Wall clock time and date at job start Tue Mar 31 2020 12:32:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35997 * 116.99487 * 2 1 4 4 C 1.38779 * 120.04637 * 92.30112 * 3 2 1 5 5 F 1.35107 * 119.94681 * 359.97438 * 4 3 2 6 6 C 1.38275 * 120.10765 * 180.27188 * 4 3 2 7 7 C 1.39038 * 120.20175 * 359.69847 * 6 4 3 8 8 S 1.76196 * 119.95668 * 179.97438 * 7 6 4 9 9 C 1.81394 * 103.00019 * 0.02562 * 8 7 6 10 10 C 1.38652 * 120.08673 * 0.02562 * 7 6 4 11 11 C 1.39309 * 119.89666 * 0.02562 * 10 7 6 12 12 C 1.48356 * 120.10074 * 179.97438 * 11 10 7 13 13 C 1.39757 * 120.00285 * 124.27924 * 12 11 10 14 14 C 1.38378 * 120.37524 * 179.97438 * 13 12 11 15 15 C 1.37725 * 120.38141 * 359.97438 * 14 13 12 16 16 C 1.40759 * 119.99407 * 359.97438 * 15 14 13 17 17 C 1.41426 * 120.18356 * 180.02562 * 16 15 14 18 18 H 1.08001 * 119.99669 * 151.53733 * 17 16 15 19 19 C 1.39924 * 120.00450 * 331.53707 * 17 16 15 20 20 N 1.30831 * 120.00387 * 161.29455 * 19 17 16 21 21 Si 1.86803 * 119.99753 * 341.29595 * 19 17 16 22 22 H 1.48503 * 109.47044 * 90.59167 * 21 19 17 23 23 H 1.48496 * 109.46887 * 210.58802 * 21 19 17 24 24 H 1.48493 * 109.47036 * 330.59002 * 21 19 17 25 25 C 1.38750 * 119.99614 * 304.25374 * 12 11 10 26 26 H 1.09005 * 109.46801 * 304.90593 * 1 2 3 27 27 H 1.09000 * 109.47199 * 64.91396 * 1 2 3 28 28 H 1.09001 * 109.46723 * 184.91211 * 1 2 3 29 29 H 1.07998 * 119.90005 * 179.71641 * 6 4 3 30 30 H 1.09002 * 109.47299 * 60.00012 * 9 8 7 31 31 H 1.08999 * 109.47518 * 179.97438 * 9 8 7 32 32 H 1.09005 * 109.47489 * 300.00023 * 9 8 7 33 33 H 1.08006 * 120.05663 * 180.02562 * 10 7 6 34 34 H 1.08003 * 119.80806 * 359.69742 * 13 12 11 35 35 H 1.07997 * 119.81227 * 179.97438 * 14 13 12 36 36 H 1.08002 * 120.00508 * 179.97438 * 15 14 13 37 37 H 0.97000 * 120.00151 * 179.97438 * 20 19 17 38 38 H 1.07998 * 120.19446 * 0.04820 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2118 0.0000 4 6 2.4047 1.8091 1.2003 5 9 2.1394 1.1859 2.3694 6 6 3.0274 3.0437 1.2020 7 6 3.3030 3.6897 0.0021 8 16 4.0960 5.2631 0.0118 9 6 4.3344 5.5889 1.7803 10 6 2.9537 3.0979 -1.2021 11 6 2.3253 1.8546 -1.2083 12 6 1.9490 1.2175 -2.4942 13 6 2.4085 -0.0668 -2.7986 14 6 2.0619 -0.6686 -3.9955 15 6 1.2597 -0.0090 -4.9001 16 6 0.7871 1.2846 -4.6092 17 6 -0.0373 1.9653 -5.5349 18 1 -0.7542 2.6937 -5.1858 19 6 0.0757 1.6951 -6.9032 20 7 -0.8944 2.0236 -7.7172 21 14 1.6118 0.8654 -7.5676 22 1 1.4222 -0.6074 -7.5583 23 1 1.8599 1.3238 -8.9581 24 1 2.7743 1.2203 -6.7145 25 6 1.1404 1.8965 -3.3943 26 1 -0.3633 0.5881 0.8428 27 1 -0.3633 0.4357 -0.9307 28 1 -0.3633 -1.0239 0.0880 29 1 3.3007 3.5075 2.1383 30 1 4.9547 4.8045 2.2139 31 1 4.8261 6.5532 1.9091 32 1 3.3662 5.6047 2.2807 33 1 3.1684 3.6000 -2.1340 34 1 3.0415 -0.5907 -2.0977 35 1 2.4225 -1.6611 -4.2217 36 1 0.9932 -0.4842 -5.8326 37 1 -0.8159 1.8366 -8.6658 38 1 0.7838 2.8892 -3.1624 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245226061.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:32:44 Heat of formation + Delta-G solvation = -52.973517 kcal Electronic energy + Delta-G solvation = -23593.612390 eV Core-core repulsion = 20020.136375 eV Total energy + Delta-G solvation = -3573.476015 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -50.05626 -41.12030 -39.28735 -38.36257 -35.62580 -33.61542 -32.18904 -31.33208 -30.58082 -29.38015 -27.84819 -27.07183 -24.72675 -23.79363 -22.37637 -22.33614 -19.76980 -18.88681 -18.46975 -18.02438 -17.65576 -17.18774 -16.95704 -16.46854 -16.18668 -15.90566 -15.71303 -15.58688 -15.41392 -14.67909 -14.59777 -14.43318 -14.31608 -13.90120 -13.88983 -13.48557 -13.29573 -13.24823 -13.13075 -12.70804 -12.65958 -12.37250 -12.19947 -11.71792 -11.52031 -11.34552 -11.09461 -10.98311 -10.57015 -10.10678 -9.56818 -9.24450 -8.90774 -8.44740 -6.51480 -0.34027 -0.15453 0.40820 0.78832 0.79178 1.26844 1.38434 1.41063 1.48914 2.07161 2.12049 2.54818 2.73142 3.03332 3.42818 3.51810 3.87161 3.92684 4.15227 4.28132 4.29658 4.31084 4.32240 4.42694 4.50865 4.51671 4.62818 4.71256 4.74392 4.83733 4.91767 4.93224 4.98010 5.11255 5.24512 5.41309 5.55135 5.77287 5.85945 5.94945 6.19026 6.34160 6.36839 6.70649 6.81105 8.17770 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.014858 B = 0.004097 C = 0.003495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1884.068463 B = 6833.398867 C = 8009.185284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.333 6.333 3 C 0.054 3.946 4 C 0.096 3.904 5 F -0.131 7.131 6 C -0.153 4.153 7 C -0.061 4.061 8 S -0.118 6.118 9 C -0.143 4.143 10 C -0.095 4.095 11 C -0.014 4.014 12 C -0.023 4.023 13 C -0.192 4.192 14 C -0.081 4.081 15 C -0.247 4.247 16 C 0.076 3.924 17 C -0.485 4.485 18 H 0.056 0.944 19 C 0.051 3.949 20 N -0.848 5.848 21 Si 0.964 3.036 22 H -0.255 1.255 23 H -0.278 1.278 24 H -0.256 1.256 25 C -0.196 4.196 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.116 0.884 29 H 0.171 0.829 30 H 0.098 0.902 31 H 0.131 0.869 32 H 0.096 0.904 33 H 0.136 0.864 34 H 0.116 0.884 35 H 0.129 0.871 36 H 0.102 0.898 37 H 0.294 0.706 38 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.445 2.791 17.580 20.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.250 6.250 3 C 0.007 3.993 4 C 0.075 3.925 5 F -0.110 7.110 6 C -0.178 4.178 7 C -0.174 4.174 8 S 0.125 5.875 9 C -0.311 4.311 10 C -0.119 4.119 11 C -0.017 4.017 12 C -0.023 4.023 13 C -0.211 4.211 14 C -0.099 4.099 15 C -0.266 4.266 16 C 0.073 3.927 17 C -0.514 4.514 18 H 0.074 0.926 19 C -0.164 4.164 20 N -0.474 5.474 21 Si 0.788 3.212 22 H -0.180 1.180 23 H -0.204 1.204 24 H -0.180 1.180 25 C -0.216 4.216 26 H 0.073 0.927 27 H 0.053 0.947 28 H 0.134 0.866 29 H 0.188 0.812 30 H 0.117 0.883 31 H 0.150 0.850 32 H 0.115 0.885 33 H 0.153 0.847 34 H 0.134 0.866 35 H 0.147 0.853 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 9.727 3.491 16.532 19.496 hybrid contribution -0.712 -0.970 0.373 1.259 sum 9.015 2.522 16.905 19.324 Atomic orbital electron populations 1.23138 0.77613 1.04714 1.00454 1.86036 1.21188 1.23624 1.94146 1.18734 1.01427 0.88477 0.90666 1.17758 1.02157 0.92385 0.80215 1.91487 1.92081 1.82195 1.45220 1.21226 1.03221 0.94067 0.99254 1.21526 1.01770 0.99469 0.94642 1.85802 1.72064 1.15793 1.13826 1.23901 1.07007 1.07914 0.92307 1.20906 0.99227 0.93920 0.97799 1.19069 0.97179 0.93419 0.92005 1.18346 0.97955 0.94472 0.91519 1.20698 1.06899 0.95199 0.98307 1.20888 0.96313 0.99165 0.93499 1.21318 1.07705 0.96118 1.01501 1.17733 0.90447 0.91652 0.92851 1.19432 1.18465 1.21810 0.91733 0.92581 1.26764 0.99403 0.93307 0.96904 1.69722 1.32072 1.39028 1.06593 0.85556 0.79425 0.79231 0.76991 1.18018 1.20429 1.18018 1.21109 1.04692 0.99326 0.96436 0.92671 0.94660 0.86567 0.81166 0.88342 0.85024 0.88470 0.84656 0.86635 0.85294 0.88035 0.89560 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.99 11.13 113.37 1.26 2.25 16 2 O -0.33 -11.14 9.10 -93.52 -0.85 -11.99 16 3 C 0.05 1.78 5.66 22.75 0.13 1.91 16 4 C 0.10 2.69 7.30 22.41 0.16 2.86 16 5 F -0.13 -3.58 17.10 44.97 0.77 -2.81 16 6 C -0.15 -3.53 9.33 22.47 0.21 -3.32 16 7 C -0.06 -1.56 6.10 22.56 0.14 -1.42 16 8 S -0.12 -2.38 22.56 -56.49 -1.27 -3.65 16 9 C -0.14 -1.47 9.14 113.37 1.04 -0.44 16 10 C -0.09 -2.98 9.34 22.63 0.21 -2.77 16 11 C -0.01 -0.50 5.41 -19.98 -0.11 -0.61 16 12 C -0.02 -0.93 5.12 -20.09 -0.10 -1.03 16 13 C -0.19 -7.68 8.95 22.67 0.20 -7.48 16 14 C -0.08 -3.31 10.01 22.18 0.22 -3.09 16 15 C -0.25 -11.63 7.29 22.77 0.17 -11.47 16 16 C 0.08 3.85 5.13 -21.32 -0.11 3.74 16 17 C -0.48 -27.19 9.57 23.46 0.22 -26.96 16 18 H 0.06 3.38 8.06 -2.91 -0.02 3.36 16 19 C 0.05 2.73 5.40 85.25 0.46 3.19 16 20 N -0.85 -46.42 13.93 21.82 0.30 -46.12 16 21 Si 0.96 42.75 24.55 68.60 1.68 44.44 16 22 H -0.25 -10.63 6.45 99.48 0.64 -9.99 16 23 H -0.28 -11.53 7.11 99.48 0.71 -10.82 16 24 H -0.26 -11.64 7.04 99.48 0.70 -10.94 16 25 C -0.20 -9.11 9.34 22.95 0.21 -8.89 16 26 H 0.05 1.37 8.14 -2.38 -0.02 1.36 16 27 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 28 H 0.12 2.70 8.14 -2.39 -0.02 2.68 16 29 H 0.17 2.70 5.85 -2.91 -0.02 2.68 16 30 H 0.10 0.83 7.74 -2.39 -0.02 0.81 16 31 H 0.13 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.10 0.84 7.74 -2.39 -0.02 0.83 16 33 H 0.14 4.36 8.06 -2.91 -0.02 4.33 16 34 H 0.12 4.25 8.05 -2.91 -0.02 4.23 16 35 H 0.13 4.42 8.06 -2.91 -0.02 4.39 16 36 H 0.10 4.76 4.43 -2.91 -0.01 4.75 16 37 H 0.29 14.44 8.30 -92.71 -0.77 13.67 16 38 H 0.10 4.54 8.06 -2.91 -0.02 4.52 16 Total: -1.00 -61.83 338.96 5.97 -55.86 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: 1.02 Total: 17.82 kcal Atomic # 6 Polarization: -57.86 SS G_CDS: 4.32 Total: -53.54 kcal Atomic # 7 Polarization: -46.42 SS G_CDS: 0.30 Total: -46.12 kcal Atomic # 8 Polarization: -11.14 SS G_CDS: -0.85 Total: -11.99 kcal Atomic # 9 Polarization: -3.58 SS G_CDS: 0.77 Total: -2.81 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 1.68 Total: 44.44 kcal Atomic # 16 Polarization: -2.38 SS G_CDS: -1.27 Total: -3.65 kcal Total: -61.83 5.97 -55.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245226061.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.885 kcal (2) G-P(sol) polarization free energy of solvation -61.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.943 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds