Wall clock time and date at job start Tue Mar 31 2020 12:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21275 * 119.99726 * 2 1 4 4 C 1.46996 * 120.00253 * 180.02562 * 2 1 3 5 5 C 1.40025 * 120.13373 * 5.26695 * 4 2 1 6 6 C 1.37854 * 120.10414 * 179.97438 * 5 4 2 7 7 C 1.38287 * 120.39157 * 0.04349 * 6 5 4 8 8 C 1.39366 * 120.27154 * 0.02562 * 7 6 5 9 9 C 1.48274 * 120.06029 * 179.97438 * 8 7 6 10 10 C 1.39305 * 120.13377 * 65.20717 * 9 8 7 11 11 C 1.37972 * 119.96527 * 180.23525 * 10 9 8 12 12 C 1.38674 * 120.24718 * 359.80970 * 11 10 9 13 13 F 1.35101 * 119.86313 * 180.02562 * 12 11 10 14 14 C 1.38335 * 120.27116 * 359.97438 * 12 11 10 15 15 C 1.38703 * 120.02864 * 359.97438 * 14 12 11 16 16 O 1.35667 * 120.11954 * 180.02562 * 15 14 12 17 17 C 1.34805 * 117.00512 * 5.61991 * 16 15 14 18 18 H 1.08005 * 119.99596 * 354.93804 * 17 16 15 19 19 C 1.38644 * 120.00422 * 174.65790 * 17 16 15 20 20 N 1.31560 * 119.99525 * 0.28160 * 19 17 16 21 21 Si 1.86799 * 120.00104 * 180.27939 * 19 17 16 22 22 H 1.48493 * 109.47409 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47010 * 120.00260 * 21 19 17 24 24 H 1.48505 * 109.46847 * 240.00180 * 21 19 17 25 25 C 1.39464 * 119.88561 * 0.25050 * 8 7 6 26 26 F 1.35096 * 120.19230 * 179.70339 * 25 8 7 27 27 H 1.09007 * 109.46585 * 174.95997 * 1 2 3 28 28 H 1.09000 * 109.47242 * 294.96033 * 1 2 3 29 29 H 1.09001 * 109.47458 * 54.96155 * 1 2 3 30 30 H 1.07994 * 119.94707 * 359.97438 * 5 4 2 31 31 H 1.07999 * 119.80652 * 180.02562 * 6 5 4 32 32 H 1.08003 * 119.86563 * 179.97438 * 7 6 5 33 33 H 1.07999 * 120.01234 * 0.02562 * 10 9 8 34 34 H 1.08000 * 119.87443 * 179.78656 * 11 10 9 35 35 H 1.08005 * 119.98408 * 180.02562 * 14 12 11 36 36 H 0.97007 * 119.99777 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2420 -1.2730 -0.0006 5 6 1.5492 -2.4847 -0.1123 6 6 2.2392 -3.6781 -0.1133 7 6 3.6176 -3.6894 -0.0034 8 6 4.3232 -2.4929 0.1101 9 6 5.8011 -2.5104 0.2282 10 6 6.5818 -2.9718 -0.8293 11 6 7.9565 -2.9911 -0.7138 12 6 8.5659 -2.5490 0.4508 13 9 9.9127 -2.5709 0.5553 14 6 7.8006 -2.0847 1.5054 15 6 6.4177 -2.0592 1.4011 16 8 5.6654 -1.6038 2.4341 17 6 6.3244 -1.0819 3.4879 18 1 7.4035 -1.1148 3.5201 19 6 5.6174 -0.4978 4.5277 20 7 4.3030 -0.4578 4.4885 21 14 6.5311 0.2323 5.9843 22 1 7.9930 0.0600 5.7885 23 1 6.2128 1.6786 6.0938 24 1 6.1138 -0.4621 7.2289 25 6 3.6362 -1.2792 0.1181 26 9 4.3134 -0.1160 0.2339 27 1 -0.3633 -1.0238 -0.0903 28 1 -0.3634 0.4337 0.9317 29 1 -0.3634 0.5900 -0.8414 30 1 0.4727 -2.4843 -0.1978 31 1 1.7000 -4.6099 -0.2001 32 1 4.1496 -4.6293 -0.0047 33 1 6.1109 -3.3172 -1.7378 34 1 8.5602 -3.3523 -1.5333 35 1 8.2801 -1.7411 2.4101 36 1 3.8083 -0.0488 5.2158 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245153946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:10 Heat of formation + Delta-G solvation = -100.562219 kcal Electronic energy + Delta-G solvation = -26226.771058 eV Core-core repulsion = 22085.018266 eV Total energy + Delta-G solvation = -4141.752792 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -48.36201 -48.18736 -39.62396 -39.08352 -37.74256 -36.35894 -32.60854 -32.36717 -30.84393 -29.65787 -29.29341 -27.88945 -25.52240 -23.86313 -22.69864 -21.96738 -21.03019 -19.48611 -18.35322 -17.62666 -17.21765 -16.22098 -16.19317 -15.57822 -15.30986 -15.08224 -15.05748 -14.99940 -14.34907 -14.32718 -14.28852 -14.23872 -13.61262 -13.45810 -13.34479 -12.86365 -12.55123 -12.31506 -12.12334 -11.88901 -11.79509 -11.72251 -11.55365 -11.26523 -10.92212 -10.84010 -10.77131 -10.49779 -9.69179 -9.44094 -8.97431 -8.81917 -8.42397 -8.05201 -7.40799 -6.58102 -4.16892 0.84907 1.37917 1.85450 2.08474 2.64057 3.06822 3.09403 3.14759 3.84643 3.87069 4.15587 4.26434 4.60612 4.78003 4.87275 4.95671 5.03953 5.09225 5.12969 5.25448 5.39526 5.47061 5.48081 5.58417 5.67152 5.88667 6.00414 6.03550 6.16833 6.33629 6.35706 6.44724 6.53605 6.68933 6.77740 6.85203 6.96433 7.11846 7.22228 7.55344 7.77505 7.83843 8.85888 9.48192 10.57800 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.006414 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.393902 B = 4364.178325 C = 6442.527866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.392 3.608 3 O -0.447 6.447 4 C -0.214 4.214 5 C -0.057 4.057 6 C -0.151 4.151 7 C -0.052 4.052 8 C -0.057 4.057 9 C -0.154 4.154 10 C -0.026 4.026 11 C -0.252 4.252 12 C 0.150 3.850 13 F -0.150 7.150 14 C -0.271 4.271 15 C 0.191 3.809 16 O -0.151 6.151 17 C -0.397 4.397 18 H 0.096 0.904 19 C 0.046 3.954 20 N -0.846 5.846 21 Si 0.942 3.058 22 H -0.265 1.265 23 H -0.274 1.274 24 H -0.274 1.274 25 C 0.192 3.808 26 F -0.104 7.104 27 H 0.082 0.918 28 H 0.094 0.906 29 H 0.090 0.910 30 H 0.137 0.863 31 H 0.131 0.869 32 H 0.134 0.866 33 H 0.125 0.875 34 H 0.122 0.878 35 H 0.142 0.858 36 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.869 -6.185 -8.923 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C 0.269 3.731 3 O -0.322 6.322 4 C -0.216 4.216 5 C -0.075 4.075 6 C -0.170 4.170 7 C -0.070 4.070 8 C -0.058 4.058 9 C -0.155 4.155 10 C -0.044 4.044 11 C -0.271 4.271 12 C 0.131 3.869 13 F -0.129 7.129 14 C -0.291 4.291 15 C 0.134 3.866 16 O -0.051 6.051 17 C -0.472 4.472 18 H 0.113 0.887 19 C -0.161 4.161 20 N -0.479 5.479 21 Si 0.766 3.234 22 H -0.189 1.189 23 H -0.199 1.199 24 H -0.199 1.199 25 C 0.172 3.828 26 F -0.082 7.082 27 H 0.101 0.899 28 H 0.113 0.887 29 H 0.108 0.892 30 H 0.154 0.846 31 H 0.149 0.851 32 H 0.151 0.849 33 H 0.143 0.857 34 H 0.140 0.860 35 H 0.159 0.841 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -5.934 -5.458 -8.687 11.852 hybrid contribution 0.905 0.458 0.965 1.400 sum -5.029 -5.000 -7.723 10.485 Atomic orbital electron populations 1.22189 0.93801 1.04477 1.04769 1.22268 0.91588 0.87428 0.71810 1.90609 1.71904 1.34039 1.35615 1.20499 0.92503 0.96488 1.12094 1.21256 0.99697 0.90675 0.95899 1.20956 0.94071 0.97983 1.03944 1.21330 0.93834 0.96986 0.94882 1.18565 0.93023 0.91484 1.02761 1.17584 0.90536 1.13212 0.94213 1.20476 0.92174 0.95511 0.96267 1.20424 0.95030 1.13440 0.98242 1.17531 0.75926 0.98499 0.94981 1.91423 1.30455 1.94335 1.96657 1.20982 0.93893 1.13105 1.01088 1.18940 0.88920 0.91065 0.87709 1.83973 1.33669 1.64597 1.22889 1.21445 0.92298 1.37740 0.95729 0.88704 1.25328 0.95817 0.96237 0.98700 1.70052 1.05679 1.39905 1.32248 0.85630 0.79289 0.78894 0.79596 1.18876 1.19889 1.19941 1.18030 0.88567 0.81920 0.94269 1.91600 1.79611 1.45549 1.91410 0.89910 0.88702 0.89183 0.84564 0.85131 0.84861 0.85693 0.85990 0.84056 0.91788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.15 10.19 36.00 0.37 -1.79 16 2 C 0.39 6.68 7.21 -30.76 -0.22 6.46 16 3 O -0.45 -9.60 16.10 5.56 0.09 -9.51 16 4 C -0.21 -3.74 5.87 -105.05 -0.62 -4.36 16 5 C -0.06 -0.75 9.44 -39.05 -0.37 -1.12 16 6 C -0.15 -1.90 10.01 -39.70 -0.40 -2.30 16 7 C -0.05 -0.79 9.72 -39.14 -0.38 -1.17 16 8 C -0.06 -1.11 4.95 -104.89 -0.52 -1.63 16 9 C -0.15 -3.16 5.02 -104.72 -0.53 -3.69 16 10 C -0.03 -0.45 9.73 -39.28 -0.38 -0.83 16 11 C -0.25 -4.36 10.01 -39.52 -0.40 -4.76 16 12 C 0.15 2.95 7.29 -39.38 -0.29 2.66 16 13 F -0.15 -2.83 17.26 2.25 0.04 -2.79 16 14 C -0.27 -6.01 9.14 -39.37 -0.36 -6.37 16 15 C 0.19 4.55 6.44 -38.76 -0.25 4.30 16 16 O -0.15 -4.17 8.91 0.38 0.00 -4.17 16 17 C -0.40 -10.94 9.49 30.88 0.29 -10.64 16 18 H 0.10 2.44 5.21 -52.48 -0.27 2.17 16 19 C 0.05 1.24 5.49 -17.52 -0.10 1.15 16 20 N -0.85 -24.39 13.67 55.48 0.76 -23.63 16 21 Si 0.94 20.50 29.55 -169.99 -5.02 15.48 16 22 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 23 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 24 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 25 C 0.19 4.06 6.93 -38.49 -0.27 3.79 16 26 F -0.10 -2.59 14.92 2.25 0.03 -2.56 16 27 H 0.08 0.67 5.62 -51.92 -0.29 0.38 16 28 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.14 1.22 5.93 -52.49 -0.31 0.91 16 31 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 32 H 0.13 1.70 8.06 -52.48 -0.42 1.28 16 33 H 0.13 1.71 8.06 -52.49 -0.42 1.29 16 34 H 0.12 1.77 8.06 -52.49 -0.42 1.34 16 35 H 0.14 3.17 5.64 -52.48 -0.30 2.87 16 36 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 LS Contribution 327.86 15.07 4.94 4.94 Total: -1.00 -33.28 327.86 -6.41 -39.69 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -2.84 Total: 2.83 kcal Atomic # 6 Polarization: -15.87 SS G_CDS: -4.41 Total: -20.28 kcal Atomic # 7 Polarization: -24.39 SS G_CDS: 0.76 Total: -23.63 kcal Atomic # 8 Polarization: -13.78 SS G_CDS: 0.09 Total: -13.68 kcal Atomic # 9 Polarization: -5.42 SS G_CDS: 0.07 Total: -5.35 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -33.28 -6.41 -39.69 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245153946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.871 kcal (2) G-P(sol) polarization free energy of solvation -33.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds