Wall clock time and date at job start Tue Mar 31 2020 12:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35875 * 116.99912 * 2 1 4 4 C 1.39483 * 119.77829 * 359.97438 * 3 2 1 5 5 C 1.37929 * 120.62436 * 180.02562 * 4 3 2 6 6 C 1.39203 * 120.15777 * 0.02562 * 5 4 3 7 7 C 1.47791 * 120.21758 * 179.97438 * 6 5 4 8 8 C 1.39589 * 120.12273 * 65.00356 * 7 6 5 9 9 C 1.38584 * 119.78953 * 179.97438 * 8 7 6 10 10 S 1.76202 * 119.97523 * 179.97438 * 9 8 7 11 11 C 1.81398 * 102.99839 * 180.02562 * 10 9 8 12 12 C 1.39153 * 120.05039 * 359.97438 * 9 8 7 13 13 C 1.38206 * 120.25227 * 0.02562 * 12 9 8 14 14 C 1.38227 * 120.21123 * 0.27652 * 13 12 9 15 15 F 1.35096 * 120.02675 * 179.72651 * 14 13 12 16 16 C 1.41916 * 119.55681 * 0.25586 * 6 5 4 17 17 C 1.40878 * 120.30065 * 179.70523 * 16 6 5 18 18 H 1.08003 * 119.99870 * 25.24992 * 17 16 6 19 19 C 1.40024 * 119.99656 * 205.25080 * 17 16 6 20 20 N 1.30800 * 120.00292 * 15.31638 * 19 17 16 21 21 Si 1.86799 * 119.99791 * 195.31225 * 19 17 16 22 22 H 1.48500 * 109.47220 * 90.00217 * 21 19 17 23 23 H 1.48507 * 109.47253 * 209.99990 * 21 19 17 24 24 H 1.48498 * 109.47294 * 329.99987 * 21 19 17 25 25 C 1.37909 * 119.77903 * 180.02562 * 3 2 1 26 26 H 1.09002 * 109.46727 * 300.00361 * 1 2 3 27 27 H 1.08996 * 109.47048 * 60.00105 * 1 2 3 28 28 H 1.08996 * 109.46770 * 180.02562 * 1 2 3 29 29 H 1.08005 * 119.69049 * 359.97438 * 4 3 2 30 30 H 1.07996 * 119.91691 * 179.97438 * 5 4 3 31 31 H 1.07995 * 120.10753 * 359.97438 * 8 7 6 32 32 H 1.09001 * 109.47176 * 299.99275 * 11 10 9 33 33 H 1.08994 * 109.47255 * 59.99893 * 11 10 9 34 34 H 1.09000 * 109.46796 * 179.97438 * 11 10 9 35 35 H 1.07994 * 119.87517 * 179.97438 * 12 9 8 36 36 H 1.08005 * 119.89062 * 179.97438 * 13 12 9 37 37 H 0.97003 * 119.99834 * 180.02562 * 20 19 17 38 38 H 1.08003 * 120.08477 * 359.97438 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0459 1.2107 0.0000 4 6 1.2817 2.3775 -0.0005 5 6 1.8896 3.6156 -0.0011 6 6 3.2783 3.7128 -0.0016 7 6 3.9311 5.0387 -0.0028 8 6 3.7831 5.8933 1.0910 9 6 4.3988 7.1349 1.0828 10 16 4.2148 8.2178 2.4605 11 6 5.1844 9.6704 1.9701 12 6 5.1621 7.5270 -0.0126 13 6 5.3098 6.6824 -1.0965 14 6 4.6954 5.4442 -1.1023 15 9 4.8378 4.6238 -2.1661 16 6 4.0628 2.5302 -0.0071 17 6 5.4693 2.6104 -0.0140 18 1 5.9623 3.4852 0.3837 19 6 6.2280 1.5559 -0.5366 20 7 5.6561 0.6444 -1.2802 21 14 8.0570 1.4509 -0.1717 22 1 8.2700 0.6613 1.0678 23 1 8.7509 0.7889 -1.3056 24 1 8.6043 2.8190 0.0128 25 6 3.4234 1.2776 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.2037 2.3110 -0.0014 30 1 1.2868 4.5117 -0.0019 31 1 3.1909 5.5880 1.9408 32 1 6.2207 9.3763 1.8040 33 1 4.7734 10.0881 1.0511 34 1 5.1412 10.4197 2.7605 35 1 5.6403 8.4953 -0.0161 36 1 5.9033 6.9928 -1.9438 37 1 6.1817 -0.0863 -1.6419 38 1 4.0095 0.3704 -0.0005 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245747224.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:39 Heat of formation + Delta-G solvation = -56.819407 kcal Electronic energy + Delta-G solvation = -23817.483536 eV Core-core repulsion = 20243.840751 eV Total energy + Delta-G solvation = -3573.642785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -49.55920 -40.61435 -39.70110 -37.95883 -35.48141 -33.07985 -31.73805 -31.45187 -30.31822 -29.33599 -27.70954 -27.03059 -24.15347 -23.64578 -22.78941 -21.64382 -19.56638 -18.60101 -18.11045 -17.99534 -17.28159 -16.90576 -16.45994 -16.36219 -16.25545 -16.12942 -15.62542 -15.01272 -14.83962 -14.59127 -14.52337 -14.18846 -14.08696 -13.65356 -13.57557 -13.31117 -13.23239 -13.13080 -12.85518 -12.72914 -12.63353 -12.39450 -12.02324 -11.70095 -11.55600 -11.40912 -11.15844 -11.03416 -10.37831 -9.83894 -9.43068 -8.81123 -8.53627 -8.23853 -6.40951 0.10916 0.25643 0.59902 0.93535 1.07135 1.33165 1.46210 1.48941 1.55157 2.16164 2.57858 2.68053 2.76152 3.50519 3.62287 3.87765 3.97479 4.18361 4.30141 4.35226 4.35691 4.44133 4.45829 4.49290 4.54148 4.73181 4.84683 4.89293 4.96291 5.02429 5.09746 5.18803 5.20909 5.28122 5.46177 5.51544 5.78903 5.86728 5.97248 6.07486 6.12690 6.43201 6.85965 6.88982 7.01521 8.27702 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010886 B = 0.005213 C = 0.003983 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2571.483157 B = 5369.951314 C = 7028.331837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.350 6.350 3 C 0.131 3.869 4 C -0.315 4.315 5 C -0.041 4.041 6 C -0.224 4.224 7 C -0.015 4.015 8 C -0.086 4.086 9 C -0.098 4.098 10 S -0.143 6.143 11 C -0.136 4.136 12 C -0.113 4.113 13 C -0.137 4.137 14 C 0.079 3.921 15 F -0.148 7.148 16 C 0.135 3.865 17 C -0.463 4.463 18 H 0.072 0.928 19 C 0.038 3.962 20 N -0.811 5.811 21 Si 0.973 3.027 22 H -0.259 1.259 23 H -0.265 1.265 24 H -0.258 1.258 25 C -0.230 4.230 26 H 0.058 0.942 27 H 0.053 0.947 28 H 0.116 0.884 29 H 0.129 0.871 30 H 0.120 0.880 31 H 0.127 0.873 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.128 0.872 35 H 0.166 0.834 36 H 0.157 0.843 37 H 0.289 0.711 38 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.218 13.086 3.466 13.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.265 6.265 3 C 0.087 3.913 4 C -0.335 4.335 5 C -0.059 4.059 6 C -0.225 4.225 7 C -0.017 4.017 8 C -0.109 4.109 9 C -0.210 4.210 10 S 0.098 5.902 11 C -0.304 4.304 12 C -0.136 4.136 13 C -0.157 4.157 14 C 0.058 3.942 15 F -0.127 7.127 16 C 0.133 3.867 17 C -0.492 4.492 18 H 0.090 0.910 19 C -0.179 4.179 20 N -0.436 5.436 21 Si 0.793 3.207 22 H -0.184 1.184 23 H -0.189 1.189 24 H -0.181 1.181 25 C -0.250 4.250 26 H 0.077 0.923 27 H 0.072 0.928 28 H 0.135 0.865 29 H 0.147 0.853 30 H 0.138 0.862 31 H 0.145 0.855 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.146 0.854 35 H 0.183 0.817 36 H 0.174 0.826 37 H 0.100 0.900 38 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.682 12.617 4.361 13.455 hybrid contribution 1.070 -0.680 -1.524 1.983 sum -0.611 11.937 2.837 12.285 Atomic orbital electron populations 1.23158 0.77541 1.04585 1.01540 1.85973 1.22857 1.28244 1.89436 1.19110 0.92144 0.83953 0.96099 1.20665 0.98870 0.91621 1.22328 1.20645 0.92831 0.96532 0.95936 1.18652 0.93015 0.91051 1.19826 1.18732 0.96639 0.93637 0.92720 1.20790 1.00592 0.92321 0.97205 1.21711 1.02328 0.97921 0.99066 1.85498 1.66663 1.14979 1.23060 1.23808 1.02542 0.96646 1.07439 1.21246 0.99691 1.00904 0.91774 1.21182 1.01234 0.92064 1.01264 1.18314 1.01000 0.89748 0.85158 1.91458 1.94195 1.72741 1.54303 1.17483 0.93393 0.89604 0.86259 1.19531 0.91382 1.02985 1.35256 0.91018 1.26766 1.05682 0.93615 0.91845 1.69892 1.40365 1.10889 1.22422 0.85341 0.76256 0.79852 0.79258 1.18360 1.18936 1.18147 1.20511 0.90666 0.98595 1.15270 0.92305 0.92809 0.86542 0.85291 0.86224 0.85466 0.88800 0.88438 0.85354 0.81696 0.82566 0.90042 0.87704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 9.80 113.37 1.11 1.92 16 2 O -0.35 -15.69 10.48 -92.15 -0.97 -16.66 16 3 C 0.13 6.58 6.67 22.49 0.15 6.73 16 4 C -0.32 -14.09 9.02 22.50 0.20 -13.89 16 5 C -0.04 -1.87 9.71 22.43 0.22 -1.65 16 6 C -0.22 -11.13 5.05 -19.61 -0.10 -11.23 16 7 C -0.01 -0.64 4.37 -20.02 -0.09 -0.73 16 8 C -0.09 -3.21 9.48 22.68 0.22 -2.99 16 9 C -0.10 -2.98 6.10 22.57 0.14 -2.85 16 10 S -0.14 -3.40 22.56 -56.49 -1.27 -4.67 16 11 C -0.14 -1.81 9.14 113.37 1.04 -0.77 16 12 C -0.11 -3.05 9.36 22.48 0.21 -2.84 16 13 C -0.14 -4.40 10.00 22.26 0.22 -4.17 16 14 C 0.08 3.34 6.48 22.67 0.15 3.49 16 15 F -0.15 -7.23 16.13 44.97 0.73 -6.50 16 16 C 0.14 7.53 5.46 -21.13 -0.12 7.41 16 17 C -0.46 -25.43 7.49 23.35 0.17 -25.26 16 18 H 0.07 3.90 7.07 -2.91 -0.02 3.88 16 19 C 0.04 1.96 5.19 85.28 0.44 2.40 16 20 N -0.81 -44.18 10.87 21.84 0.24 -43.94 16 21 Si 0.97 39.62 29.59 68.60 2.03 41.65 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.48 16 23 H -0.27 -10.22 7.11 99.48 0.71 -9.51 16 24 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 25 C -0.23 -12.97 8.60 22.78 0.20 -12.77 16 26 H 0.06 1.65 7.65 -2.39 -0.02 1.63 16 27 H 0.05 1.57 7.64 -2.39 -0.02 1.55 16 28 H 0.12 2.77 8.14 -2.39 -0.02 2.75 16 29 H 0.13 4.81 6.25 -2.91 -0.02 4.79 16 30 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.13 4.69 8.06 -2.91 -0.02 4.66 16 32 H 0.09 1.12 7.74 -2.39 -0.02 1.10 16 33 H 0.10 1.08 7.74 -2.39 -0.02 1.06 16 34 H 0.13 1.16 8.14 -2.39 -0.02 1.14 16 35 H 0.17 3.01 5.85 -2.91 -0.02 2.99 16 36 H 0.16 4.05 8.06 -2.91 -0.02 4.03 16 37 H 0.29 14.26 8.30 -92.71 -0.77 13.49 16 38 H 0.11 6.29 6.13 -2.91 -0.02 6.27 16 Total: -1.00 -67.86 337.71 6.01 -61.85 By element: Atomic # 1 Polarization: 24.36 SS G_CDS: 1.10 Total: 25.45 kcal Atomic # 6 Polarization: -61.35 SS G_CDS: 4.16 Total: -57.19 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: 0.24 Total: -43.94 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -0.97 Total: -16.66 kcal Atomic # 9 Polarization: -7.23 SS G_CDS: 0.73 Total: -6.50 kcal Atomic # 14 Polarization: 39.62 SS G_CDS: 2.03 Total: 41.65 kcal Atomic # 16 Polarization: -3.40 SS G_CDS: -1.27 Total: -4.67 kcal Total: -67.86 6.01 -61.85 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245747224.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.028 kcal (2) G-P(sol) polarization free energy of solvation -67.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds