Wall clock time and date at job start Tue Mar 31 2020 12:30:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35611 * 116.99930 * 2 1 4 4 C 1.39135 * 119.88396 * 0.21326 * 3 2 1 5 5 C 1.36420 * 120.43805 * 180.25592 * 4 3 2 6 6 C 1.40901 * 120.18961 * 359.78588 * 5 4 3 7 7 C 1.41244 * 120.12256 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00088 * 24.57896 * 7 6 5 9 9 C 1.39857 * 120.00284 * 204.58789 * 7 6 5 10 10 N 1.30904 * 120.00038 * 17.94907 * 9 7 6 11 11 Si 1.86802 * 120.00205 * 197.95308 * 9 7 6 12 12 H 1.48508 * 109.46843 * 59.99667 * 11 9 7 13 13 H 1.48499 * 109.47415 * 179.97438 * 11 9 7 14 14 H 1.48498 * 109.47084 * 300.00111 * 11 9 7 15 15 C 1.40615 * 119.76258 * 359.97438 * 6 5 4 16 16 C 1.38589 * 119.57011 * 0.02562 * 15 6 5 17 17 C 1.48327 * 120.09822 * 179.97438 * 16 15 6 18 18 C 1.39266 * 120.09460 * 64.97808 * 17 16 15 19 19 C 1.38704 * 119.81802 * 180.02562 * 18 17 16 20 20 S 1.76201 * 119.99364 * 180.02562 * 19 18 17 21 21 C 1.81397 * 103.00225 * 179.97438 * 20 19 18 22 22 C 1.39040 * 120.01326 * 359.72833 * 19 18 17 23 23 C 1.38163 * 120.19334 * 0.54442 * 22 19 18 24 24 C 1.38291 * 120.18046 * 359.45193 * 23 22 19 25 25 F 1.35099 * 120.00782 * 180.24943 * 24 23 22 26 26 H 1.08998 * 109.47005 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47119 * 299.99552 * 1 2 3 28 28 H 1.08999 * 109.47444 * 60.00497 * 1 2 3 29 29 H 1.08006 * 119.78269 * 0.02562 * 4 3 2 30 30 H 1.08002 * 119.90226 * 179.76474 * 5 4 3 31 31 H 0.97001 * 119.99874 * 179.97438 * 10 9 7 32 32 H 1.08001 * 120.21757 * 180.02562 * 15 6 5 33 33 H 1.08005 * 120.09646 * 359.97438 * 18 17 16 34 34 H 1.08995 * 109.47184 * 300.00841 * 21 20 19 35 35 H 1.09010 * 109.46741 * 59.99965 * 21 20 19 36 36 H 1.09002 * 109.47437 * 179.97438 * 21 20 19 37 37 H 1.08004 * 119.90570 * 180.27425 * 22 19 18 38 38 H 1.08003 * 119.91058 * 179.72661 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0447 1.2083 0.0000 4 6 1.2845 2.3736 0.0045 5 6 1.8920 3.5951 -0.0007 6 6 3.2980 3.6871 -0.0062 7 6 3.9255 4.9525 -0.0110 8 1 3.4049 5.8149 0.3783 9 6 5.2210 5.0887 -0.5201 10 7 5.7194 4.1614 -1.2980 11 14 6.2402 6.5939 -0.0898 12 1 6.4240 6.6630 1.3823 13 1 7.5670 6.4987 -0.7499 14 1 5.5399 7.8165 -0.5590 15 6 4.0743 2.5147 -0.0057 16 6 3.4468 1.2790 -0.0004 17 6 4.2542 0.0347 -0.0003 18 6 5.0659 -0.2710 1.0892 19 6 5.8189 -1.4358 1.0830 20 16 6.8469 -1.8276 2.4593 21 6 7.5971 -3.4057 1.9723 22 6 5.7580 -2.2975 -0.0065 23 6 4.9572 -1.9919 -1.0902 24 6 4.2030 -0.8328 -1.0924 25 9 3.4173 -0.5399 -2.1517 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 0.2063 2.3108 0.0084 30 1 1.2935 4.4941 -0.0010 31 1 6.6178 4.2561 -1.6514 32 1 5.1525 2.5766 -0.0094 33 1 5.1096 0.3974 1.9365 34 1 6.8136 -4.1459 1.8105 35 1 8.1641 -3.2695 1.0513 36 1 8.2650 -3.7496 2.7622 37 1 6.3417 -3.2062 -0.0077 38 1 4.9167 -2.6624 -1.9360 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245748069.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:30:46 Heat of formation + Delta-G solvation = -54.428900 kcal Electronic energy + Delta-G solvation = -23833.574729 eV Core-core repulsion = 20260.035604 eV Total energy + Delta-G solvation = -3573.539125 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.083 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.76149 -40.76911 -39.55839 -38.08815 -35.29109 -33.74190 -31.68671 -31.00693 -30.54620 -29.24870 -28.33419 -26.47474 -24.45479 -23.81395 -22.52400 -21.91947 -19.46616 -18.64658 -18.40626 -18.01153 -17.44134 -17.07936 -16.63319 -16.32017 -16.21123 -15.92284 -15.67169 -15.10412 -14.87118 -14.61462 -14.38054 -14.33704 -14.23710 -13.83694 -13.66680 -13.43183 -13.27423 -13.07487 -12.81338 -12.71158 -12.49159 -12.39771 -12.26599 -11.78762 -11.62507 -11.25696 -11.20238 -10.89999 -10.49326 -10.11896 -9.36471 -8.90970 -8.59589 -8.31983 -6.24514 -0.01428 0.14141 0.53020 0.89300 0.98165 1.38371 1.49129 1.51390 1.52882 2.21746 2.47302 2.68256 2.78442 3.34527 3.59832 3.68512 3.81785 4.06160 4.23492 4.30649 4.33843 4.36769 4.41272 4.46253 4.58917 4.71311 4.75188 4.83397 4.90679 5.02606 5.06637 5.08918 5.15352 5.25229 5.29976 5.49375 5.55895 5.77436 5.86089 6.00749 6.21232 6.53290 6.76970 6.93190 7.04662 8.36142 Molecular weight = 318.08amu Principal moments of inertia in cm(-1) A = 0.010110 B = 0.005234 C = 0.003931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.997569 B = 5348.497594 C = 7121.209391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.338 6.338 3 C 0.021 3.979 4 C -0.170 4.170 5 C -0.197 4.197 6 C 0.055 3.945 7 C -0.499 4.499 8 H 0.079 0.921 9 C 0.035 3.965 10 N -0.832 5.832 11 Si 0.979 3.021 12 H -0.260 1.260 13 H -0.270 1.270 14 H -0.258 1.258 15 C -0.131 4.131 16 C -0.083 4.083 17 C -0.041 4.041 18 C -0.081 4.081 19 C -0.096 4.096 20 S -0.146 6.146 21 C -0.135 4.135 22 C -0.105 4.105 23 C -0.129 4.129 24 C 0.084 3.916 25 F -0.148 7.148 26 H 0.114 0.886 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.132 0.868 30 H 0.109 0.891 31 H 0.286 0.714 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.096 0.904 36 H 0.129 0.871 37 H 0.172 0.828 38 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.127 -14.544 3.564 15.125 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.253 6.253 3 C -0.023 4.023 4 C -0.189 4.189 5 C -0.216 4.216 6 C 0.053 3.947 7 C -0.528 4.528 8 H 0.097 0.903 9 C -0.179 4.179 10 N -0.459 5.459 11 Si 0.800 3.200 12 H -0.185 1.185 13 H -0.194 1.194 14 H -0.182 1.182 15 C -0.150 4.150 16 C -0.084 4.084 17 C -0.044 4.044 18 C -0.104 4.104 19 C -0.208 4.208 20 S 0.096 5.904 21 C -0.303 4.303 22 C -0.128 4.128 23 C -0.149 4.149 24 C 0.062 3.938 25 F -0.126 7.126 26 H 0.133 0.867 27 H 0.073 0.927 28 H 0.067 0.933 29 H 0.150 0.850 30 H 0.127 0.873 31 H 0.097 0.903 32 H 0.127 0.873 33 H 0.139 0.861 34 H 0.118 0.882 35 H 0.115 0.885 36 H 0.147 0.853 37 H 0.189 0.811 38 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.648 -14.258 4.468 15.174 hybrid contribution -0.454 0.750 -1.437 1.683 sum 2.194 -13.508 3.031 14.017 Atomic orbital electron populations 1.23086 0.78200 1.04353 1.01098 1.85844 1.21928 1.27040 1.90481 1.18649 0.90655 0.84262 1.08719 1.20669 0.99199 0.91943 1.07081 1.20867 0.94325 0.96468 1.09979 1.17837 0.91804 0.93737 0.91371 1.19661 1.00159 0.95027 1.38000 0.90336 1.26711 0.98548 1.00823 0.91774 1.69909 1.17060 1.35654 1.23239 0.85296 0.77211 0.77848 0.79643 1.18477 1.19429 1.18223 1.21152 0.99095 0.90066 1.04727 1.17970 0.90004 0.92273 1.08190 1.18805 0.97519 0.94124 0.93925 1.20666 0.95968 0.96456 0.97356 1.21729 1.01694 0.97888 0.99525 1.85642 1.51690 1.30200 1.22908 1.23836 1.04393 0.94633 1.07482 1.21323 0.99888 1.00148 0.91477 1.21226 0.97049 0.95397 1.01194 1.18065 0.94476 0.96534 0.84677 1.91433 1.72863 1.93680 1.54646 0.86729 0.92734 0.93295 0.85011 0.87301 0.90333 0.87257 0.86136 0.88206 0.88500 0.85300 0.81058 0.81522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.82 9.80 113.37 1.11 1.93 16 2 O -0.34 -14.08 9.62 -89.22 -0.86 -14.94 16 3 C 0.02 1.02 6.51 23.01 0.15 1.17 16 4 C -0.17 -7.75 8.95 22.06 0.20 -7.56 16 5 C -0.20 -9.86 9.72 22.50 0.22 -9.64 16 6 C 0.05 3.04 5.57 -21.31 -0.12 2.92 16 7 C -0.50 -27.41 9.04 23.40 0.21 -27.20 16 8 H 0.08 4.11 7.91 -2.91 -0.02 4.09 16 9 C 0.04 1.83 5.13 85.22 0.44 2.27 16 10 N -0.83 -45.27 10.96 21.81 0.24 -45.03 16 11 Si 0.98 39.25 29.60 68.60 2.03 41.29 16 12 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 13 H -0.27 -10.31 7.11 99.48 0.71 -9.60 16 14 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 15 C -0.13 -7.22 8.36 22.93 0.19 -7.03 16 16 C -0.08 -4.21 5.01 -19.98 -0.10 -4.31 16 17 C -0.04 -1.82 4.94 -20.02 -0.10 -1.92 16 18 C -0.08 -3.18 9.47 22.63 0.21 -2.97 16 19 C -0.10 -2.97 6.10 22.57 0.14 -2.83 16 20 S -0.15 -3.59 22.56 -56.49 -1.27 -4.86 16 21 C -0.14 -1.75 9.15 113.37 1.04 -0.71 16 22 C -0.11 -2.70 9.36 22.44 0.21 -2.49 16 23 C -0.13 -3.81 10.01 22.26 0.22 -3.58 16 24 C 0.08 3.37 6.94 22.60 0.16 3.52 16 25 F -0.15 -6.48 16.61 44.97 0.75 -5.74 16 26 H 0.11 2.65 8.14 -2.39 -0.02 2.64 16 27 H 0.05 1.51 7.64 -2.39 -0.02 1.49 16 28 H 0.05 1.41 7.66 -2.39 -0.02 1.39 16 29 H 0.13 4.98 6.26 -2.91 -0.02 4.96 16 30 H 0.11 5.03 8.06 -2.91 -0.02 5.00 16 31 H 0.29 14.23 8.30 -92.71 -0.77 13.46 16 32 H 0.11 6.35 6.16 -2.91 -0.02 6.33 16 33 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 34 H 0.10 1.03 7.73 -2.39 -0.02 1.01 16 35 H 0.10 1.07 7.76 -2.38 -0.02 1.06 16 36 H 0.13 1.15 8.14 -2.39 -0.02 1.13 16 37 H 0.17 2.81 5.86 -2.91 -0.02 2.79 16 38 H 0.17 3.71 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -68.29 340.43 6.15 -62.13 By element: Atomic # 1 Polarization: 24.49 SS G_CDS: 1.09 Total: 25.58 kcal Atomic # 6 Polarization: -62.60 SS G_CDS: 4.18 Total: -58.42 kcal Atomic # 7 Polarization: -45.27 SS G_CDS: 0.24 Total: -45.03 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: -0.86 Total: -14.94 kcal Atomic # 9 Polarization: -6.48 SS G_CDS: 0.75 Total: -5.74 kcal Atomic # 14 Polarization: 39.25 SS G_CDS: 2.03 Total: 41.29 kcal Atomic # 16 Polarization: -3.59 SS G_CDS: -1.27 Total: -4.86 kcal Total: -68.29 6.15 -62.13 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245748069.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.703 kcal (2) G-P(sol) polarization free energy of solvation -68.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds