Wall clock time and date at job start Tue Mar 31 2020 12:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35608 * 116.99779 * 2 1 4 4 C 1.38513 * 120.08077 * 359.97438 * 3 2 1 5 5 C 1.38036 * 120.30372 * 180.02562 * 4 3 2 6 6 C 1.39942 * 120.47170 * 0.02562 * 5 4 3 7 7 C 1.48356 * 119.91960 * 179.97438 * 6 5 4 8 8 C 1.39256 * 120.09957 * 310.25513 * 7 6 5 9 9 C 1.38697 * 119.82207 * 180.29540 * 8 7 6 10 10 S 1.76199 * 119.99332 * 179.74495 * 9 8 7 11 11 C 1.81410 * 103.00038 * 179.72399 * 10 9 8 12 12 C 1.39041 * 120.01227 * 359.47176 * 9 8 7 13 13 C 1.38162 * 120.19193 * 0.22841 * 12 9 8 14 14 C 1.38290 * 120.17960 * 0.05012 * 13 12 9 15 15 F 1.35101 * 120.00531 * 179.97438 * 14 13 12 16 16 C 1.38615 * 120.15522 * 0.26884 * 6 5 4 17 17 C 1.40524 * 119.69187 * 359.44150 * 16 6 5 18 18 C 1.41180 * 120.23060 * 180.26584 * 17 16 6 19 19 H 1.07997 * 120.00540 * 205.31942 * 18 17 16 20 20 C 1.39915 * 119.99933 * 25.32715 * 18 17 16 21 21 N 1.30874 * 119.99716 * 17.83481 * 20 18 17 22 22 Si 1.86794 * 119.99775 * 197.84187 * 20 18 17 23 23 H 1.48500 * 109.47266 * 94.51092 * 22 20 18 24 24 H 1.48497 * 109.47042 * 214.50972 * 22 20 18 25 25 H 1.48502 * 109.47301 * 334.50648 * 22 20 18 26 26 H 1.09005 * 109.46678 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47486 * 300.00420 * 1 2 3 28 28 H 1.09001 * 109.46719 * 60.00754 * 1 2 3 29 29 H 1.07997 * 119.85167 * 0.02583 * 4 3 2 30 30 H 1.07995 * 119.76166 * 180.02562 * 5 4 3 31 31 H 1.08002 * 120.08657 * 0.04577 * 8 7 6 32 32 H 1.09000 * 109.47076 * 179.97438 * 11 10 9 33 33 H 1.08996 * 109.46905 * 300.00031 * 11 10 9 34 34 H 1.09004 * 109.46385 * 59.99857 * 11 10 9 35 35 H 1.08001 * 119.90798 * 180.25359 * 12 9 8 36 36 H 1.07995 * 119.91088 * 180.02562 * 13 12 9 37 37 H 1.08006 * 120.15364 * 179.70688 * 16 6 5 38 38 H 0.97003 * 119.99878 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2918 2.3710 -0.0005 5 6 1.9137 3.6034 -0.0011 6 6 3.3102 3.6936 -0.0016 7 6 3.9657 5.0245 -0.0028 8 6 3.5756 5.9943 -0.9228 9 6 4.1966 7.2345 -0.9227 10 16 3.7111 8.4627 -2.0892 11 6 4.7877 9.8638 -1.6784 12 6 5.1981 7.5108 0.0013 13 6 5.5813 6.5511 0.9184 14 6 4.9715 5.3099 0.9217 15 9 5.3493 4.3739 1.8197 16 6 4.0823 2.5424 -0.0073 17 6 3.4563 1.2844 -0.0005 18 6 4.2318 0.1046 -0.0005 19 1 3.8201 -0.8123 -0.3957 20 6 5.5336 0.1231 0.5118 21 7 5.9151 1.1005 1.2940 22 14 6.7271 -1.2471 0.0791 23 1 7.5490 -0.8376 -1.0879 24 1 7.6141 -1.5157 1.2393 25 1 5.9670 -2.4775 -0.2581 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 0.2134 2.3132 -0.0005 30 1 1.3182 4.5043 -0.0011 31 1 2.7943 5.7800 -1.6370 32 1 4.5723 10.6962 -2.3483 33 1 4.6078 10.1703 -0.6480 34 1 5.8302 9.5665 -1.7923 35 1 5.6777 8.4785 0.0025 36 1 6.3595 6.7707 1.6343 37 1 5.1601 2.6121 -0.0125 38 1 6.8178 1.1136 1.6489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245747264.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:43 Heat of formation + Delta-G solvation = -40.598805 kcal Electronic energy + Delta-G solvation = -23554.907816 eV Core-core repulsion = 19981.968409 eV Total energy + Delta-G solvation = -3572.939407 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -48.12309 -38.96947 -38.31340 -36.08140 -33.76764 -31.67980 -30.41326 -29.82105 -29.28189 -27.67992 -26.45083 -25.11741 -22.78084 -22.44831 -20.91336 -20.06471 -17.73288 -17.05625 -16.86412 -16.43465 -15.98482 -15.32536 -14.89160 -14.80334 -14.65840 -14.52134 -14.38450 -13.90490 -13.66037 -13.20480 -12.92873 -12.76421 -12.67285 -12.56906 -12.30003 -11.99720 -11.71199 -11.53122 -11.21423 -11.15273 -10.93506 -10.75681 -10.45520 -10.29614 -10.05778 -9.85166 -9.49704 -9.24643 -9.15320 -8.66684 -7.52851 -7.28060 -6.91644 -6.64359 -4.23544 1.27598 1.42211 1.50537 2.38514 2.72139 2.86392 3.12068 3.16904 3.19016 3.82853 3.99215 4.47686 4.59398 4.69224 4.88520 4.88844 4.98116 5.10580 5.35194 5.46143 5.52711 5.61202 5.74695 5.81760 5.95854 6.02198 6.06560 6.13063 6.27040 6.35418 6.39865 6.59871 6.80941 7.09000 7.12611 7.26392 7.32814 7.63016 7.67562 7.92424 8.14934 8.36299 8.67852 8.84470 9.03579 10.23981 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.004218 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.886005 B = 6635.985549 C = 8029.062407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.311 6.311 3 C 0.021 3.979 4 C -0.179 4.179 5 C -0.188 4.188 6 C -0.080 4.080 7 C -0.023 4.023 8 C -0.068 4.068 9 C -0.102 4.102 10 S -0.123 6.123 11 C -0.144 4.144 12 C -0.121 4.121 13 C -0.142 4.142 14 C 0.108 3.892 15 F -0.115 7.115 16 C -0.114 4.114 17 C 0.096 3.904 18 C -0.446 4.446 19 H 0.083 0.917 20 C 0.073 3.927 21 N -0.786 5.786 22 Si 0.907 3.093 23 H -0.269 1.269 24 H -0.278 1.278 25 H -0.262 1.262 26 H 0.082 0.918 27 H 0.041 0.959 28 H 0.040 0.960 29 H 0.099 0.901 30 H 0.093 0.907 31 H 0.135 0.865 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.133 0.867 37 H 0.128 0.872 38 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.232 12.022 -2.835 12.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.225 6.225 3 C -0.023 4.023 4 C -0.198 4.198 5 C -0.207 4.207 6 C -0.081 4.081 7 C -0.026 4.026 8 C -0.091 4.091 9 C -0.214 4.214 10 S 0.117 5.883 11 C -0.312 4.312 12 C -0.145 4.145 13 C -0.163 4.163 14 C 0.087 3.913 15 F -0.093 7.093 16 C -0.134 4.134 17 C 0.093 3.907 18 C -0.476 4.476 19 H 0.101 0.899 20 C -0.145 4.145 21 N -0.411 5.411 22 Si 0.732 3.268 23 H -0.194 1.194 24 H -0.204 1.204 25 H -0.185 1.185 26 H 0.100 0.900 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.117 0.883 30 H 0.111 0.889 31 H 0.153 0.847 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.143 0.857 36 H 0.151 0.849 37 H 0.146 0.854 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -1.743 11.942 -3.562 12.583 hybrid contribution 1.338 -0.440 1.152 1.820 sum -0.405 11.502 -2.409 11.758 Atomic orbital electron populations 1.22750 0.81678 1.01794 0.99975 1.85965 1.18274 1.28244 1.90001 1.19338 0.92381 0.82638 1.07955 1.20519 0.97477 0.92636 1.09180 1.20056 0.92444 0.95507 1.12709 1.18201 0.92997 0.89899 1.06959 1.19074 0.94683 0.94936 0.93879 1.20722 0.99584 0.90304 0.98468 1.21493 1.01373 0.97930 1.00597 1.85417 1.50833 1.08279 1.43736 1.23639 1.02516 0.99241 1.05850 1.20822 0.98087 0.99443 0.96106 1.20904 1.01794 0.92485 1.01112 1.17869 0.96422 0.86855 0.90188 1.91632 1.89631 1.63539 1.64466 1.21146 0.99356 0.89441 1.03447 1.16939 0.87303 0.93818 0.92642 1.19411 0.96755 0.96563 1.34826 0.89852 1.25902 0.98856 0.96915 0.92828 1.69856 1.19139 1.30468 1.21603 0.86310 0.79993 0.81660 0.78875 1.19430 1.20352 1.18538 0.89993 0.94089 0.94171 0.88275 0.88860 0.84718 0.87676 0.89866 0.89833 0.85664 0.84878 0.85423 0.90849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 9.81 101.05 0.99 1.57 16 2 O -0.31 -7.19 9.77 -18.52 -0.18 -7.38 16 3 C 0.02 0.53 6.72 -38.29 -0.26 0.28 16 4 C -0.18 -4.01 9.01 -39.55 -0.36 -4.36 16 5 C -0.19 -4.15 9.49 -39.02 -0.37 -4.52 16 6 C -0.08 -1.86 5.31 -104.96 -0.56 -2.42 16 7 C -0.02 -0.46 5.47 -104.86 -0.57 -1.04 16 8 C -0.07 -1.18 9.23 -39.03 -0.36 -1.54 16 9 C -0.10 -1.52 6.10 -39.11 -0.24 -1.76 16 10 S -0.12 -1.51 22.56 -107.50 -2.43 -3.94 16 11 C -0.14 -1.17 9.15 101.05 0.92 -0.24 16 12 C -0.12 -1.67 9.36 -39.31 -0.37 -2.04 16 13 C -0.14 -2.21 10.01 -39.59 -0.40 -2.60 16 14 C 0.11 2.11 7.15 -39.07 -0.28 1.83 16 15 F -0.11 -2.54 15.89 2.25 0.04 -2.51 16 16 C -0.11 -2.96 7.48 -38.58 -0.29 -3.25 16 17 C 0.10 2.58 5.57 -106.73 -0.59 1.99 16 18 C -0.45 -12.09 8.71 -37.84 -0.33 -12.41 16 19 H 0.08 2.25 7.65 -52.49 -0.40 1.84 16 20 C 0.07 1.86 5.13 -17.33 -0.09 1.77 16 21 N -0.79 -20.46 11.01 55.55 0.61 -19.85 16 22 Si 0.91 19.10 29.60 -169.99 -5.03 14.07 16 23 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 H -0.26 -5.48 7.11 56.52 0.40 -5.08 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.04 0.66 7.66 -51.93 -0.40 0.26 16 28 H 0.04 0.63 7.65 -51.93 -0.40 0.23 16 29 H 0.10 1.92 6.27 -52.49 -0.33 1.59 16 30 H 0.09 1.84 8.02 -52.49 -0.42 1.42 16 31 H 0.13 2.26 8.03 -52.49 -0.42 1.84 16 32 H 0.10 0.66 8.14 -51.92 -0.42 0.23 16 33 H 0.08 0.62 7.74 -51.93 -0.40 0.21 16 34 H 0.08 0.63 7.74 -51.92 -0.40 0.23 16 35 H 0.13 1.32 5.86 -52.49 -0.31 1.01 16 36 H 0.13 1.72 8.06 -52.49 -0.42 1.30 16 37 H 0.13 3.45 5.94 -52.48 -0.31 3.14 16 38 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 LS Contribution 339.03 15.07 5.11 5.11 Total: -1.00 -29.21 339.03 -9.22 -38.43 By element: Atomic # 1 Polarization: 9.01 SS G_CDS: -4.19 Total: 4.82 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -3.14 Total: -28.76 kcal Atomic # 7 Polarization: -20.46 SS G_CDS: 0.61 Total: -19.85 kcal Atomic # 8 Polarization: -7.19 SS G_CDS: -0.18 Total: -7.38 kcal Atomic # 9 Polarization: -2.54 SS G_CDS: 0.04 Total: -2.51 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.03 Total: 14.07 kcal Atomic # 16 Polarization: -1.51 SS G_CDS: -2.43 Total: -3.94 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.21 -9.22 -38.43 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245747264.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.170 kcal (2) G-P(sol) polarization free energy of solvation -29.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.381 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds