Wall clock time and date at job start Tue Mar 31 2020 12:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35875 * 116.99912 * 2 1 4 4 C 1.39483 * 119.77829 * 359.97438 * 3 2 1 5 5 C 1.37929 * 120.62436 * 180.02562 * 4 3 2 6 6 C 1.39203 * 120.15777 * 0.02562 * 5 4 3 7 7 C 1.47791 * 120.21758 * 179.97438 * 6 5 4 8 8 C 1.39589 * 120.12273 * 65.00356 * 7 6 5 9 9 C 1.38584 * 119.78953 * 179.97438 * 8 7 6 10 10 S 1.76202 * 119.97523 * 179.97438 * 9 8 7 11 11 C 1.81398 * 102.99839 * 180.02562 * 10 9 8 12 12 C 1.39153 * 120.05039 * 359.97438 * 9 8 7 13 13 C 1.38206 * 120.25227 * 0.02562 * 12 9 8 14 14 C 1.38227 * 120.21123 * 0.27652 * 13 12 9 15 15 F 1.35096 * 120.02675 * 179.72651 * 14 13 12 16 16 C 1.41916 * 119.55681 * 0.25586 * 6 5 4 17 17 C 1.40878 * 120.30065 * 179.70523 * 16 6 5 18 18 H 1.08003 * 119.99870 * 25.24992 * 17 16 6 19 19 C 1.40024 * 119.99656 * 205.25080 * 17 16 6 20 20 N 1.30800 * 120.00292 * 15.31638 * 19 17 16 21 21 Si 1.86799 * 119.99791 * 195.31225 * 19 17 16 22 22 H 1.48500 * 109.47220 * 90.00217 * 21 19 17 23 23 H 1.48507 * 109.47253 * 209.99990 * 21 19 17 24 24 H 1.48498 * 109.47294 * 329.99987 * 21 19 17 25 25 C 1.37909 * 119.77903 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46727 * 300.00361 * 1 2 3 27 27 H 1.08996 * 109.47048 * 60.00105 * 1 2 3 28 28 H 1.08996 * 109.46770 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.69049 * 359.97438 * 4 3 2 30 30 H 1.07996 * 119.91691 * 179.97438 * 5 4 3 31 31 H 1.07995 * 120.10753 * 359.97438 * 8 7 6 32 32 H 1.09001 * 109.47176 * 299.99275 * 11 10 9 33 33 H 1.08994 * 109.47255 * 59.99893 * 11 10 9 34 34 H 1.09000 * 109.46796 * 179.97438 * 11 10 9 35 35 H 1.07994 * 119.87517 * 179.97438 * 12 9 8 36 36 H 1.08005 * 119.89062 * 179.97438 * 13 12 9 37 37 H 0.97003 * 119.99834 * 180.02562 * 20 19 17 38 38 H 1.08003 * 120.08477 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2817 2.3775 -0.0005 5 6 1.8896 3.6156 -0.0011 6 6 3.2783 3.7128 -0.0016 7 6 3.9311 5.0387 -0.0028 8 6 3.7831 5.8933 1.0910 9 6 4.3988 7.1349 1.0828 10 16 4.2148 8.2178 2.4605 11 6 5.1844 9.6704 1.9701 12 6 5.1621 7.5270 -0.0126 13 6 5.3098 6.6824 -1.0965 14 6 4.6954 5.4442 -1.1023 15 9 4.8378 4.6238 -2.1661 16 6 4.0628 2.5302 -0.0071 17 6 5.4693 2.6104 -0.0140 18 1 5.9623 3.4852 0.3837 19 6 6.2280 1.5559 -0.5366 20 7 5.6561 0.6444 -1.2802 21 14 8.0570 1.4509 -0.1717 22 1 8.2700 0.6613 1.0678 23 1 8.7509 0.7889 -1.3056 24 1 8.6043 2.8190 0.0128 25 6 3.4234 1.2776 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.2037 2.3110 -0.0014 30 1 1.2868 4.5117 -0.0019 31 1 3.1909 5.5880 1.9408 32 1 6.2207 9.3763 1.8040 33 1 4.7734 10.0881 1.0511 34 1 5.1412 10.4197 2.7605 35 1 5.6403 8.4953 -0.0161 36 1 5.9033 6.9928 -1.9438 37 1 6.1817 -0.0863 -1.6419 38 1 4.0095 0.3704 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245747224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:39 Heat of formation + Delta-G solvation = -42.982776 kcal Electronic energy + Delta-G solvation = -23816.883535 eV Core-core repulsion = 20243.840751 eV Total energy + Delta-G solvation = -3573.042784 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -47.92091 -38.92791 -38.22618 -36.26529 -33.64854 -31.57864 -30.23737 -29.74621 -29.23376 -28.01917 -26.21450 -25.23058 -22.65421 -22.20594 -20.99227 -19.99602 -17.77567 -17.21674 -16.72733 -16.17710 -15.78923 -15.22301 -14.83437 -14.82945 -14.76455 -14.56168 -14.45194 -13.79484 -13.52573 -13.20113 -12.83941 -12.78946 -12.61414 -12.44575 -12.11710 -11.92259 -11.74292 -11.48198 -11.25072 -11.18192 -11.12787 -10.70882 -10.43675 -10.17619 -10.01758 -9.83342 -9.64794 -9.21303 -9.06929 -8.37436 -7.54398 -7.11643 -6.96841 -6.70880 -4.48658 1.52441 1.64273 1.65347 2.52213 2.71583 2.89330 3.04582 3.08342 3.18210 3.88125 4.01449 4.29488 4.54763 4.87636 4.98247 4.99010 5.15947 5.30658 5.51257 5.53470 5.62643 5.68159 5.73063 5.80474 5.90164 6.06624 6.25238 6.30417 6.32197 6.55834 6.62963 6.78959 6.85831 6.99327 7.19856 7.35894 7.37112 7.64108 7.73369 7.92099 7.98057 8.30666 8.69431 8.77436 8.85590 10.08629 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010886 B = 0.005213 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.483157 B = 5369.951314 C = 7028.331837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.329 6.329 3 C 0.136 3.864 4 C -0.318 4.318 5 C -0.034 4.034 6 C -0.219 4.219 7 C 0.012 3.988 8 C -0.076 4.076 9 C -0.101 4.101 10 S -0.129 6.129 11 C -0.143 4.143 12 C -0.127 4.127 13 C -0.147 4.147 14 C 0.116 3.884 15 F -0.122 7.122 16 C 0.162 3.838 17 C -0.440 4.440 18 H 0.080 0.920 19 C 0.079 3.921 20 N -0.774 5.774 21 Si 0.906 3.094 22 H -0.265 1.265 23 H -0.276 1.276 24 H -0.260 1.260 25 C -0.193 4.193 26 H 0.045 0.955 27 H 0.045 0.955 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.093 0.907 31 H 0.131 0.869 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.122 0.878 36 H 0.129 0.871 37 H 0.284 0.716 38 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.449 10.072 2.754 10.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.243 6.243 3 C 0.092 3.908 4 C -0.338 4.338 5 C -0.052 4.052 6 C -0.220 4.220 7 C 0.010 3.990 8 C -0.099 4.099 9 C -0.213 4.213 10 S 0.111 5.889 11 C -0.311 4.311 12 C -0.150 4.150 13 C -0.167 4.167 14 C 0.095 3.905 15 F -0.100 7.100 16 C 0.159 3.841 17 C -0.468 4.468 18 H 0.098 0.902 19 C -0.142 4.142 20 N -0.398 5.398 21 Si 0.730 3.270 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.184 1.184 25 C -0.213 4.213 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.115 0.885 30 H 0.111 0.889 31 H 0.148 0.852 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.122 0.878 35 H 0.140 0.860 36 H 0.147 0.853 37 H 0.095 0.905 38 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -1.883 9.597 3.637 10.435 hybrid contribution 1.303 0.082 -1.387 1.905 sum -0.580 9.679 2.250 9.954 Atomic orbital electron populations 1.22764 0.80742 1.01883 1.00543 1.86009 1.19534 1.29069 1.89704 1.19009 0.92463 0.82488 0.96854 1.20330 0.97365 0.92387 1.23733 1.20271 0.92922 0.95390 0.96608 1.18285 0.92202 0.90197 1.21351 1.18741 0.95086 0.94060 0.91150 1.20818 0.99750 0.91306 0.98002 1.21440 1.03860 0.98376 0.97665 1.85355 1.65655 1.13451 1.24435 1.23610 1.02925 0.98765 1.05818 1.20764 1.01094 0.99833 0.93328 1.20854 1.02336 0.93688 0.99859 1.17945 0.98928 0.88252 0.85407 1.91535 1.93739 1.71593 1.53144 1.17145 0.92613 0.88748 0.85606 1.19482 0.91003 1.02482 1.33864 0.90193 1.25955 1.01379 0.94325 0.92535 1.69817 1.38609 1.10069 1.21287 0.86324 0.81723 0.79831 0.79104 1.19008 1.20058 1.18417 1.20560 0.89375 0.99146 1.12240 0.93674 0.93632 0.89904 0.88462 0.88853 0.85151 0.89899 0.89975 0.87847 0.85994 0.85285 0.90522 0.85231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.59 9.80 101.05 0.99 1.58 16 2 O -0.33 -7.24 10.48 -19.35 -0.20 -7.44 16 3 C 0.14 3.29 6.67 -39.24 -0.26 3.03 16 4 C -0.32 -7.10 9.02 -39.23 -0.35 -7.45 16 5 C -0.03 -0.75 9.71 -39.34 -0.38 -1.13 16 6 C -0.22 -5.22 5.05 -104.23 -0.53 -5.74 16 7 C 0.01 0.26 4.37 -104.86 -0.46 -0.19 16 8 C -0.08 -1.41 9.48 -38.95 -0.37 -1.78 16 9 C -0.10 -1.65 6.10 -39.11 -0.24 -1.89 16 10 S -0.13 -1.73 22.56 -107.50 -2.42 -4.16 16 11 C -0.14 -1.31 9.14 101.05 0.92 -0.38 16 12 C -0.13 -1.92 9.36 -39.25 -0.37 -2.29 16 13 C -0.15 -2.48 10.00 -39.60 -0.40 -2.88 16 14 C 0.12 2.41 6.48 -38.96 -0.25 2.15 16 15 F -0.12 -2.83 16.13 2.25 0.04 -2.80 16 16 C 0.16 4.24 5.46 -106.58 -0.58 3.66 16 17 C -0.44 -11.41 7.49 -37.91 -0.28 -11.70 16 18 H 0.08 2.06 7.07 -52.48 -0.37 1.68 16 19 C 0.08 1.95 5.19 -17.32 -0.09 1.86 16 20 N -0.77 -19.89 10.87 55.55 0.60 -19.28 16 21 Si 0.91 18.71 29.59 -169.99 -5.03 13.68 16 22 H -0.27 -5.39 7.11 56.52 0.40 -4.98 16 23 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 24 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 25 C -0.19 -5.11 8.60 -38.79 -0.33 -5.44 16 26 H 0.04 0.68 7.65 -51.93 -0.40 0.28 16 27 H 0.05 0.70 7.64 -51.93 -0.40 0.30 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.10 1.90 6.25 -52.48 -0.33 1.57 16 30 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 31 H 0.13 2.36 8.06 -52.49 -0.42 1.94 16 32 H 0.08 0.72 7.74 -51.92 -0.40 0.32 16 33 H 0.08 0.69 7.74 -51.93 -0.40 0.29 16 34 H 0.10 0.74 8.14 -51.92 -0.42 0.32 16 35 H 0.12 1.45 5.85 -52.49 -0.31 1.14 16 36 H 0.13 1.85 8.06 -52.48 -0.42 1.42 16 37 H 0.28 6.63 8.30 -40.82 -0.34 6.29 16 38 H 0.13 3.59 6.13 -52.48 -0.32 3.26 16 LS Contribution 337.71 15.07 5.09 5.09 Total: -1.00 -28.60 337.71 -9.08 -37.69 By element: Atomic # 1 Polarization: 9.99 SS G_CDS: -4.17 Total: 5.81 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: -2.98 Total: -28.59 kcal Atomic # 7 Polarization: -19.89 SS G_CDS: 0.60 Total: -19.28 kcal Atomic # 8 Polarization: -7.24 SS G_CDS: -0.20 Total: -7.44 kcal Atomic # 9 Polarization: -2.83 SS G_CDS: 0.04 Total: -2.80 kcal Atomic # 14 Polarization: 18.71 SS G_CDS: -5.03 Total: 13.68 kcal Atomic # 16 Polarization: -1.73 SS G_CDS: -2.42 Total: -4.16 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.60 -9.08 -37.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245747224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.296 kcal (2) G-P(sol) polarization free energy of solvation -28.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds