Wall clock time and date at job start Tue Mar 31 2020 12:32:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35997 * 116.99487 * 2 1 4 4 C 1.38779 * 120.04637 * 92.30112 * 3 2 1 5 5 F 1.35107 * 119.94681 * 359.97438 * 4 3 2 6 6 C 1.38275 * 120.10765 * 180.27188 * 4 3 2 7 7 C 1.39038 * 120.20175 * 359.69847 * 6 4 3 8 8 S 1.76196 * 119.95668 * 179.97438 * 7 6 4 9 9 C 1.81394 * 103.00019 * 0.02562 * 8 7 6 10 10 C 1.38652 * 120.08673 * 0.02562 * 7 6 4 11 11 C 1.39309 * 119.89666 * 0.02562 * 10 7 6 12 12 C 1.48356 * 120.10074 * 179.97438 * 11 10 7 13 13 C 1.39757 * 120.00285 * 124.27924 * 12 11 10 14 14 C 1.38378 * 120.37524 * 179.97438 * 13 12 11 15 15 C 1.37725 * 120.38141 * 359.97438 * 14 13 12 16 16 C 1.40759 * 119.99407 * 359.97438 * 15 14 13 17 17 C 1.41426 * 120.18356 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99669 * 151.53733 * 17 16 15 19 19 C 1.39924 * 120.00450 * 331.53707 * 17 16 15 20 20 N 1.30831 * 120.00387 * 161.29455 * 19 17 16 21 21 Si 1.86803 * 119.99753 * 341.29595 * 19 17 16 22 22 H 1.48503 * 109.47044 * 90.59167 * 21 19 17 23 23 H 1.48496 * 109.46887 * 210.58802 * 21 19 17 24 24 H 1.48493 * 109.47036 * 330.59002 * 21 19 17 25 25 C 1.38750 * 119.99614 * 304.25374 * 12 11 10 26 26 H 1.09005 * 109.46801 * 304.90593 * 1 2 3 27 27 H 1.09000 * 109.47199 * 64.91396 * 1 2 3 28 28 H 1.09001 * 109.46723 * 184.91211 * 1 2 3 29 29 H 1.07998 * 119.90005 * 179.71641 * 6 4 3 30 30 H 1.09002 * 109.47299 * 60.00012 * 9 8 7 31 31 H 1.08999 * 109.47518 * 179.97438 * 9 8 7 32 32 H 1.09005 * 109.47489 * 300.00023 * 9 8 7 33 33 H 1.08006 * 120.05663 * 180.02562 * 10 7 6 34 34 H 1.08003 * 119.80806 * 359.69742 * 13 12 11 35 35 H 1.07997 * 119.81227 * 179.97438 * 14 13 12 36 36 H 1.08002 * 120.00508 * 179.97438 * 15 14 13 37 37 H 0.97000 * 120.00151 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.19446 * 0.04820 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 2.4047 1.8091 1.2003 5 9 2.1394 1.1859 2.3694 6 6 3.0274 3.0437 1.2020 7 6 3.3030 3.6897 0.0021 8 16 4.0960 5.2631 0.0118 9 6 4.3344 5.5889 1.7803 10 6 2.9537 3.0979 -1.2021 11 6 2.3253 1.8546 -1.2083 12 6 1.9490 1.2175 -2.4942 13 6 2.4085 -0.0668 -2.7986 14 6 2.0619 -0.6686 -3.9955 15 6 1.2597 -0.0090 -4.9001 16 6 0.7871 1.2846 -4.6092 17 6 -0.0373 1.9653 -5.5349 18 1 -0.7542 2.6937 -5.1858 19 6 0.0757 1.6951 -6.9032 20 7 -0.8944 2.0236 -7.7172 21 14 1.6118 0.8654 -7.5676 22 1 1.4222 -0.6074 -7.5583 23 1 1.8599 1.3238 -8.9581 24 1 2.7743 1.2203 -6.7145 25 6 1.1404 1.8965 -3.3943 26 1 -0.3633 0.5881 0.8428 27 1 -0.3633 0.4357 -0.9307 28 1 -0.3633 -1.0239 0.0880 29 1 3.3007 3.5075 2.1383 30 1 4.9547 4.8045 2.2139 31 1 4.8261 6.5532 1.9091 32 1 3.3662 5.6047 2.2807 33 1 3.1684 3.6000 -2.1340 34 1 3.0415 -0.5907 -2.0977 35 1 2.4225 -1.6611 -4.2217 36 1 0.9932 -0.4842 -5.8326 37 1 -0.8159 1.8366 -8.6658 38 1 0.7838 2.8892 -3.1624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245226061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:45 Heat of formation + Delta-G solvation = -39.965747 kcal Electronic energy + Delta-G solvation = -23593.048331 eV Core-core repulsion = 20020.136375 eV Total energy + Delta-G solvation = -3572.911956 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -48.88364 -39.80637 -37.60889 -37.12353 -33.78370 -32.13022 -30.42212 -30.11999 -29.55344 -28.26393 -26.64247 -25.20789 -23.33378 -22.56274 -20.82312 -20.56856 -18.31102 -17.62829 -17.02789 -16.68580 -15.99114 -15.90723 -15.86638 -15.13155 -14.82180 -14.60673 -14.30436 -14.10411 -14.02816 -13.84266 -13.37248 -12.99851 -12.82298 -12.71537 -12.45473 -12.22690 -11.99696 -11.84866 -11.59794 -11.37470 -10.85062 -10.74416 -10.51674 -10.46108 -9.97660 -9.78904 -9.65426 -9.39329 -9.16481 -8.81447 -7.76626 -7.58645 -7.45133 -6.98754 -4.53115 0.88181 1.07566 1.31627 2.18276 2.46445 2.58226 3.08762 3.19269 3.27398 3.32647 3.90818 3.94877 4.23303 4.46230 4.66414 4.78847 4.79122 5.01271 5.13947 5.30122 5.37423 5.42426 5.46716 5.59792 5.68945 5.88400 5.97583 5.98481 6.08527 6.25586 6.29275 6.43661 6.59025 6.70258 6.85383 7.06321 7.32000 7.54054 7.57296 7.68223 7.79881 8.00467 8.30317 8.57936 8.75349 10.03772 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.004097 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.068463 B = 6833.398867 C = 8009.185284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.318 6.318 3 C 0.066 3.934 4 C 0.099 3.901 5 F -0.134 7.134 6 C -0.172 4.172 7 C -0.065 4.065 8 S -0.100 6.100 9 C -0.150 4.150 10 C -0.087 4.087 11 C 0.012 3.988 12 C -0.033 4.033 13 C -0.202 4.202 14 C -0.081 4.081 15 C -0.234 4.234 16 C 0.091 3.909 17 C -0.449 4.449 18 H 0.090 0.910 19 C 0.085 3.915 20 N -0.807 5.807 21 Si 0.913 3.087 22 H -0.269 1.269 23 H -0.292 1.292 24 H -0.247 1.247 25 C -0.185 4.185 26 H 0.040 0.960 27 H 0.057 0.943 28 H 0.094 0.906 29 H 0.136 0.864 30 H 0.084 0.916 31 H 0.108 0.892 32 H 0.084 0.916 33 H 0.143 0.857 34 H 0.098 0.902 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.285 0.715 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.091 3.089 14.857 16.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.234 6.234 3 C 0.018 3.982 4 C 0.077 3.923 5 F -0.112 7.112 6 C -0.197 4.197 7 C -0.178 4.178 8 S 0.142 5.858 9 C -0.318 4.318 10 C -0.111 4.111 11 C 0.009 3.991 12 C -0.034 4.034 13 C -0.221 4.221 14 C -0.099 4.099 15 C -0.253 4.253 16 C 0.088 3.912 17 C -0.477 4.477 18 H 0.108 0.892 19 C -0.134 4.134 20 N -0.431 5.431 21 Si 0.740 3.260 22 H -0.195 1.195 23 H -0.219 1.219 24 H -0.170 1.170 25 C -0.205 4.205 26 H 0.058 0.942 27 H 0.076 0.924 28 H 0.112 0.888 29 H 0.154 0.846 30 H 0.103 0.897 31 H 0.127 0.873 32 H 0.103 0.897 33 H 0.161 0.839 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.096 0.904 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.374 3.782 13.804 16.100 hybrid contribution -0.077 -1.153 0.894 1.461 sum 7.296 2.629 14.698 16.618 Atomic orbital electron populations 1.23015 0.78611 1.03130 1.01012 1.86074 1.20115 1.23151 1.94056 1.18658 1.00868 0.88358 0.90271 1.17736 1.01935 0.91831 0.80761 1.91479 1.92058 1.82088 1.45607 1.20884 1.05392 0.95234 0.98147 1.21371 1.02666 0.98412 0.95337 1.85620 1.73053 1.17786 1.09321 1.23713 1.05767 1.06274 0.96077 1.20919 0.98860 0.94435 0.96853 1.19233 0.94737 0.92190 0.92927 1.18153 0.99778 0.94625 0.90825 1.20356 1.08005 0.95294 0.98459 1.20542 0.97329 0.97935 0.94081 1.21230 1.06886 0.96411 1.00798 1.17611 0.90229 0.90976 0.92396 1.19454 1.17174 1.20723 0.90376 0.89184 1.26134 0.97239 0.92839 0.97172 1.69696 1.30583 1.36962 1.05906 0.86344 0.83110 0.79330 0.77240 1.19491 1.21920 1.16980 1.21050 1.04040 0.99043 0.96326 0.94176 0.92398 0.88808 0.84618 0.89681 0.87310 0.89668 0.83949 0.88395 0.88541 0.87867 0.90408 0.87922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.54 11.13 101.05 1.12 1.66 16 2 O -0.32 -5.52 9.10 -19.73 -0.18 -5.70 16 3 C 0.07 1.12 5.66 -38.84 -0.22 0.90 16 4 C 0.10 1.51 7.30 -39.37 -0.29 1.22 16 5 F -0.13 -2.02 17.10 2.25 0.04 -1.98 16 6 C -0.17 -2.27 9.33 -39.27 -0.37 -2.64 16 7 C -0.07 -0.90 6.10 -39.13 -0.24 -1.14 16 8 S -0.10 -1.14 22.56 -107.50 -2.42 -3.57 16 9 C -0.15 -1.11 9.14 101.05 0.92 -0.18 16 10 C -0.09 -1.40 9.34 -39.03 -0.36 -1.76 16 11 C 0.01 0.21 5.41 -104.80 -0.57 -0.36 16 12 C -0.03 -0.69 5.12 -104.98 -0.54 -1.22 16 13 C -0.20 -4.18 8.95 -38.96 -0.35 -4.53 16 14 C -0.08 -1.72 10.01 -39.72 -0.40 -2.12 16 15 C -0.23 -5.51 7.29 -38.82 -0.28 -5.79 16 16 C 0.09 2.23 5.13 -106.86 -0.55 1.68 16 17 C -0.45 -11.83 9.57 -37.74 -0.36 -12.20 16 18 H 0.09 2.48 8.06 -52.49 -0.42 2.06 16 19 C 0.09 2.19 5.40 -17.35 -0.09 2.09 16 20 N -0.81 -21.17 13.93 55.55 0.77 -20.39 16 21 Si 0.91 20.51 24.55 -169.99 -4.17 16.34 16 22 H -0.27 -5.86 6.45 56.52 0.36 -5.49 16 23 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 24 H -0.25 -5.67 7.04 56.52 0.40 -5.27 16 25 C -0.19 -4.15 9.34 -38.53 -0.36 -4.51 16 26 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.14 1.42 5.85 -52.49 -0.31 1.11 16 30 H 0.08 0.58 7.74 -51.92 -0.40 0.17 16 31 H 0.11 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.08 0.58 7.74 -51.92 -0.40 0.18 16 33 H 0.14 2.26 8.06 -52.48 -0.42 1.84 16 34 H 0.10 1.92 8.05 -52.48 -0.42 1.50 16 35 H 0.10 1.80 8.06 -52.49 -0.42 1.38 16 36 H 0.10 2.43 4.43 -52.49 -0.23 2.20 16 37 H 0.29 6.79 8.30 -40.82 -0.34 6.45 16 38 H 0.10 2.20 8.06 -52.49 -0.42 1.78 16 LS Contribution 338.96 15.07 5.11 5.11 Total: -1.00 -27.45 338.96 -8.11 -35.56 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -4.32 Total: 3.52 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: -2.92 Total: -28.88 kcal Atomic # 7 Polarization: -21.17 SS G_CDS: 0.77 Total: -20.39 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.18 Total: -5.70 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.04 Total: -1.98 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.17 Total: 16.34 kcal Atomic # 16 Polarization: -1.14 SS G_CDS: -2.42 Total: -3.57 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -27.45 -8.11 -35.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245226061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.406 kcal (2) G-P(sol) polarization free energy of solvation -27.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.559 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds