Wall clock time and date at job start Tue Mar 31 2020 12:48:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39754 * 120.10412 * 262.48123 * 3 2 1 5 5 C 1.38035 * 120.17740 * 179.97438 * 4 3 2 6 6 C 1.38108 * 120.38084 * 0.05004 * 5 4 3 7 7 C 1.39610 * 120.19990 * 0.22870 * 6 5 4 8 8 C 1.47881 * 120.08652 * 179.74454 * 7 6 5 9 9 N 1.31586 * 119.44433 * 130.27874 * 8 7 6 10 10 C 1.33667 * 121.74240 * 179.71437 * 9 8 7 11 11 C 1.40476 * 120.98009 * 180.26103 * 10 9 8 12 12 C 1.36251 * 119.70419 * 180.29255 * 11 10 9 13 13 C 1.39162 * 121.75245 * 359.97159 * 12 11 10 14 14 C 1.36126 * 121.46621 * 0.04887 * 13 12 11 15 15 C 1.40779 * 119.47330 * 359.95696 * 14 13 12 16 16 C 1.40014 * 121.40952 * 180.02562 * 15 14 13 17 17 C 1.40380 * 117.96916 * 180.02562 * 16 15 14 18 18 C 1.40836 * 120.41093 * 179.97438 * 17 16 15 19 19 H 1.08005 * 119.99833 * 150.57826 * 18 17 16 20 20 C 1.40090 * 120.00101 * 330.58224 * 18 17 16 21 21 N 1.30765 * 119.99964 * 162.89356 * 20 18 17 22 22 Si 1.86797 * 120.00071 * 342.88558 * 20 18 17 23 23 H 1.48496 * 109.46921 * 90.42808 * 22 20 18 24 24 H 1.48496 * 109.47072 * 210.42535 * 22 20 18 25 25 H 1.48497 * 109.47115 * 330.42725 * 22 20 18 26 26 C 1.39666 * 119.82058 * 359.47597 * 7 6 5 27 27 F 1.35106 * 120.18646 * 180.27578 * 26 7 6 28 28 H 1.07999 * 119.91182 * 359.97438 * 4 3 2 29 29 H 1.08000 * 119.81377 * 180.02562 * 5 4 3 30 30 H 1.08001 * 119.89732 * 179.97438 * 6 5 4 31 31 H 1.07999 * 120.15106 * 0.31013 * 11 10 9 32 32 H 1.08004 * 119.11903 * 179.97438 * 12 11 10 33 33 H 1.08006 * 119.26404 * 180.02562 * 13 12 11 34 34 H 1.08005 * 120.26145 * 179.97438 * 14 13 12 35 35 H 1.07999 * 121.01513 * 359.97438 * 16 15 14 36 36 H 0.96994 * 119.99961 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2689 0.1592 1.1986 5 6 4.6492 0.1595 1.2005 6 6 5.3493 0.0045 0.0201 7 6 4.6652 -0.1492 -1.1872 8 6 5.4173 -0.3093 -2.4503 9 7 5.1089 -1.2944 -3.2664 10 6 5.7546 -1.4784 -4.4222 11 6 5.4085 -2.5324 -5.2840 12 6 6.0880 -2.6995 -6.4531 13 6 7.1253 -1.8496 -6.8251 14 6 7.5102 -0.8100 -6.0351 15 6 6.8465 -0.5851 -4.8142 16 6 7.2086 0.4722 -3.9707 17 6 6.4985 0.6294 -2.7700 18 6 6.8202 1.6752 -1.8832 19 1 6.0556 2.1006 -1.2500 20 6 8.1318 2.1636 -1.8225 21 7 8.3722 3.3246 -1.2711 22 14 9.5372 1.1562 -2.5291 23 1 9.7410 1.5220 -3.9538 24 1 10.7792 1.4346 -1.7641 25 1 9.2088 -0.2887 -2.4310 26 6 3.2686 -0.1570 -1.1979 27 9 2.5990 -0.3109 -2.3613 28 1 2.7291 0.2817 2.1260 29 1 5.1849 0.2820 2.1302 30 1 6.4293 0.0064 0.0305 31 1 4.6071 -3.2070 -5.0213 32 1 5.8143 -3.5131 -7.1084 33 1 7.6366 -2.0190 -7.7613 34 1 8.3182 -0.1627 -6.3428 35 1 8.0103 1.1457 -4.2354 36 1 9.2804 3.6626 -1.2287 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245068523.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:48:08 Heat of formation + Delta-G solvation = 39.045431 kcal Electronic energy + Delta-G solvation = -24898.956853 eV Core-core repulsion = 21226.319879 eV Total energy + Delta-G solvation = -3672.636974 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 318.086 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -50.00856 -41.00591 -39.98978 -37.98659 -37.30418 -35.95275 -33.98265 -33.19667 -31.87144 -31.46033 -29.98056 -27.30158 -25.43932 -25.00677 -23.51786 -22.81747 -22.43932 -20.36420 -19.66169 -18.38228 -18.07649 -17.96929 -17.69151 -16.93468 -16.71494 -16.33218 -15.73808 -15.35840 -15.28722 -14.89406 -14.85046 -14.78084 -14.53990 -14.47892 -14.26672 -14.02033 -13.84478 -13.78404 -13.14359 -12.97173 -12.83945 -12.74556 -12.46826 -12.28144 -12.18811 -11.97488 -11.72155 -11.45898 -10.86724 -10.27898 -9.97788 -9.79638 -9.23609 -9.05928 -8.94063 -6.54592 -0.47721 -0.30826 0.07228 0.35536 1.22251 1.33516 1.35086 1.44593 1.51959 1.81042 2.05937 2.07522 2.65794 2.72034 2.82862 3.09006 3.32168 3.51032 3.85681 3.92475 3.95993 4.15233 4.20296 4.34384 4.37197 4.48652 4.55944 4.60913 4.77198 4.88597 4.95210 5.03190 5.18927 5.21171 5.30094 5.37658 5.41643 5.53793 5.69493 5.75192 5.78004 5.83468 6.09440 6.16334 6.29228 6.45802 6.59058 7.25272 7.96002 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.010732 B = 0.006024 C = 0.004104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2608.332004 B = 4646.809622 C = 6821.088508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C 0.280 3.720 3 C -0.080 4.080 4 C -0.020 4.020 5 C -0.115 4.115 6 C -0.027 4.027 7 C -0.065 4.065 8 C 0.113 3.887 9 N -0.456 5.456 10 C -0.005 4.005 11 C -0.071 4.071 12 C -0.161 4.161 13 C -0.090 4.090 14 C -0.164 4.164 15 C -0.041 4.041 16 C -0.281 4.281 17 C 0.047 3.953 18 C -0.417 4.417 19 H 0.093 0.907 20 C 0.066 3.934 21 N -0.799 5.799 22 Si 0.953 3.047 23 H -0.265 1.265 24 H -0.269 1.269 25 H -0.263 1.263 26 C 0.142 3.858 27 F -0.142 7.142 28 H 0.183 0.817 29 H 0.185 0.815 30 H 0.143 0.857 31 H 0.128 0.872 32 H 0.150 0.850 33 H 0.151 0.849 34 H 0.126 0.874 35 H 0.117 0.883 36 H 0.304 0.696 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.385 -5.570 3.015 6.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.126 5.126 2 C -0.034 4.034 3 C -0.084 4.084 4 C -0.041 4.041 5 C -0.133 4.133 6 C -0.047 4.047 7 C -0.067 4.067 8 C -0.045 4.045 9 N -0.162 5.162 10 C -0.125 4.125 11 C -0.089 4.089 12 C -0.181 4.181 13 C -0.108 4.108 14 C -0.183 4.183 15 C -0.043 4.043 16 C -0.306 4.306 17 C 0.042 3.958 18 C -0.444 4.444 19 H 0.111 0.889 20 C -0.156 4.156 21 N -0.421 5.421 22 Si 0.778 3.222 23 H -0.191 1.191 24 H -0.195 1.195 25 H -0.187 1.187 26 C 0.119 3.881 27 F -0.120 7.120 28 H 0.201 0.799 29 H 0.202 0.798 30 H 0.161 0.839 31 H 0.146 0.854 32 H 0.168 0.832 33 H 0.168 0.832 34 H 0.144 0.856 35 H 0.134 0.866 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.913 -5.976 3.165 6.824 hybrid contribution 1.504 0.653 -1.125 1.989 sum 0.591 -5.323 2.039 5.731 Atomic orbital electron populations 1.81199 1.12628 1.10657 1.08066 1.25462 0.92371 0.92582 0.92983 1.15932 0.84136 1.14218 0.94134 1.21549 0.94322 0.92441 0.95752 1.21473 0.93263 0.99606 0.98935 1.21688 1.01706 0.91176 0.90142 1.18444 0.89763 1.04876 0.93601 1.21095 0.97213 0.92569 0.93632 1.67521 1.25878 1.19448 1.03320 1.19827 0.98103 1.00023 0.94578 1.20829 0.99189 0.95247 0.93671 1.20837 0.98084 1.01952 0.97246 1.21044 0.96443 0.93621 0.99650 1.21122 1.01692 1.00776 0.94662 1.19836 0.94759 0.94329 0.95416 1.21271 1.08616 1.03923 0.96751 1.19407 0.91643 0.91999 0.92751 1.19476 0.96189 1.10928 1.17855 0.88896 1.26622 1.01838 0.94522 0.92574 1.69610 1.25571 1.15446 1.31523 0.85653 0.77332 0.80496 0.78708 1.19121 1.19543 1.18742 1.17965 0.89288 1.00341 0.80541 1.91479 1.80346 1.92561 1.47628 0.79942 0.79816 0.83891 0.85377 0.83208 0.83182 0.85613 0.86595 0.88505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.45 -14.99 18.54 19.00 0.35 -14.64 16 2 C 0.28 8.48 14.97 88.33 1.32 9.80 16 3 C -0.08 -2.24 5.73 -21.32 -0.12 -2.36 16 4 C -0.02 -0.40 9.75 22.59 0.22 -0.18 16 5 C -0.12 -2.32 10.01 22.19 0.22 -2.10 16 6 C -0.03 -0.82 8.03 22.57 0.18 -0.64 16 7 C -0.06 -2.45 5.10 -20.05 -0.10 -2.55 16 8 C 0.11 5.10 6.26 43.95 0.27 5.38 16 9 N -0.46 -21.15 9.68 -169.20 -1.64 -22.79 16 10 C 0.00 -0.21 6.74 41.54 0.28 0.07 16 11 C -0.07 -2.62 9.98 22.35 0.22 -2.39 16 12 C -0.16 -4.88 9.90 22.03 0.22 -4.67 16 13 C -0.09 -2.71 9.91 22.00 0.22 -2.49 16 14 C -0.16 -6.03 9.80 22.40 0.22 -5.81 16 15 C -0.04 -1.84 5.87 -20.10 -0.12 -1.96 16 16 C -0.28 -13.15 7.11 23.22 0.17 -12.98 16 17 C 0.05 2.24 5.26 -19.91 -0.10 2.13 16 18 C -0.42 -19.31 7.56 23.36 0.18 -19.13 16 19 H 0.09 4.41 6.98 -2.91 -0.02 4.39 16 20 C 0.07 2.95 5.43 85.30 0.46 3.42 16 21 N -0.80 -35.88 13.92 21.85 0.30 -35.58 16 22 Si 0.95 37.76 24.53 68.60 1.68 39.44 16 23 H -0.27 -10.43 6.47 99.48 0.64 -9.79 16 24 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 25 H -0.26 -11.17 7.00 99.48 0.70 -10.47 16 26 C 0.14 5.09 7.22 22.96 0.17 5.26 16 27 F -0.14 -5.89 15.97 44.97 0.72 -5.17 16 28 H 0.18 2.01 8.06 -2.91 -0.02 1.99 16 29 H 0.18 2.17 8.06 -2.91 -0.02 2.14 16 30 H 0.14 4.45 7.26 -2.91 -0.02 4.43 16 31 H 0.13 4.33 8.06 -2.91 -0.02 4.30 16 32 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 33 H 0.15 3.27 8.06 -2.91 -0.02 3.24 16 34 H 0.13 4.17 8.06 -2.91 -0.02 4.15 16 35 H 0.12 5.31 4.51 -2.91 -0.01 5.29 16 36 H 0.30 12.20 8.29 -92.71 -0.77 11.43 16 Total: -1.00 -60.98 323.25 6.41 -54.57 By element: Atomic # 1 Polarization: 14.29 SS G_CDS: 1.08 Total: 15.37 kcal Atomic # 6 Polarization: -35.12 SS G_CDS: 3.90 Total: -31.21 kcal Atomic # 7 Polarization: -72.02 SS G_CDS: -0.98 Total: -73.00 kcal Atomic # 9 Polarization: -5.89 SS G_CDS: 0.72 Total: -5.17 kcal Atomic # 14 Polarization: 37.76 SS G_CDS: 1.68 Total: 39.44 kcal Total: -60.98 6.41 -54.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245068523.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.616 kcal (2) G-P(sol) polarization free energy of solvation -60.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.570 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds