Wall clock time and date at job start Tue Mar 31 2020 12:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35608 * 116.99779 * 2 1 4 4 C 1.38513 * 120.08077 * 359.97438 * 3 2 1 5 5 C 1.38036 * 120.30372 * 180.02562 * 4 3 2 6 6 C 1.39942 * 120.47170 * 0.02562 * 5 4 3 7 7 C 1.48356 * 119.91960 * 179.97438 * 6 5 4 8 8 C 1.39256 * 120.09957 * 310.25513 * 7 6 5 9 9 C 1.38697 * 119.82207 * 180.29540 * 8 7 6 10 10 S 1.76199 * 119.99332 * 179.74495 * 9 8 7 11 11 C 1.81410 * 103.00038 * 179.72399 * 10 9 8 12 12 C 1.39041 * 120.01227 * 359.47176 * 9 8 7 13 13 C 1.38162 * 120.19193 * 0.22841 * 12 9 8 14 14 C 1.38290 * 120.17960 * 0.05012 * 13 12 9 15 15 F 1.35101 * 120.00531 * 179.97438 * 14 13 12 16 16 C 1.38615 * 120.15522 * 0.26884 * 6 5 4 17 17 C 1.40524 * 119.69187 * 359.44150 * 16 6 5 18 18 C 1.41180 * 120.23060 * 180.26584 * 17 16 6 19 19 H 1.07997 * 120.00540 * 205.31942 * 18 17 16 20 20 C 1.39915 * 119.99933 * 25.32715 * 18 17 16 21 21 N 1.30874 * 119.99716 * 17.83481 * 20 18 17 22 22 Si 1.86794 * 119.99775 * 197.84187 * 20 18 17 23 23 H 1.48500 * 109.47266 * 94.51092 * 22 20 18 24 24 H 1.48497 * 109.47042 * 214.50972 * 22 20 18 25 25 H 1.48502 * 109.47301 * 334.50648 * 22 20 18 26 26 H 1.09005 * 109.46678 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.47486 * 300.00420 * 1 2 3 28 28 H 1.09001 * 109.46719 * 60.00754 * 1 2 3 29 29 H 1.07997 * 119.85167 * 0.02583 * 4 3 2 30 30 H 1.07995 * 119.76166 * 180.02562 * 5 4 3 31 31 H 1.08002 * 120.08657 * 0.04577 * 8 7 6 32 32 H 1.09000 * 109.47076 * 179.97438 * 11 10 9 33 33 H 1.08996 * 109.46905 * 300.00031 * 11 10 9 34 34 H 1.09004 * 109.46385 * 59.99857 * 11 10 9 35 35 H 1.08001 * 119.90798 * 180.25359 * 12 9 8 36 36 H 1.07995 * 119.91088 * 180.02562 * 13 12 9 37 37 H 1.08006 * 120.15364 * 179.70688 * 16 6 5 38 38 H 0.97003 * 119.99878 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2083 0.0000 4 6 1.2918 2.3710 -0.0005 5 6 1.9137 3.6034 -0.0011 6 6 3.3102 3.6936 -0.0016 7 6 3.9657 5.0245 -0.0028 8 6 3.5756 5.9943 -0.9228 9 6 4.1966 7.2345 -0.9227 10 16 3.7111 8.4627 -2.0892 11 6 4.7877 9.8638 -1.6784 12 6 5.1981 7.5108 0.0013 13 6 5.5813 6.5511 0.9184 14 6 4.9715 5.3099 0.9217 15 9 5.3493 4.3739 1.8197 16 6 4.0823 2.5424 -0.0073 17 6 3.4563 1.2844 -0.0005 18 6 4.2318 0.1046 -0.0005 19 1 3.8201 -0.8123 -0.3957 20 6 5.5336 0.1231 0.5118 21 7 5.9151 1.1005 1.2940 22 14 6.7271 -1.2471 0.0791 23 1 7.5490 -0.8376 -1.0879 24 1 7.6141 -1.5157 1.2393 25 1 5.9670 -2.4775 -0.2581 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 0.2134 2.3132 -0.0005 30 1 1.3182 4.5043 -0.0011 31 1 2.7943 5.7800 -1.6370 32 1 4.5723 10.6962 -2.3483 33 1 4.6078 10.1703 -0.6480 34 1 5.8302 9.5665 -1.7923 35 1 5.6777 8.4785 0.0025 36 1 6.3595 6.7707 1.6343 37 1 5.1601 2.6121 -0.0125 38 1 6.8178 1.1136 1.6489 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245747264.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:31:42 Heat of formation + Delta-G solvation = -54.985986 kcal Electronic energy + Delta-G solvation = -23555.531691 eV Core-core repulsion = 19981.968409 eV Total energy + Delta-G solvation = -3573.563282 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.67371 -40.60383 -39.77266 -37.79034 -35.61603 -33.16253 -31.75596 -31.58301 -30.22301 -29.05479 -27.99107 -26.95606 -24.17725 -23.84393 -22.70252 -21.70198 -19.40659 -18.52383 -18.32668 -18.05374 -17.42305 -16.99347 -16.47945 -16.25165 -16.20847 -15.96958 -15.65881 -15.04248 -14.82790 -14.60258 -14.50997 -14.25063 -14.14569 -13.68224 -13.60013 -13.41453 -13.27762 -13.10481 -12.85320 -12.69649 -12.54301 -12.38624 -12.11424 -11.68287 -11.59936 -11.28705 -11.18414 -11.03089 -10.47701 -10.08115 -9.42985 -8.76558 -8.50291 -8.28528 -6.22240 -0.07604 0.11856 0.54654 0.92618 1.06453 1.36894 1.48689 1.50784 1.51094 2.22870 2.46316 2.74769 2.89708 3.38711 3.60295 3.73100 3.82890 4.07558 4.29606 4.32591 4.34010 4.37480 4.41118 4.49094 4.56361 4.70067 4.74410 4.81479 4.90678 4.99602 5.07328 5.09601 5.17368 5.25467 5.39737 5.47274 5.71439 5.79380 5.89487 6.07269 6.27423 6.45851 6.77590 6.91301 7.20098 8.37648 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.013459 B = 0.004218 C = 0.003486 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2079.886005 B = 6635.985549 C = 8029.062407 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.338 6.338 3 C 0.007 3.993 4 C -0.180 4.180 5 C -0.184 4.184 6 C -0.083 4.083 7 C -0.053 4.053 8 C -0.075 4.075 9 C -0.098 4.098 10 S -0.137 6.137 11 C -0.138 4.138 12 C -0.105 4.105 13 C -0.131 4.131 14 C 0.072 3.928 15 F -0.142 7.142 16 C -0.135 4.135 17 C 0.058 3.942 18 C -0.485 4.485 19 H 0.070 0.930 20 C 0.034 3.966 21 N -0.816 5.816 22 Si 0.978 3.022 23 H -0.263 1.263 24 H -0.267 1.267 25 H -0.261 1.261 26 H 0.112 0.888 27 H 0.050 0.950 28 H 0.055 0.945 29 H 0.133 0.867 30 H 0.121 0.879 31 H 0.135 0.865 32 H 0.128 0.872 33 H 0.097 0.903 34 H 0.095 0.905 35 H 0.169 0.831 36 H 0.161 0.839 37 H 0.105 0.895 38 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.289 14.932 -3.472 15.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.253 6.253 3 C -0.037 4.037 4 C -0.198 4.198 5 C -0.203 4.203 6 C -0.084 4.084 7 C -0.055 4.055 8 C -0.098 4.098 9 C -0.210 4.210 10 S 0.104 5.896 11 C -0.306 4.306 12 C -0.128 4.128 13 C -0.151 4.151 14 C 0.050 3.950 15 F -0.121 7.121 16 C -0.155 4.155 17 C 0.055 3.945 18 C -0.515 4.515 19 H 0.088 0.912 20 C -0.181 4.181 21 N -0.442 5.442 22 Si 0.799 3.201 23 H -0.187 1.187 24 H -0.191 1.191 25 H -0.185 1.185 26 H 0.130 0.870 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.151 0.849 30 H 0.139 0.861 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.116 0.884 34 H 0.114 0.886 35 H 0.187 0.813 36 H 0.178 0.822 37 H 0.123 0.877 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -1.832 14.870 -4.209 15.562 hybrid contribution 1.208 -1.068 1.281 2.059 sum -0.624 13.802 -2.928 14.123 Atomic orbital electron populations 1.23114 0.78500 1.04289 1.01086 1.85910 1.21627 1.27800 1.89994 1.19499 0.92199 0.84081 1.07967 1.20877 0.99124 0.91828 1.07997 1.20474 0.92395 0.96576 1.10844 1.18521 0.93664 0.90902 1.05307 1.19020 0.96159 0.94340 0.96012 1.20714 1.00109 0.90988 0.97999 1.21769 1.00571 0.97760 1.00943 1.85572 1.52139 1.09238 1.42604 1.23840 1.01961 0.97447 1.07365 1.21316 0.96846 1.00505 0.94182 1.21222 1.01433 0.90870 1.01614 1.18283 0.97820 0.88112 0.90766 1.91556 1.90070 1.64932 1.65497 1.21010 0.98579 0.90401 1.05471 1.17351 0.88962 0.94340 0.93803 1.19507 0.98459 0.96394 1.37137 0.91176 1.26685 0.99889 0.99405 0.92128 1.69934 1.19672 1.32229 1.22409 0.85261 0.77574 0.78371 0.78926 1.18727 1.19134 1.18488 0.87012 0.93103 0.92655 0.84916 0.86114 0.84747 0.85325 0.88381 0.88601 0.81323 0.82162 0.87670 0.90421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.82 9.81 113.37 1.11 1.93 16 2 O -0.34 -16.08 9.77 -89.19 -0.87 -16.95 16 3 C 0.01 0.38 6.72 23.11 0.16 0.53 16 4 C -0.18 -8.05 9.01 22.29 0.20 -7.85 16 5 C -0.18 -8.19 9.49 22.63 0.21 -7.97 16 6 C -0.08 -4.04 5.31 -20.08 -0.11 -4.15 16 7 C -0.05 -2.18 5.47 -20.02 -0.11 -2.29 16 8 C -0.07 -2.57 9.23 22.62 0.21 -2.36 16 9 C -0.10 -2.70 6.10 22.57 0.14 -2.57 16 10 S -0.14 -2.91 22.56 -56.49 -1.27 -4.19 16 11 C -0.14 -1.53 9.15 113.37 1.04 -0.49 16 12 C -0.11 -2.53 9.36 22.44 0.21 -2.32 16 13 C -0.13 -3.84 10.01 22.26 0.22 -3.61 16 14 C 0.07 2.86 7.15 22.60 0.16 3.02 16 15 F -0.14 -6.67 15.89 44.97 0.71 -5.96 16 16 C -0.13 -7.46 7.48 22.92 0.17 -7.29 16 17 C 0.06 3.32 5.57 -21.23 -0.12 3.21 16 18 C -0.49 -28.08 8.71 23.40 0.20 -27.87 16 19 H 0.07 4.06 7.65 -2.91 -0.02 4.04 16 20 C 0.03 1.81 5.13 85.24 0.44 2.24 16 21 N -0.82 -45.14 11.01 21.82 0.24 -44.90 16 22 Si 0.98 40.91 29.60 68.60 2.03 42.94 16 23 H -0.26 -10.59 7.11 99.48 0.71 -9.88 16 24 H -0.27 -10.54 7.11 99.48 0.71 -9.84 16 25 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 26 H 0.11 2.94 8.14 -2.38 -0.02 2.92 16 27 H 0.05 1.56 7.66 -2.39 -0.02 1.54 16 28 H 0.05 1.64 7.65 -2.39 -0.02 1.62 16 29 H 0.13 4.91 6.27 -2.91 -0.02 4.89 16 30 H 0.12 4.63 8.02 -2.91 -0.02 4.61 16 31 H 0.13 4.49 8.03 -2.91 -0.02 4.46 16 32 H 0.13 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.10 0.88 7.74 -2.39 -0.02 0.86 16 34 H 0.10 0.91 7.74 -2.39 -0.02 0.89 16 35 H 0.17 2.59 5.86 -2.91 -0.02 2.57 16 36 H 0.16 3.73 8.06 -2.91 -0.02 3.70 16 37 H 0.11 6.18 5.94 -2.91 -0.02 6.17 16 38 H 0.29 14.41 8.30 -92.71 -0.77 13.64 16 Total: -1.00 -69.94 339.03 6.07 -63.87 By element: Atomic # 1 Polarization: 21.95 SS G_CDS: 1.09 Total: 23.05 kcal Atomic # 6 Polarization: -62.00 SS G_CDS: 4.14 Total: -57.86 kcal Atomic # 7 Polarization: -45.14 SS G_CDS: 0.24 Total: -44.90 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -0.87 Total: -16.95 kcal Atomic # 9 Polarization: -6.67 SS G_CDS: 0.71 Total: -5.96 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.94 kcal Atomic # 16 Polarization: -2.91 SS G_CDS: -1.27 Total: -4.19 kcal Total: -69.94 6.07 -63.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245747264.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.883 kcal (2) G-P(sol) polarization free energy of solvation -69.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds