Wall clock time and date at job start Tue Mar 31 2020 12:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21311 * 119.99662 * 2 1 4 4 C 1.46768 * 120.00316 * 179.97438 * 2 1 3 5 5 C 1.40132 * 120.05595 * 0.02562 * 4 2 1 6 6 C 1.36420 * 120.14608 * 179.71846 * 5 4 2 7 7 C 1.39725 * 120.27461 * 0.51742 * 6 5 4 8 8 C 1.48080 * 119.93886 * 179.75982 * 7 6 5 9 9 C 1.39415 * 120.17354 * 64.72587 * 8 7 6 10 10 C 1.37953 * 119.93367 * 180.22903 * 9 8 7 11 11 C 1.38485 * 120.28938 * 359.49083 * 10 9 8 12 12 C 1.38094 * 120.35003 * 0.51238 * 11 10 9 13 13 C 1.38766 * 120.05701 * 359.74234 * 12 11 10 14 14 O 1.35626 * 120.14308 * 180.02562 * 13 12 11 15 15 C 1.34795 * 117.00378 * 354.40366 * 14 13 12 16 16 H 1.08000 * 120.00021 * 5.07366 * 15 14 13 17 17 C 1.38677 * 120.00438 * 185.06726 * 15 14 13 18 18 N 1.31538 * 119.99969 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99660 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.46859 * 90.00027 * 19 17 15 21 21 H 1.48501 * 109.47081 * 209.99834 * 19 17 15 22 22 H 1.48500 * 109.47320 * 329.99749 * 19 17 15 23 23 C 1.39661 * 120.11847 * 359.48209 * 7 6 5 24 24 F 1.35099 * 120.07737 * 180.23206 * 23 7 6 25 25 C 1.38186 * 119.84655 * 0.25682 * 23 7 6 26 26 F 1.35098 * 120.13263 * 179.97438 * 25 23 7 27 27 H 1.09000 * 109.47221 * 270.00187 * 1 2 3 28 28 H 1.09000 * 109.47390 * 30.00446 * 1 2 3 29 29 H 1.09005 * 109.46898 * 150.00489 * 1 2 3 30 30 H 1.07995 * 119.92766 * 359.97438 * 5 4 2 31 31 H 1.08005 * 119.86148 * 180.27982 * 6 5 4 32 32 H 1.08001 * 120.02839 * 359.95545 * 9 8 7 33 33 H 1.08001 * 119.85475 * 179.74420 * 10 9 8 34 34 H 1.08004 * 119.82823 * 180.25432 * 11 10 9 35 35 H 1.08004 * 119.97195 * 179.76810 * 12 11 10 36 36 H 0.97000 * 120.00162 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2409 -1.2710 0.0006 5 6 1.5415 -2.4853 0.0006 6 6 2.2218 -3.6678 -0.0047 7 6 3.6190 -3.6766 0.0008 8 6 4.3499 -4.9645 0.0004 9 6 4.2525 -5.8251 -1.0921 10 6 4.9317 -7.0258 -1.0852 11 6 5.7195 -7.3765 -0.0015 12 6 5.8244 -6.5330 1.0868 13 6 5.1432 -5.3241 1.0975 14 8 5.2454 -4.4942 2.1653 15 6 5.9301 -4.9515 3.2325 16 1 6.4365 -5.9040 3.1816 17 6 5.9844 -4.1988 4.3960 18 7 6.6529 -4.6449 5.4373 19 14 5.1080 -2.5515 4.4844 20 1 3.7213 -2.7543 4.9753 21 1 5.8363 -1.6527 5.4157 22 1 5.0699 -1.9378 3.1327 23 6 4.3275 -2.4730 0.0008 24 9 5.6784 -2.4826 0.0013 25 6 3.6434 -1.2724 0.0007 26 9 4.3229 -0.1047 0.0012 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 0.4615 -2.4851 0.0006 31 1 1.6781 -4.6010 -0.0092 32 1 3.6423 -5.5540 -1.9410 33 1 4.8521 -7.6934 -1.9304 34 1 6.2513 -8.3165 -0.0058 35 1 6.4375 -6.8143 1.9303 36 1 6.6906 -4.1187 6.2513 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001244704757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:24 Heat of formation + Delta-G solvation = -96.772756 kcal Electronic energy + Delta-G solvation = -26332.310540 eV Core-core repulsion = 22190.722072 eV Total energy + Delta-G solvation = -4141.588468 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -49.17925 -48.20651 -39.96988 -39.36164 -37.99194 -36.63533 -32.87261 -32.46023 -30.90746 -30.09829 -29.45265 -28.37608 -25.44214 -24.39960 -22.65361 -21.65317 -21.20901 -20.19466 -18.09681 -17.92970 -17.40966 -16.99457 -16.73694 -16.17502 -15.57597 -15.30335 -15.03540 -14.88482 -14.70793 -14.54927 -14.33643 -14.12780 -13.88175 -13.85373 -13.57115 -12.86903 -12.62250 -12.55492 -12.40191 -12.32820 -11.94939 -11.90190 -11.79700 -11.48686 -11.01609 -10.92482 -10.88383 -10.29262 -9.86728 -9.56626 -9.05626 -8.97466 -8.68955 -8.27367 -7.52952 -6.54913 -4.20882 0.33101 1.06531 1.75879 2.10614 2.27028 3.15247 3.19308 3.35386 3.43923 3.63913 4.02054 4.14219 4.26089 4.53873 4.55770 4.64405 4.72393 4.84800 4.93100 4.97464 5.17567 5.20163 5.40864 5.51451 5.52715 5.66520 5.81795 5.85431 5.97479 5.99060 6.04398 6.21461 6.34301 6.52719 6.72364 6.87190 6.98811 7.11271 7.37315 7.42006 7.62895 7.88064 8.79615 9.38394 10.51805 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.006186 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.267876 B = 4525.016764 C = 6098.522498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.394 3.606 3 O -0.449 6.449 4 C -0.202 4.202 5 C -0.059 4.059 6 C -0.110 4.110 7 C 0.025 3.975 8 C -0.161 4.161 9 C -0.048 4.048 10 C -0.209 4.209 11 C -0.061 4.061 12 C -0.219 4.219 13 C 0.183 3.817 14 O -0.201 6.201 15 C -0.391 4.391 16 H 0.110 0.890 17 C 0.072 3.928 18 N -0.870 5.870 19 Si 0.894 3.106 20 H -0.270 1.270 21 H -0.278 1.278 22 H -0.258 1.258 23 C 0.072 3.928 24 F -0.113 7.113 25 C 0.123 3.877 26 F -0.110 7.110 27 H 0.099 0.901 28 H 0.088 0.912 29 H 0.088 0.912 30 H 0.147 0.853 31 H 0.146 0.854 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.114 0.886 35 H 0.138 0.862 36 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.399 0.903 -11.942 17.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.272 3.728 3 O -0.324 6.324 4 C -0.204 4.204 5 C -0.077 4.077 6 C -0.128 4.128 7 C 0.024 3.976 8 C -0.163 4.163 9 C -0.067 4.067 10 C -0.228 4.228 11 C -0.080 4.080 12 C -0.238 4.238 13 C 0.128 3.872 14 O -0.105 6.105 15 C -0.466 4.466 16 H 0.127 0.873 17 C -0.133 4.133 18 N -0.506 5.506 19 Si 0.719 3.281 20 H -0.196 1.196 21 H -0.203 1.203 22 H -0.182 1.182 23 C 0.051 3.949 24 F -0.091 7.091 25 C 0.102 3.898 26 F -0.088 7.088 27 H 0.118 0.882 28 H 0.107 0.893 29 H 0.107 0.893 30 H 0.165 0.835 31 H 0.164 0.836 32 H 0.136 0.864 33 H 0.131 0.869 34 H 0.132 0.868 35 H 0.155 0.845 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -11.989 1.803 -11.626 16.797 hybrid contribution 0.322 0.637 0.397 0.817 sum -11.667 2.440 -11.230 16.376 Atomic orbital electron populations 1.22199 0.93025 1.04978 1.04997 1.22247 0.91884 0.86980 0.71725 1.90616 1.72050 1.33976 1.35776 1.20437 0.91217 0.97001 1.11729 1.21001 1.00489 0.90158 0.96057 1.20931 0.92080 0.99034 1.00759 1.18873 0.93254 0.91149 0.94356 1.17561 1.06328 0.95598 0.96781 1.20651 0.97687 0.92930 0.95384 1.20579 1.04081 0.98196 0.99937 1.20946 0.96181 0.98074 0.92758 1.21246 1.05749 0.95743 1.01107 1.19019 0.91661 0.89150 0.87338 1.83546 1.65638 1.39370 1.21908 1.20782 1.29747 1.07484 0.88554 0.87289 1.24418 0.96204 0.99078 0.93640 1.69618 1.39139 1.38760 1.03117 0.86335 0.79790 0.82495 0.79464 1.19574 1.20342 1.18224 1.17709 0.78427 0.92340 1.06387 1.91573 1.26937 1.97021 1.93557 1.17842 0.89603 0.80772 1.01536 1.91580 1.79411 1.44895 1.92923 0.88241 0.89287 0.89287 0.83495 0.83598 0.86412 0.86902 0.86838 0.84471 0.90779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.51 9.74 36.00 0.35 -1.16 16 2 C 0.39 5.26 7.21 -30.86 -0.22 5.04 16 3 O -0.45 -7.78 16.07 5.53 0.09 -7.69 16 4 C -0.20 -2.94 5.88 -104.98 -0.62 -3.55 16 5 C -0.06 -0.66 9.29 -39.53 -0.37 -1.03 16 6 C -0.11 -1.44 9.65 -39.68 -0.38 -1.83 16 7 C 0.02 0.44 4.96 -104.77 -0.52 -0.08 16 8 C -0.16 -3.01 5.01 -104.73 -0.52 -3.53 16 9 C -0.05 -0.75 9.73 -39.25 -0.38 -1.13 16 10 C -0.21 -3.14 10.03 -39.59 -0.40 -3.53 16 11 C -0.06 -1.02 10.03 -39.54 -0.40 -1.41 16 12 C -0.22 -4.46 9.16 -39.44 -0.36 -4.82 16 13 C 0.18 4.02 6.44 -38.69 -0.25 3.77 16 14 O -0.20 -5.14 7.77 0.53 0.00 -5.13 16 15 C -0.39 -10.69 9.95 30.89 0.31 -10.38 16 16 H 0.11 3.01 5.44 -52.49 -0.29 2.73 16 17 C 0.07 1.98 5.49 -17.52 -0.10 1.88 16 18 N -0.87 -24.67 13.96 55.48 0.77 -23.90 16 19 Si 0.89 22.01 28.62 -169.99 -4.86 17.15 16 20 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.26 -6.60 7.11 56.52 0.40 -6.20 16 23 C 0.07 1.40 6.95 -39.07 -0.27 1.13 16 24 F -0.11 -2.49 16.55 2.25 0.04 -2.45 16 25 C 0.12 2.27 7.29 -38.84 -0.28 1.99 16 26 F -0.11 -2.22 15.45 2.25 0.03 -2.18 16 27 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.45 6.45 -51.93 -0.33 0.12 16 30 H 0.15 0.98 6.33 -52.49 -0.33 0.64 16 31 H 0.15 1.51 8.06 -52.48 -0.42 1.09 16 32 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 33 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 34 H 0.11 1.56 8.06 -52.48 -0.42 1.14 16 35 H 0.14 2.92 5.64 -52.48 -0.30 2.63 16 36 H 0.28 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 327.24 15.07 4.93 4.93 Total: -1.00 -32.25 327.24 -6.33 -38.57 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -2.92 Total: -0.65 kcal Atomic # 6 Polarization: -14.24 SS G_CDS: -4.41 Total: -18.65 kcal Atomic # 7 Polarization: -24.67 SS G_CDS: 0.77 Total: -23.90 kcal Atomic # 8 Polarization: -12.92 SS G_CDS: 0.09 Total: -12.82 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.07 Total: -4.64 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.86 Total: 17.15 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -32.25 -6.33 -38.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244704757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.198 kcal (2) G-P(sol) polarization free energy of solvation -32.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds