Wall clock time and date at job start Tue Mar 31 2020 12:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21311 * 119.99662 * 2 1 4 4 C 1.46768 * 120.00316 * 179.97438 * 2 1 3 5 5 C 1.40132 * 120.05595 * 0.02562 * 4 2 1 6 6 C 1.36420 * 120.14608 * 179.71846 * 5 4 2 7 7 C 1.39725 * 120.27461 * 0.51742 * 6 5 4 8 8 C 1.48080 * 119.93886 * 179.75982 * 7 6 5 9 9 C 1.39415 * 120.17354 * 64.72587 * 8 7 6 10 10 C 1.37953 * 119.93367 * 180.22903 * 9 8 7 11 11 C 1.38485 * 120.28938 * 359.49083 * 10 9 8 12 12 C 1.38094 * 120.35003 * 0.51238 * 11 10 9 13 13 C 1.38766 * 120.05701 * 359.74234 * 12 11 10 14 14 O 1.35626 * 120.14308 * 180.02562 * 13 12 11 15 15 C 1.34795 * 117.00378 * 354.40366 * 14 13 12 16 16 H 1.08000 * 120.00021 * 5.07366 * 15 14 13 17 17 C 1.38677 * 120.00438 * 185.06726 * 15 14 13 18 18 N 1.31538 * 119.99969 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 119.99660 * 0.02562 * 17 15 14 20 20 H 1.48498 * 109.46859 * 90.00027 * 19 17 15 21 21 H 1.48501 * 109.47081 * 209.99834 * 19 17 15 22 22 H 1.48500 * 109.47320 * 329.99749 * 19 17 15 23 23 C 1.39661 * 120.11847 * 359.48209 * 7 6 5 24 24 F 1.35099 * 120.07737 * 180.23206 * 23 7 6 25 25 C 1.38186 * 119.84655 * 0.25682 * 23 7 6 26 26 F 1.35098 * 120.13263 * 179.97438 * 25 23 7 27 27 H 1.09000 * 109.47221 * 270.00187 * 1 2 3 28 28 H 1.09000 * 109.47390 * 30.00446 * 1 2 3 29 29 H 1.09005 * 109.46898 * 150.00489 * 1 2 3 30 30 H 1.07995 * 119.92766 * 359.97438 * 5 4 2 31 31 H 1.08005 * 119.86148 * 180.27982 * 6 5 4 32 32 H 1.08001 * 120.02839 * 359.95545 * 9 8 7 33 33 H 1.08001 * 119.85475 * 179.74420 * 10 9 8 34 34 H 1.08004 * 119.82823 * 180.25432 * 11 10 9 35 35 H 1.08004 * 119.97195 * 179.76810 * 12 11 10 36 36 H 0.97000 * 120.00162 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0506 0.0000 4 6 2.2409 -1.2710 0.0006 5 6 1.5415 -2.4853 0.0006 6 6 2.2218 -3.6678 -0.0047 7 6 3.6190 -3.6766 0.0008 8 6 4.3499 -4.9645 0.0004 9 6 4.2525 -5.8251 -1.0921 10 6 4.9317 -7.0258 -1.0852 11 6 5.7195 -7.3765 -0.0015 12 6 5.8244 -6.5330 1.0868 13 6 5.1432 -5.3241 1.0975 14 8 5.2454 -4.4942 2.1653 15 6 5.9301 -4.9515 3.2325 16 1 6.4365 -5.9040 3.1816 17 6 5.9844 -4.1988 4.3960 18 7 6.6529 -4.6449 5.4373 19 14 5.1080 -2.5515 4.4844 20 1 3.7213 -2.7543 4.9753 21 1 5.8363 -1.6527 5.4157 22 1 5.0699 -1.9378 3.1327 23 6 4.3275 -2.4730 0.0008 24 9 5.6784 -2.4826 0.0013 25 6 3.6434 -1.2724 0.0007 26 9 4.3229 -0.1047 0.0012 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5139 29 1 -0.3633 -0.8901 -0.5138 30 1 0.4615 -2.4851 0.0006 31 1 1.6781 -4.6010 -0.0092 32 1 3.6423 -5.5540 -1.9410 33 1 4.8521 -7.6934 -1.9304 34 1 6.2513 -8.3165 -0.0058 35 1 6.4375 -6.8143 1.9303 36 1 6.6906 -4.1187 6.2513 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001244704757.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:21 Heat of formation + Delta-G solvation = -116.276650 kcal Electronic energy + Delta-G solvation = -26333.156292 eV Core-core repulsion = 22190.722072 eV Total energy + Delta-G solvation = -4142.434221 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 2.29 seconds Orbital eigenvalues (eV) -50.63124 -49.70247 -41.26941 -40.70464 -39.26271 -38.14859 -34.56830 -33.99873 -32.02982 -31.21001 -30.87289 -29.51460 -27.33170 -25.60849 -23.88413 -23.13002 -22.60901 -21.31444 -19.89827 -19.42804 -18.82633 -18.22726 -18.13766 -17.58652 -16.89860 -16.64042 -16.54494 -16.21178 -15.94002 -15.83327 -15.82200 -15.64661 -15.46097 -15.36392 -14.92150 -14.37141 -14.19712 -14.10200 -13.42191 -13.27472 -13.21069 -13.10623 -12.95996 -12.75437 -12.62041 -12.57548 -12.35954 -12.08900 -11.39596 -10.99687 -10.91600 -10.30405 -9.94228 -9.63848 -9.09070 -8.59402 -6.28364 -0.83268 -0.16013 0.39712 0.65662 1.17123 1.19116 1.20280 1.37105 2.15178 2.30403 2.51168 2.69778 2.92701 2.98741 3.06429 3.28190 3.40574 3.62086 3.81443 4.03305 4.13628 4.22307 4.38882 4.44504 4.57594 4.62478 4.72236 4.72981 4.84380 4.89333 4.93141 5.04714 5.15487 5.25710 5.34941 5.49251 5.60415 5.66601 5.73075 5.84587 6.18053 6.40454 6.76639 7.52140 8.52384 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.011291 B = 0.006186 C = 0.004590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2479.267876 B = 4525.016764 C = 6098.522498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.392 3.608 3 O -0.501 6.501 4 C -0.202 4.202 5 C -0.025 4.025 6 C -0.096 4.096 7 C 0.002 3.998 8 C -0.156 4.156 9 C -0.043 4.043 10 C -0.180 4.180 11 C -0.062 4.062 12 C -0.243 4.243 13 C 0.141 3.859 14 O -0.235 6.235 15 C -0.392 4.392 16 H 0.088 0.912 17 C 0.024 3.976 18 N -0.915 5.915 19 Si 0.946 3.054 20 H -0.252 1.252 21 H -0.269 1.269 22 H -0.283 1.283 23 C 0.033 3.967 24 F -0.145 7.145 25 C 0.084 3.916 26 F -0.135 7.135 27 H 0.120 0.880 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.214 0.786 31 H 0.187 0.813 32 H 0.164 0.836 33 H 0.161 0.839 34 H 0.144 0.856 35 H 0.110 0.890 36 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.305 -0.531 -14.987 22.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C 0.272 3.728 3 O -0.380 6.380 4 C -0.204 4.204 5 C -0.043 4.043 6 C -0.113 4.113 7 C 0.001 3.999 8 C -0.157 4.157 9 C -0.061 4.061 10 C -0.198 4.198 11 C -0.080 4.080 12 C -0.263 4.263 13 C 0.091 3.909 14 O -0.141 6.141 15 C -0.468 4.468 16 H 0.106 0.894 17 C -0.175 4.175 18 N -0.555 5.555 19 Si 0.770 3.230 20 H -0.177 1.177 21 H -0.194 1.194 22 H -0.208 1.208 23 C 0.013 3.987 24 F -0.123 7.123 25 C 0.063 3.937 26 F -0.113 7.113 27 H 0.138 0.862 28 H 0.115 0.885 29 H 0.147 0.853 30 H 0.230 0.770 31 H 0.205 0.795 32 H 0.181 0.819 33 H 0.179 0.821 34 H 0.162 0.838 35 H 0.128 0.872 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -16.924 0.331 -14.717 22.430 hybrid contribution 1.720 0.888 0.938 2.151 sum -15.204 1.218 -13.779 20.555 Atomic orbital electron populations 1.22290 0.87532 1.07421 1.06879 1.23189 0.94518 0.85440 0.69606 1.90612 1.73644 1.35488 1.38213 1.21030 0.89590 0.99576 1.10248 1.21711 1.03240 0.87644 0.91659 1.21458 0.89994 1.01559 0.98310 1.19127 0.95233 0.89585 0.95957 1.17996 1.05051 0.96483 0.96194 1.21236 0.97467 0.92194 0.95182 1.21206 1.00668 0.98106 0.99863 1.21331 0.96366 0.98465 0.91860 1.21292 1.06245 0.96600 1.02131 1.19660 0.93512 0.89952 0.87753 1.83515 1.67442 1.40673 1.22476 1.20710 1.29712 1.06754 0.89672 0.89413 1.24992 0.97319 1.01612 0.93619 1.69683 1.41774 1.40237 1.03855 0.85572 0.79971 0.79456 0.78007 1.17663 1.19425 1.20809 1.18204 0.77448 0.94007 1.09085 1.91472 1.29399 1.97264 1.94198 1.18394 0.91497 0.79759 1.04027 1.91502 1.80260 1.46063 1.93507 0.86183 0.88493 0.85296 0.76961 0.79542 0.81879 0.82096 0.83823 0.87186 0.90533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.84 9.74 71.24 0.69 -1.14 16 2 C 0.39 9.49 7.21 27.92 0.20 9.69 16 3 O -0.50 -17.39 16.07 -3.12 -0.05 -17.44 16 4 C -0.20 -5.42 5.88 -20.10 -0.12 -5.54 16 5 C -0.03 -0.43 9.29 22.31 0.21 -0.22 16 6 C -0.10 -2.05 9.65 22.20 0.21 -1.83 16 7 C 0.00 0.07 4.96 -19.96 -0.10 -0.03 16 8 C -0.16 -5.60 5.01 -19.93 -0.10 -5.70 16 9 C -0.04 -1.14 9.73 22.49 0.22 -0.92 16 10 C -0.18 -4.48 10.03 22.26 0.22 -4.26 16 11 C -0.06 -1.92 10.03 22.29 0.22 -1.70 16 12 C -0.24 -10.20 9.16 22.36 0.20 -10.00 16 13 C 0.14 6.42 6.44 22.84 0.15 6.57 16 14 O -0.23 -12.71 7.77 -21.02 -0.16 -12.87 16 15 C -0.39 -23.10 9.95 67.92 0.68 -22.42 16 16 H 0.09 5.34 5.44 -2.91 -0.02 5.32 16 17 C 0.02 1.42 5.49 84.84 0.47 1.88 16 18 N -0.91 -55.07 13.96 21.62 0.30 -54.77 16 19 Si 0.95 47.89 28.62 68.60 1.96 49.86 16 20 H -0.25 -11.81 7.11 99.48 0.71 -11.10 16 21 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 22 H -0.28 -15.29 7.11 99.48 0.71 -14.59 16 23 C 0.03 1.32 6.95 22.60 0.16 1.48 16 24 F -0.14 -6.94 16.55 44.97 0.74 -6.20 16 25 C 0.08 3.17 7.29 22.75 0.17 3.34 16 26 F -0.13 -5.87 15.45 44.97 0.69 -5.17 16 27 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 28 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 29 H 0.13 0.24 6.45 -2.38 -0.02 0.23 16 30 H 0.21 0.81 6.33 -2.91 -0.02 0.79 16 31 H 0.19 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.16 2.88 8.06 -2.91 -0.02 2.86 16 33 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 34 H 0.14 3.51 8.06 -2.91 -0.02 3.49 16 35 H 0.11 5.12 5.64 -2.91 -0.02 5.11 16 36 H 0.28 15.84 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -83.81 327.24 8.12 -75.69 By element: Atomic # 1 Polarization: 0.55 SS G_CDS: 1.15 Total: 1.70 kcal Atomic # 6 Polarization: -34.27 SS G_CDS: 3.48 Total: -30.79 kcal Atomic # 7 Polarization: -55.07 SS G_CDS: 0.30 Total: -54.77 kcal Atomic # 8 Polarization: -30.10 SS G_CDS: -0.21 Total: -30.32 kcal Atomic # 9 Polarization: -12.81 SS G_CDS: 1.44 Total: -11.37 kcal Atomic # 14 Polarization: 47.89 SS G_CDS: 1.96 Total: 49.86 kcal Total: -83.81 8.12 -75.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001244704757.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.589 kcal (2) G-P(sol) polarization free energy of solvation -83.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.29 seconds