Wall clock time and date at job start Tue Mar 31 2020 12:48:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39754 * 120.10412 * 262.48123 * 3 2 1 5 5 C 1.38035 * 120.17740 * 179.97438 * 4 3 2 6 6 C 1.38108 * 120.38084 * 0.05004 * 5 4 3 7 7 C 1.39610 * 120.19990 * 0.22870 * 6 5 4 8 8 C 1.47881 * 120.08652 * 179.74454 * 7 6 5 9 9 N 1.31586 * 119.44433 * 130.27874 * 8 7 6 10 10 C 1.33667 * 121.74240 * 179.71437 * 9 8 7 11 11 C 1.40476 * 120.98009 * 180.26103 * 10 9 8 12 12 C 1.36251 * 119.70419 * 180.29255 * 11 10 9 13 13 C 1.39162 * 121.75245 * 359.97159 * 12 11 10 14 14 C 1.36126 * 121.46621 * 0.04887 * 13 12 11 15 15 C 1.40779 * 119.47330 * 359.95696 * 14 13 12 16 16 C 1.40014 * 121.40952 * 180.02562 * 15 14 13 17 17 C 1.40380 * 117.96916 * 180.02562 * 16 15 14 18 18 C 1.40836 * 120.41093 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99833 * 150.57826 * 18 17 16 20 20 C 1.40090 * 120.00101 * 330.58224 * 18 17 16 21 21 N 1.30765 * 119.99964 * 162.89356 * 20 18 17 22 22 Si 1.86797 * 120.00071 * 342.88558 * 20 18 17 23 23 H 1.48496 * 109.46921 * 90.42808 * 22 20 18 24 24 H 1.48496 * 109.47072 * 210.42535 * 22 20 18 25 25 H 1.48497 * 109.47115 * 330.42725 * 22 20 18 26 26 C 1.39666 * 119.82058 * 359.47597 * 7 6 5 27 27 F 1.35106 * 120.18646 * 180.27578 * 26 7 6 28 28 H 1.07999 * 119.91182 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.81377 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.89732 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.15106 * 0.31013 * 11 10 9 32 32 H 1.08004 * 119.11903 * 179.97438 * 12 11 10 33 33 H 1.08006 * 119.26404 * 180.02562 * 13 12 11 34 34 H 1.08005 * 120.26145 * 179.97438 * 14 13 12 35 35 H 1.07999 * 121.01513 * 359.97438 * 16 15 14 36 36 H 0.96994 * 119.99961 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.1592 1.1986 5 6 4.6492 0.1595 1.2005 6 6 5.3493 0.0045 0.0201 7 6 4.6652 -0.1492 -1.1872 8 6 5.4173 -0.3093 -2.4503 9 7 5.1089 -1.2944 -3.2664 10 6 5.7546 -1.4784 -4.4222 11 6 5.4085 -2.5324 -5.2840 12 6 6.0880 -2.6995 -6.4531 13 6 7.1253 -1.8496 -6.8251 14 6 7.5102 -0.8100 -6.0351 15 6 6.8465 -0.5851 -4.8142 16 6 7.2086 0.4722 -3.9707 17 6 6.4985 0.6294 -2.7700 18 6 6.8202 1.6752 -1.8832 19 1 6.0556 2.1006 -1.2500 20 6 8.1318 2.1636 -1.8225 21 7 8.3722 3.3246 -1.2711 22 14 9.5372 1.1562 -2.5291 23 1 9.7410 1.5220 -3.9538 24 1 10.7792 1.4346 -1.7641 25 1 9.2088 -0.2887 -2.4310 26 6 3.2686 -0.1570 -1.1979 27 9 2.5990 -0.3109 -2.3613 28 1 2.7291 0.2817 2.1260 29 1 5.1849 0.2820 2.1302 30 1 6.4293 0.0064 0.0305 31 1 4.6071 -3.2070 -5.0213 32 1 5.8143 -3.5131 -7.1084 33 1 7.6366 -2.0190 -7.7613 34 1 8.3182 -0.1627 -6.3428 35 1 8.0103 1.1457 -4.2354 36 1 9.2804 3.6626 -1.2287 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245068523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:09 Heat of formation + Delta-G solvation = 51.013245 kcal Electronic energy + Delta-G solvation = -24898.437889 eV Core-core repulsion = 21226.319879 eV Total energy + Delta-G solvation = -3672.118011 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 3.45 seconds Orbital eigenvalues (eV) -48.59993 -39.53786 -38.72692 -36.60611 -35.93880 -34.33328 -32.38748 -31.89292 -30.68793 -29.94059 -28.57444 -25.72721 -24.10366 -23.71228 -21.95748 -21.51531 -20.91985 -19.02119 -18.15311 -17.08787 -16.62963 -16.50307 -16.23421 -15.54715 -15.33480 -14.82421 -14.62426 -13.86764 -13.78396 -13.56090 -13.45453 -13.30500 -13.19221 -13.02566 -12.88655 -12.59157 -12.45878 -12.22089 -11.88865 -11.68747 -11.44114 -11.26052 -11.17219 -10.86395 -10.74776 -10.45238 -10.16756 -9.81804 -9.27897 -8.92830 -8.61770 -8.44853 -7.68122 -7.45447 -7.41410 -4.87543 0.78762 1.01687 1.50015 1.77011 2.69857 2.81699 2.91368 2.95817 3.01638 3.15015 3.54065 3.65917 3.86373 3.94154 4.29998 4.41755 4.71511 5.00359 5.08833 5.18260 5.36683 5.38217 5.48202 5.56764 5.71567 5.87353 5.94892 5.98714 6.06446 6.13983 6.26938 6.40964 6.43744 6.53818 6.69973 6.74289 6.87458 6.95942 7.03050 7.13922 7.30793 7.43557 7.52817 7.57398 7.82843 8.06766 8.24784 8.85813 9.55541 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010732 B = 0.006024 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.332004 B = 4646.809622 C = 6821.088508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.423 5.423 2 C 0.265 3.735 3 C -0.080 4.080 4 C -0.048 4.048 5 C -0.137 4.137 6 C -0.022 4.022 7 C -0.036 4.036 8 C 0.120 3.880 9 N -0.436 5.436 10 C 0.021 3.979 11 C -0.050 4.050 12 C -0.181 4.181 13 C -0.101 4.101 14 C -0.148 4.148 15 C -0.015 4.015 16 C -0.261 4.261 17 C 0.063 3.937 18 C -0.405 4.405 19 H 0.106 0.894 20 C 0.083 3.917 21 N -0.773 5.773 22 Si 0.915 3.085 23 H -0.264 1.264 24 H -0.286 1.286 25 H -0.243 1.243 26 C 0.166 3.834 27 F -0.119 7.119 28 H 0.137 0.863 29 H 0.140 0.860 30 H 0.150 0.850 31 H 0.117 0.883 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.112 0.888 35 H 0.119 0.881 36 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.954 -4.431 2.601 5.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.099 5.099 2 C -0.050 4.050 3 C -0.085 4.085 4 C -0.069 4.069 5 C -0.155 4.155 6 C -0.042 4.042 7 C -0.037 4.037 8 C -0.038 4.038 9 N -0.141 5.141 10 C -0.100 4.100 11 C -0.069 4.069 12 C -0.201 4.201 13 C -0.119 4.119 14 C -0.167 4.167 15 C -0.017 4.017 16 C -0.285 4.285 17 C 0.057 3.943 18 C -0.431 4.431 19 H 0.124 0.876 20 C -0.141 4.141 21 N -0.393 5.393 22 Si 0.740 3.260 23 H -0.190 1.190 24 H -0.214 1.214 25 H -0.166 1.166 26 C 0.143 3.857 27 F -0.097 7.097 28 H 0.155 0.845 29 H 0.158 0.842 30 H 0.168 0.832 31 H 0.135 0.865 32 H 0.127 0.873 33 H 0.125 0.875 34 H 0.130 0.870 35 H 0.137 0.863 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.351 -4.844 2.750 5.732 hybrid contribution 1.698 0.448 -0.899 1.973 sum 0.348 -4.396 1.851 4.783 Atomic orbital electron populations 1.81186 1.11882 1.09609 1.07195 1.25401 0.92368 0.93404 0.93801 1.15834 0.84657 1.13912 0.94067 1.21010 0.94339 0.96034 0.95500 1.21023 0.93157 1.02480 0.98829 1.21571 1.01751 0.91116 0.89771 1.18399 0.89425 1.02163 0.93756 1.20624 0.97380 0.93218 0.92534 1.67433 1.25209 1.18837 1.02651 1.19253 0.97812 0.98982 0.93983 1.20552 0.97979 0.95396 0.92923 1.20319 0.99746 1.01842 0.98194 1.20551 0.97160 0.95355 0.98822 1.20851 1.01171 0.99405 0.95248 1.19517 0.93961 0.94114 0.94089 1.21151 1.08105 1.03139 0.96153 1.19198 0.90910 0.91605 0.92545 1.19618 0.96030 1.10237 1.17238 0.87613 1.26309 1.01063 0.94195 0.92568 1.69620 1.24644 1.14835 1.30228 0.86229 0.78132 0.82619 0.78988 1.18953 1.21365 1.16614 1.17742 0.89303 0.98430 0.80275 1.91549 1.80003 1.92034 1.46108 0.84499 0.84245 0.83221 0.86479 0.87299 0.87464 0.86955 0.86322 0.89420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.42 -7.20 18.54 41.84 0.78 -6.42 16 2 C 0.27 4.14 14.97 -22.47 -0.34 3.80 16 3 C -0.08 -1.18 5.73 -106.87 -0.61 -1.79 16 4 C -0.05 -0.55 9.75 -39.09 -0.38 -0.93 16 5 C -0.14 -1.59 10.01 -39.70 -0.40 -1.99 16 6 C -0.02 -0.34 8.03 -39.12 -0.31 -0.65 16 7 C -0.04 -0.65 5.10 -104.90 -0.53 -1.18 16 8 C 0.12 2.58 6.26 -80.60 -0.50 2.08 16 9 N -0.44 -9.67 9.68 -4.83 -0.05 -9.72 16 10 C 0.02 0.45 6.74 -82.93 -0.56 -0.11 16 11 C -0.05 -0.94 9.98 -39.45 -0.39 -1.33 16 12 C -0.18 -3.02 9.90 -39.95 -0.40 -3.41 16 13 C -0.10 -1.68 9.91 -40.00 -0.40 -2.08 16 14 C -0.15 -2.79 9.80 -39.38 -0.39 -3.18 16 15 C -0.01 -0.32 5.87 -104.98 -0.62 -0.93 16 16 C -0.26 -5.86 7.11 -38.11 -0.27 -6.13 16 17 C 0.06 1.41 5.26 -104.69 -0.55 0.86 16 18 C -0.40 -8.95 7.56 -37.91 -0.29 -9.24 16 19 H 0.11 2.39 6.98 -52.48 -0.37 2.02 16 20 C 0.08 1.80 5.43 -17.31 -0.09 1.71 16 21 N -0.77 -17.07 13.92 55.56 0.77 -16.30 16 22 Si 0.91 18.02 24.53 -169.99 -4.17 13.85 16 23 H -0.26 -5.18 6.47 56.52 0.37 -4.81 16 24 H -0.29 -5.40 7.11 56.52 0.40 -5.00 16 25 H -0.24 -5.01 7.00 56.52 0.40 -4.61 16 26 C 0.17 2.91 7.22 -38.51 -0.28 2.63 16 27 F -0.12 -2.34 15.97 2.25 0.04 -2.31 16 28 H 0.14 1.15 8.06 -52.49 -0.42 0.73 16 29 H 0.14 1.19 8.06 -52.49 -0.42 0.76 16 30 H 0.15 2.28 7.26 -52.49 -0.38 1.90 16 31 H 0.12 2.01 8.06 -52.49 -0.42 1.59 16 32 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 33 H 0.11 1.44 8.06 -52.48 -0.42 1.02 16 34 H 0.11 1.92 8.06 -52.48 -0.42 1.50 16 35 H 0.12 2.61 4.51 -52.49 -0.24 2.37 16 36 H 0.29 5.89 8.29 -40.82 -0.34 5.55 16 LS Contribution 323.25 15.07 4.87 4.87 Total: -1.00 -26.06 323.25 -7.77 -33.83 By element: Atomic # 1 Polarization: 6.78 SS G_CDS: -2.70 Total: 4.08 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: -7.31 Total: -21.88 kcal Atomic # 7 Polarization: -33.95 SS G_CDS: 1.50 Total: -32.44 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.04 Total: -2.31 kcal Atomic # 14 Polarization: 18.02 SS G_CDS: -4.17 Total: 13.85 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.06 -7.77 -33.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245068523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.844 kcal (2) G-P(sol) polarization free energy of solvation -26.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.45 seconds