31.38617 -30.75935 -27.83036 -27.31701 -25.18570 -24.16421 -23.29571 -22.54578 -22.02612 -19.41005 -19.16157 -18.11635 -17.49431 -17.38831 -17.31541 -16.24508 -16.14596 -15.76889 -15.57400 -15.42328 -15.01869 -14.40593 -14.27478 -14.10133 -13.74581 -13.58226 -13.31603 -13.10035 -12.98510 -12.90735 -12.82554 -12.68627 -12.26016 -12.08096 -11.98474 -11.92139 -11.79312 -11.49095 -11.23827 -10.79872 -10.65891 -10.04252 -9.50378 -9.45583 -9.27024 -8.33507 -6.49100 0.03199 0.04511 0.88396 1.14535 1.32574 1.36772 1.49441 1.49858 2.00882 2.18332 2.64334 2.83983 3.24215 3.71884 3.87511 3.98727 3.99024 4.00277 4.11313 4.32228 4.36985 4.43863 4.50422 4.58668 4.62112 4.74676 4.80352 4.86255 4.95233 5.10240 5.12148 5.18854 5.19443 5.27208 5.38748 5.46822 5.67610 5.85335 6.13636 6.19235 6.28846 6.69629 6.70070 6.96638 8.17274 8.39496 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012981 B = 0.004443 C = 0.003985 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.470672 B = 6300.781174 C = 7025.128612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C 0.066 3.934 4 O -0.314 6.314 5 C 0.320 3.680 6 C -0.193 4.193 7 C 0.095 3.905 8 C -0.255 4.255 9 C -0.030 4.030 10 C -0.312 4.312 11 C 0.118 3.882 12 N -0.517 5.517 13 C 0.258 3.742 14 C -0.424 4.424 15 H 0.080 0.920 16 C 0.033 3.967 17 N -0.742 5.742 18 Si 0.961 3.039 19 H -0.257 1.257 20 H -0.264 1.264 21 H -0.263 1.263 22 C -0.127 4.127 23 Cl -0.051 7.051 24 C 0.152 3.848 25 N -0.541 5.541 26 H 0.062 0.938 27 H 0.076 0.924 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.143 0.857 34 H 0.122 0.878 35 H 0.129 0.871 36 H 0.139 0.861 37 H 0.280 0.720 38 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.976 -5.048 -4.670 14.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.009 4.009 4 O -0.222 6.222 5 C 0.142 3.858 6 C -0.213 4.213 7 C 0.086 3.914 8 C -0.260 4.260 9 C -0.054 4.054 10 C -0.335 4.335 11 C -0.050 4.050 12 N -0.229 5.229 13 C 0.135 3.865 14 C -0.454 4.454 15 H 0.098 0.902 16 C -0.191 4.191 17 N -0.363 5.363 18 Si 0.782 3.218 19 H -0.181 1.181 20 H -0.189 1.189 21 H -0.187 1.187 22 C -0.157 4.157 23 Cl -0.022 7.022 24 C -0.004 4.004 25 N -0.266 5.266 26 H 0.081 0.919 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.092 0.908 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.161 0.839 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.156 0.844 37 H 0.091 0.909 38 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -13.167 -4.821 -3.783 14.523 hybrid contribution 0.563 0.315 -0.109 0.654 sum -12.604 -4.506 -3.892 13.939 Atomic orbital electron populations 1.21664 0.92568 1.03272 1.02610 1.21553 0.97404 0.93349 1.03561 1.22919 0.76039 0.99543 1.02416 1.86216 1.24253 1.23984 1.87723 1.19681 0.88938 0.85028 0.92133 1.21222 0.91914 0.98334 1.09877 1.18763 0.93174 0.90568 0.88903 1.19236 0.90409 1.16517 0.99822 1.21151 0.93962 0.94518 0.95806 1.21527 0.94926 1.14895 1.02166 1.23064 0.99885 0.92337 0.89690 1.68709 1.06839 1.21236 1.26137 1.18670 0.88264 0.88429 0.91167 1.19730 0.94399 1.32115 0.99183 0.90160 1.26820 0.95660 0.94569 1.02017 1.70171 1.09504 1.27426 1.29244 0.85453 0.79761 0.78987 0.77622 1.18070 1.18893 1.18721 1.22183 0.94262 0.87762 1.11508 1.98350 1.84531 1.22487 1.96866 1.22563 0.90218 0.94791 0.92823 1.67405 1.39694 0.98166 1.21352 0.91916 0.90507 0.92180 0.90754 0.91111 0.91982 0.91493 0.83884 0.86031 0.85355 0.84351 0.90880 0.79120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.91 71.99 0.71 -1.13 16 2 C -0.12 -2.12 6.30 30.60 0.19 -1.93 16 3 C 0.07 1.54 5.31 71.98 0.38 1.92 16 4 O -0.31 -9.63 10.11 -90.24 -0.91 -10.54 16 5 C 0.32 11.03 7.48 84.72 0.63 11.67 16 6 C -0.19 -7.24 9.80 22.75 0.22 -7.02 16 7 C 0.09 3.91 4.49 -19.84 -0.09 3.82 16 8 C -0.25 -11.78 4.82 -19.51 -0.09 -11.88 16 9 C -0.03 -1.26 9.89 22.65 0.22 -1.04 16 10 C -0.31 -12.96 10.10 22.51 0.23 -12.73 16 11 C 0.12 5.45 11.17 84.97 0.95 6.40 16 12 N -0.52 -27.76 7.85 -188.43 -1.48 -29.24 16 13 C 0.26 13.51 6.13 40.39 0.25 13.76 16 14 C -0.42 -21.97 7.34 23.39 0.17 -21.80 16 15 H 0.08 4.08 5.91 -2.91 -0.02 4.06 16 16 C 0.03 1.64 5.50 85.34 0.47 2.10 16 17 N -0.74 -38.85 11.46 21.86 0.25 -38.60 16 18 Si 0.96 38.03 29.56 68.60 2.03 40.05 16 19 H -0.26 -10.03 7.11 99.48 0.71 -9.33 16 20 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 21 H -0.26 -9.98 7.11 99.48 0.71 -9.27 16 22 C -0.13 -4.86 5.24 22.69 0.12 -4.74 16 23 Cl -0.05 -2.00 26.28 -2.72 -0.07 -2.07 16 24 C 0.15 4.90 10.96 84.59 0.93 5.83 16 25 N -0.54 -17.80 9.19 -309.14 -2.84 -20.64 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 29 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 31 H 0.06 1.48 8.10 -2.39 -0.02 1.46 16 32 H 0.07 1.53 8.10 -2.39 -0.02 1.51 16 33 H 0.14 5.18 8.06 -2.91 -0.02 5.16 16 34 H 0.12 4.42 8.06 -2.91 -0.02 4.40 16 35 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.14 5.64 8.06 -2.91 -0.02 5.61 16 37 H 0.28 13.28 8.29 -92.71 -0.77 12.51 16 38 H 0.19 4.82 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -60.46 341.64 3.35 -57.10 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: 1.08 Total: 20.68 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 5.30 Total: -16.75 kcal Atomic # 7 Polarization: -84.41 SS G_CDS: -4.07 Total: -88.48 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.91 Total: -10.54 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.05 kcal Atomic # 17 Polarization: -2.00 SS G_CDS: -0.07 Total: -2.07 kcal Total: -60.46 3.35 -57.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244609084.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.764 kcal (2) G-P(sol) polarization free energy of solvation -60.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.354 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds