Wall clock time and date at job start Tue Mar 31 2020 12:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 O 1.21275 * 119.99726 * 2 1 4 4 C 1.46996 * 120.00253 * 180.02562 * 2 1 3 5 5 C 1.40025 * 120.13373 * 5.26695 * 4 2 1 6 6 C 1.37854 * 120.10414 * 179.97438 * 5 4 2 7 7 C 1.38287 * 120.39157 * 0.04349 * 6 5 4 8 8 C 1.39366 * 120.27154 * 0.02562 * 7 6 5 9 9 C 1.48274 * 120.06029 * 179.97438 * 8 7 6 10 10 C 1.39305 * 120.13377 * 65.20717 * 9 8 7 11 11 C 1.37972 * 119.96527 * 180.23525 * 10 9 8 12 12 C 1.38674 * 120.24718 * 359.80970 * 11 10 9 13 13 F 1.35101 * 119.86313 * 180.02562 * 12 11 10 14 14 C 1.38335 * 120.27116 * 359.97438 * 12 11 10 15 15 C 1.38703 * 120.02864 * 359.97438 * 14 12 11 16 16 O 1.35667 * 120.11954 * 180.02562 * 15 14 12 17 17 C 1.34805 * 117.00512 * 5.61991 * 16 15 14 18 18 H 1.08005 * 119.99596 * 354.93804 * 17 16 15 19 19 C 1.38644 * 120.00422 * 174.65790 * 17 16 15 20 20 N 1.31560 * 119.99525 * 0.28160 * 19 17 16 21 21 Si 1.86799 * 120.00104 * 180.27939 * 19 17 16 22 22 H 1.48493 * 109.47409 * 359.97438 * 21 19 17 23 23 H 1.48495 * 109.47010 * 120.00260 * 21 19 17 24 24 H 1.48505 * 109.46847 * 240.00180 * 21 19 17 25 25 C 1.39464 * 119.88561 * 0.25050 * 8 7 6 26 26 F 1.35096 * 120.19230 * 179.70339 * 25 8 7 27 27 H 1.09007 * 109.46585 * 174.95997 * 1 2 3 28 28 H 1.09000 * 109.47242 * 294.96033 * 1 2 3 29 29 H 1.09001 * 109.47458 * 54.96155 * 1 2 3 30 30 H 1.07994 * 119.94707 * 359.97438 * 5 4 2 31 31 H 1.07999 * 119.80652 * 180.02562 * 6 5 4 32 32 H 1.08003 * 119.86563 * 179.97438 * 7 6 5 33 33 H 1.07999 * 120.01234 * 0.02562 * 10 9 8 34 34 H 1.08000 * 119.87443 * 179.78656 * 11 10 9 35 35 H 1.08005 * 119.98408 * 180.02562 * 14 12 11 36 36 H 0.97007 * 119.99777 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 6 2.2420 -1.2730 -0.0006 5 6 1.5492 -2.4847 -0.1123 6 6 2.2392 -3.6781 -0.1133 7 6 3.6176 -3.6894 -0.0034 8 6 4.3232 -2.4929 0.1101 9 6 5.8011 -2.5104 0.2282 10 6 6.5818 -2.9718 -0.8293 11 6 7.9565 -2.9911 -0.7138 12 6 8.5659 -2.5490 0.4508 13 9 9.9127 -2.5709 0.5553 14 6 7.8006 -2.0847 1.5054 15 6 6.4177 -2.0592 1.4011 16 8 5.6654 -1.6038 2.4341 17 6 6.3244 -1.0819 3.4879 18 1 7.4035 -1.1148 3.5201 19 6 5.6174 -0.4978 4.5277 20 7 4.3030 -0.4578 4.4885 21 14 6.5311 0.2323 5.9843 22 1 7.9930 0.0600 5.7885 23 1 6.2128 1.6786 6.0938 24 1 6.1138 -0.4621 7.2289 25 6 3.6362 -1.2792 0.1181 26 9 4.3134 -0.1160 0.2339 27 1 -0.3633 -1.0238 -0.0903 28 1 -0.3634 0.4337 0.9317 29 1 -0.3634 0.5900 -0.8414 30 1 0.4727 -2.4843 -0.1978 31 1 1.7000 -4.6099 -0.2001 32 1 4.1496 -4.6293 -0.0047 33 1 6.1109 -3.3172 -1.7378 34 1 8.5602 -3.3523 -1.5333 35 1 8.2801 -1.7411 2.4101 36 1 3.8083 -0.0488 5.2158 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245153946.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:10 Heat of formation + Delta-G solvation = -121.133738 kcal Electronic energy + Delta-G solvation = -26227.663106 eV Core-core repulsion = 22085.018266 eV Total energy + Delta-G solvation = -4142.644840 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 318.085 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -49.93117 -49.81209 -41.11221 -40.57669 -39.13003 -38.00298 -34.41254 -33.87325 -32.10291 -31.15218 -30.57295 -29.28221 -27.46277 -25.11761 -24.10905 -23.62578 -22.42475 -20.81043 -20.16638 -19.30350 -18.61913 -17.62359 -17.56742 -17.20708 -17.02432 -16.64116 -16.58044 -16.40057 -16.02252 -15.72873 -15.62145 -15.50713 -15.41991 -15.16242 -14.86499 -14.18064 -14.16133 -13.74968 -13.48109 -13.21002 -13.06762 -12.91892 -12.87217 -12.84509 -12.43751 -12.36400 -12.22266 -12.16539 -11.56188 -10.90054 -10.75749 -10.14467 -9.79911 -9.56739 -9.06036 -8.56471 -6.24485 -0.40195 -0.04414 0.40112 0.49021 1.27459 1.35645 1.39317 1.45260 2.08088 2.51404 2.69768 2.96942 3.06264 3.18116 3.34727 3.39084 3.62388 3.92098 3.95496 4.02874 4.13674 4.17060 4.35032 4.43062 4.55261 4.64738 4.74772 4.88165 4.96861 4.99999 5.00912 5.15510 5.20229 5.21088 5.29763 5.32931 5.41658 5.48214 5.86869 5.92219 5.98119 6.53436 6.86804 7.60751 8.64417 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.009424 B = 0.006414 C = 0.004345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2970.393902 B = 4364.178325 C = 6442.527866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.382 3.618 3 O -0.511 6.511 4 C -0.237 4.237 5 C -0.037 4.037 6 C -0.133 4.133 7 C -0.049 4.049 8 C -0.089 4.089 9 C -0.153 4.153 10 C -0.017 4.017 11 C -0.220 4.220 12 C 0.140 3.860 13 F -0.144 7.144 14 C -0.289 4.289 15 C 0.157 3.843 16 O -0.197 6.197 17 C -0.421 4.421 18 H 0.097 0.903 19 C -0.012 4.012 20 N -0.902 5.902 21 Si 1.012 2.988 22 H -0.255 1.255 23 H -0.271 1.271 24 H -0.260 1.260 25 C 0.134 3.866 26 F -0.147 7.147 27 H 0.122 0.878 28 H 0.099 0.901 29 H 0.110 0.890 30 H 0.190 0.810 31 H 0.186 0.814 32 H 0.160 0.840 33 H 0.173 0.827 34 H 0.167 0.833 35 H 0.126 0.874 36 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.349 -9.380 -11.151 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.263 3.737 3 O -0.390 6.390 4 C -0.239 4.239 5 C -0.054 4.054 6 C -0.150 4.150 7 C -0.067 4.067 8 C -0.090 4.090 9 C -0.155 4.155 10 C -0.035 4.035 11 C -0.239 4.239 12 C 0.121 3.879 13 F -0.123 7.123 14 C -0.310 4.310 15 C 0.104 3.896 16 O -0.101 6.101 17 C -0.497 4.497 18 H 0.114 0.886 19 C -0.212 4.212 20 N -0.538 5.538 21 Si 0.832 3.168 22 H -0.178 1.178 23 H -0.197 1.197 24 H -0.184 1.184 25 C 0.115 3.885 26 F -0.125 7.125 27 H 0.140 0.860 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.207 0.793 31 H 0.203 0.797 32 H 0.178 0.822 33 H 0.190 0.810 34 H 0.184 0.816 35 H 0.143 0.857 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.387 -8.705 -10.964 15.829 hybrid contribution 1.407 1.216 1.304 2.271 sum -5.980 -7.489 -9.660 13.608 Atomic orbital electron populations 1.22235 0.88498 1.07491 1.05774 1.23331 0.94460 0.86442 0.69428 1.90583 1.73718 1.35964 1.38785 1.20967 0.91431 0.98805 1.12661 1.21911 1.02108 0.88864 0.92516 1.21615 0.93025 0.99901 1.00489 1.21756 0.95391 0.96159 0.93394 1.18770 0.92556 0.92523 1.05131 1.18126 0.92308 1.11439 0.93578 1.21036 0.92002 0.93874 0.96603 1.20990 0.95487 1.09647 0.97754 1.17642 0.76120 0.98944 0.95228 1.91435 1.29894 1.94306 1.96677 1.21027 0.93928 1.14217 1.01795 1.19573 0.89729 0.91741 0.88555 1.83963 1.34590 1.67449 1.24100 1.21814 0.92675 1.38613 0.96598 0.88556 1.26496 0.96708 0.96454 1.01511 1.70184 1.07428 1.42537 1.33666 0.84624 0.78324 0.77893 0.75996 1.17801 1.19651 1.18440 1.18742 0.90522 0.81373 0.97912 1.91476 1.80679 1.47922 1.92454 0.86004 0.88264 0.87121 0.79288 0.79661 0.82193 0.80981 0.81558 0.85675 0.91765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.58 10.19 71.24 0.73 -2.85 16 2 C 0.38 13.29 7.21 27.98 0.20 13.49 16 3 O -0.51 -23.71 16.10 -3.02 -0.05 -23.76 16 4 C -0.24 -8.27 5.87 -20.14 -0.12 -8.39 16 5 C -0.04 -0.81 9.44 22.61 0.21 -0.59 16 6 C -0.13 -2.66 10.01 22.19 0.22 -2.43 16 7 C -0.05 -1.34 9.72 22.55 0.22 -1.12 16 8 C -0.09 -3.46 4.95 -20.04 -0.10 -3.55 16 9 C -0.15 -6.36 5.02 -19.93 -0.10 -6.46 16 10 C -0.02 -0.55 9.73 22.46 0.22 -0.33 16 11 C -0.22 -6.91 10.01 22.31 0.22 -6.69 16 12 C 0.14 5.42 7.29 22.40 0.16 5.59 16 13 F -0.14 -5.31 17.26 44.97 0.78 -4.53 16 14 C -0.29 -13.52 9.14 22.40 0.20 -13.32 16 15 C 0.16 7.95 6.44 22.80 0.15 8.10 16 16 O -0.20 -11.84 8.91 -21.57 -0.19 -12.03 16 17 C -0.42 -25.16 9.49 67.92 0.64 -24.52 16 18 H 0.10 5.42 5.21 -2.91 -0.02 5.40 16 19 C -0.01 -0.69 5.49 84.83 0.47 -0.23 16 20 N -0.90 -55.83 13.67 21.61 0.30 -55.54 16 21 Si 1.01 44.46 29.55 68.60 2.03 46.49 16 22 H -0.25 -10.53 7.11 99.48 0.71 -9.82 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 24 H -0.26 -10.67 7.11 99.48 0.71 -9.96 16 25 C 0.13 5.96 6.93 22.97 0.16 6.12 16 26 F -0.15 -8.09 14.92 44.97 0.67 -7.42 16 27 H 0.12 1.32 5.62 -2.38 -0.01 1.31 16 28 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 29 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.19 2.06 5.93 -2.91 -0.02 2.05 16 31 H 0.19 1.80 8.06 -2.91 -0.02 1.77 16 32 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 33 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 34 H 0.17 3.86 8.06 -2.91 -0.02 3.84 16 35 H 0.13 6.09 5.64 -2.91 -0.02 6.08 16 36 H 0.27 15.51 8.31 -92.70 -0.77 14.74 16 Total: -1.00 -86.84 327.86 8.18 -78.66 By element: Atomic # 1 Polarization: 14.17 SS G_CDS: 1.16 Total: 15.32 kcal Atomic # 6 Polarization: -40.69 SS G_CDS: 3.49 Total: -37.19 kcal Atomic # 7 Polarization: -55.83 SS G_CDS: 0.30 Total: -55.54 kcal Atomic # 8 Polarization: -35.55 SS G_CDS: -0.24 Total: -35.79 kcal Atomic # 9 Polarization: -13.40 SS G_CDS: 1.45 Total: -11.95 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Total: -86.84 8.18 -78.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245153946.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.471 kcal (2) G-P(sol) polarization free energy of solvation -86.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.309 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds