Wall clock time and date at job start Tue Mar 31 2020 12:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35611 * 116.99930 * 2 1 4 4 C 1.39135 * 119.88396 * 0.21326 * 3 2 1 5 5 C 1.36420 * 120.43805 * 180.25592 * 4 3 2 6 6 C 1.40901 * 120.18961 * 359.78588 * 5 4 3 7 7 C 1.41244 * 120.12256 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00088 * 24.57896 * 7 6 5 9 9 C 1.39857 * 120.00284 * 204.58789 * 7 6 5 10 10 N 1.30904 * 120.00038 * 17.94907 * 9 7 6 11 11 Si 1.86802 * 120.00205 * 197.95308 * 9 7 6 12 12 H 1.48508 * 109.46843 * 59.99667 * 11 9 7 13 13 H 1.48499 * 109.47415 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47084 * 300.00111 * 11 9 7 15 15 C 1.40615 * 119.76258 * 359.97438 * 6 5 4 16 16 C 1.38589 * 119.57011 * 0.02562 * 15 6 5 17 17 C 1.48327 * 120.09822 * 179.97438 * 16 15 6 18 18 C 1.39266 * 120.09460 * 64.97808 * 17 16 15 19 19 C 1.38704 * 119.81802 * 180.02562 * 18 17 16 20 20 S 1.76201 * 119.99364 * 180.02562 * 19 18 17 21 21 C 1.81397 * 103.00225 * 179.97438 * 20 19 18 22 22 C 1.39040 * 120.01326 * 359.72833 * 19 18 17 23 23 C 1.38163 * 120.19334 * 0.54442 * 22 19 18 24 24 C 1.38291 * 120.18046 * 359.45193 * 23 22 19 25 25 F 1.35099 * 120.00782 * 180.24943 * 24 23 22 26 26 H 1.08998 * 109.47005 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47119 * 299.99552 * 1 2 3 28 28 H 1.08999 * 109.47444 * 60.00497 * 1 2 3 29 29 H 1.08006 * 119.78269 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.90226 * 179.76474 * 5 4 3 31 31 H 0.97001 * 119.99874 * 179.97438 * 10 9 7 32 32 H 1.08001 * 120.21757 * 180.02562 * 15 6 5 33 33 H 1.08005 * 120.09646 * 359.97438 * 18 17 16 34 34 H 1.08995 * 109.47184 * 300.00841 * 21 20 19 35 35 H 1.09010 * 109.46741 * 59.99965 * 21 20 19 36 36 H 1.09002 * 109.47437 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.90570 * 180.27425 * 22 19 18 38 38 H 1.08003 * 119.91058 * 179.72661 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2845 2.3736 0.0045 5 6 1.8920 3.5951 -0.0007 6 6 3.2980 3.6871 -0.0062 7 6 3.9255 4.9525 -0.0110 8 1 3.4049 5.8149 0.3783 9 6 5.2210 5.0887 -0.5201 10 7 5.7194 4.1614 -1.2980 11 14 6.2402 6.5939 -0.0898 12 1 6.4240 6.6630 1.3823 13 1 7.5670 6.4987 -0.7499 14 1 5.5399 7.8165 -0.5590 15 6 4.0743 2.5147 -0.0057 16 6 3.4468 1.2790 -0.0004 17 6 4.2542 0.0347 -0.0003 18 6 5.0659 -0.2710 1.0892 19 6 5.8189 -1.4358 1.0830 20 16 6.8469 -1.8276 2.4593 21 6 7.5971 -3.4057 1.9723 22 6 5.7580 -2.2975 -0.0065 23 6 4.9572 -1.9919 -1.0902 24 6 4.2030 -0.8328 -1.0924 25 9 3.4173 -0.5399 -2.1517 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 0.2063 2.3108 0.0084 30 1 1.2935 4.4941 -0.0010 31 1 6.6178 4.2561 -1.6514 32 1 5.1525 2.5766 -0.0094 33 1 5.1096 0.3974 1.9365 34 1 6.8136 -4.1459 1.8105 35 1 8.1641 -3.2695 1.0513 36 1 8.2650 -3.7496 2.7622 37 1 6.3417 -3.2062 -0.0077 38 1 4.9167 -2.6624 -1.9360 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245748069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:47 Heat of formation + Delta-G solvation = -40.618256 kcal Electronic energy + Delta-G solvation = -23832.975854 eV Core-core repulsion = 20260.035604 eV Total energy + Delta-G solvation = -3572.940250 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -48.21850 -39.13822 -38.13214 -36.34133 -33.46858 -32.17589 -30.35618 -29.46879 -29.12958 -28.03399 -26.83513 -24.67308 -22.96087 -22.43267 -20.73947 -20.26240 -17.83527 -17.00785 -16.89194 -16.59142 -15.99892 -15.36130 -15.00485 -14.81540 -14.75956 -14.65092 -14.25520 -13.84930 -13.64311 -13.13614 -12.95326 -12.87743 -12.72565 -12.60949 -12.20674 -12.01208 -11.87494 -11.54420 -11.23623 -11.08405 -10.98269 -10.77718 -10.66448 -10.21198 -10.02023 -9.91256 -9.49972 -9.22320 -9.06129 -8.64699 -7.57179 -7.18684 -7.04577 -6.74043 -4.28695 1.36692 1.50766 1.57192 2.45444 2.68679 2.82251 3.08425 3.10157 3.19019 3.86100 3.94398 4.30591 4.52928 4.69496 4.94036 4.94488 5.02798 5.13096 5.36833 5.51090 5.54374 5.63802 5.65458 5.71408 5.86882 6.01001 6.10109 6.14151 6.31951 6.42862 6.51443 6.68882 6.90719 7.02730 7.13820 7.16406 7.34065 7.42374 7.69898 7.90020 8.11539 8.39643 8.57255 8.85590 8.90423 10.20414 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010110 B = 0.005234 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.997569 B = 5348.497594 C = 7121.209391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.039 3.961 2 O -0.325 6.325 3 C 0.021 3.979 4 C -0.169 4.169 5 C -0.184 4.184 6 C 0.086 3.914 7 C -0.463 4.463 8 H 0.078 0.922 9 C 0.076 3.924 10 N -0.797 5.797 11 Si 0.907 3.093 12 H -0.264 1.264 13 H -0.279 1.279 14 H -0.266 1.266 15 C -0.109 4.109 16 C -0.075 4.075 17 C -0.010 4.010 18 C -0.062 4.062 19 C -0.100 4.100 20 S -0.120 6.120 21 C -0.145 4.145 22 C -0.119 4.119 23 C -0.143 4.143 24 C 0.116 3.884 25 F -0.129 7.129 26 H 0.081 0.919 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.099 0.901 30 H 0.097 0.903 31 H 0.281 0.719 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.104 0.896 37 H 0.126 0.874 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.347 -11.998 3.247 12.502 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.240 6.240 3 C -0.023 4.023 4 C -0.188 4.188 5 C -0.203 4.203 6 C 0.084 3.916 7 C -0.493 4.493 8 H 0.096 0.904 9 C -0.141 4.141 10 N -0.423 5.423 11 Si 0.731 3.269 12 H -0.188 1.188 13 H -0.204 1.204 14 H -0.191 1.191 15 C -0.128 4.128 16 C -0.076 4.076 17 C -0.013 4.013 18 C -0.085 4.085 19 C -0.212 4.212 20 S 0.120 5.880 21 C -0.313 4.313 22 C -0.143 4.143 23 C -0.163 4.163 24 C 0.095 3.905 25 F -0.108 7.108 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.061 0.939 29 H 0.117 0.883 30 H 0.115 0.885 31 H 0.092 0.908 32 H 0.148 0.852 33 H 0.153 0.847 34 H 0.101 0.899 35 H 0.101 0.899 36 H 0.123 0.877 37 H 0.144 0.856 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.890 -11.697 4.140 12.551 hybrid contribution -0.171 0.216 -1.409 1.435 sum 1.719 -11.481 2.731 11.926 Atomic orbital electron populations 1.22712 0.80943 1.01766 1.00308 1.85855 1.19118 1.28272 1.90787 1.18458 0.90510 0.83193 1.10139 1.20345 0.97495 0.92757 1.08232 1.20649 0.94825 0.95164 1.09701 1.17468 0.90544 0.93241 0.90380 1.19398 0.98673 0.94868 1.36374 0.90417 1.25863 0.97966 0.97732 0.92581 1.69823 1.16550 1.33628 1.22283 0.86392 0.78805 0.81733 0.79960 1.18811 1.20356 1.19077 1.21291 0.99990 0.88985 1.02525 1.17653 0.88788 0.91545 1.09606 1.18796 0.96103 0.94307 0.92094 1.20733 0.94778 0.94945 0.98015 1.21486 1.02637 0.99058 0.98061 1.85461 1.52159 1.26491 1.23862 1.23639 1.03822 0.97830 1.06028 1.20802 1.00930 0.99418 0.93143 1.20832 0.98844 0.96838 0.99833 1.17738 0.92771 0.94865 0.85121 1.91494 1.72035 1.93292 1.53945 0.90056 0.93912 0.93864 0.88273 0.88456 0.90758 0.85189 0.84667 0.89906 0.89853 0.87693 0.85643 0.84988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.61 9.80 101.05 0.99 1.60 16 2 O -0.33 -6.80 9.62 -18.53 -0.18 -6.98 16 3 C 0.02 0.48 6.51 -38.44 -0.25 0.23 16 4 C -0.17 -3.80 8.95 -39.90 -0.36 -4.16 16 5 C -0.18 -4.43 9.72 -39.23 -0.38 -4.81 16 6 C 0.09 2.25 5.57 -106.85 -0.60 1.66 16 7 C -0.46 -12.09 9.04 -37.83 -0.34 -12.43 16 8 H 0.08 1.94 7.91 -52.49 -0.41 1.52 16 9 C 0.08 1.89 5.13 -17.34 -0.09 1.80 16 10 N -0.80 -20.61 10.96 55.54 0.61 -20.00 16 11 Si 0.91 18.61 29.60 -169.99 -5.03 13.58 16 12 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 13 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 14 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 15 C -0.11 -2.79 8.36 -38.56 -0.32 -3.12 16 16 C -0.07 -1.79 5.01 -104.81 -0.53 -2.32 16 17 C -0.01 -0.22 4.94 -104.87 -0.52 -0.74 16 18 C -0.06 -1.16 9.47 -39.03 -0.37 -1.53 16 19 C -0.10 -1.61 6.10 -39.11 -0.24 -1.84 16 20 S -0.12 -1.60 22.56 -107.50 -2.43 -4.03 16 21 C -0.14 -1.27 9.15 101.05 0.92 -0.35 16 22 C -0.12 -1.73 9.36 -39.31 -0.37 -2.10 16 23 C -0.14 -2.28 10.01 -39.59 -0.40 -2.67 16 24 C 0.12 2.31 6.94 -39.07 -0.27 2.04 16 25 F -0.13 -2.78 16.61 2.25 0.04 -2.74 16 26 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 27 H 0.04 0.63 7.64 -51.93 -0.40 0.24 16 28 H 0.04 0.66 7.66 -51.93 -0.40 0.26 16 29 H 0.10 1.92 6.26 -52.48 -0.33 1.59 16 30 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 31 H 0.28 6.70 8.30 -40.82 -0.34 6.36 16 32 H 0.13 3.47 6.16 -52.49 -0.32 3.14 16 33 H 0.14 2.53 8.06 -52.48 -0.42 2.10 16 34 H 0.08 0.66 7.73 -51.93 -0.40 0.26 16 35 H 0.08 0.68 7.76 -51.92 -0.40 0.28 16 36 H 0.10 0.72 8.14 -51.92 -0.42 0.30 16 37 H 0.13 1.39 5.86 -52.48 -0.31 1.08 16 38 H 0.13 1.72 8.06 -52.48 -0.42 1.30 16 LS Contribution 340.43 15.07 5.13 5.13 Total: -1.00 -28.90 340.43 -9.19 -38.09 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: -4.22 Total: 5.67 kcal Atomic # 6 Polarization: -25.61 SS G_CDS: -3.11 Total: -28.72 kcal Atomic # 7 Polarization: -20.61 SS G_CDS: 0.61 Total: -20.00 kcal Atomic # 8 Polarization: -6.80 SS G_CDS: -0.18 Total: -6.98 kcal Atomic # 9 Polarization: -2.78 SS G_CDS: 0.04 Total: -2.74 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.43 Total: -4.03 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -28.90 -9.19 -38.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245748069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.529 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds