Wall clock time and date at job start Tue Mar 31 2020 12:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46993 * 2 1 4 4 C 1.35714 * 116.99909 * 180.02562 * 3 2 1 5 5 C 1.38664 * 119.59785 * 180.25593 * 4 3 2 6 6 C 1.39797 * 118.95156 * 180.24729 * 5 4 3 7 7 C 1.47884 * 120.91628 * 179.77695 * 6 5 4 8 8 N 1.32554 * 119.99065 * 128.12559 * 7 6 5 9 9 C 1.31726 * 121.72999 * 180.02562 * 8 7 6 10 10 C 1.50700 * 119.25197 * 180.02562 * 9 8 7 11 11 C 1.38887 * 121.50329 * 0.02562 * 9 8 7 12 12 C 1.36881 * 119.78710 * 359.73702 * 11 9 8 13 13 C 1.41140 * 118.38904 * 0.52595 * 12 11 9 14 14 C 1.40901 * 120.71680 * 179.73136 * 13 12 11 15 15 H 1.08004 * 119.99587 * 154.05769 * 14 13 12 16 16 C 1.40102 * 120.00125 * 334.33564 * 14 13 12 17 17 N 1.30741 * 120.00040 * 343.81754 * 16 14 13 18 18 Si 1.86807 * 120.00149 * 163.81485 * 16 14 13 19 19 H 1.48505 * 109.47139 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46968 * 119.99912 * 18 16 14 21 21 H 1.48493 * 109.47136 * 240.00177 * 18 16 14 22 22 C 1.40281 * 118.17897 * 359.50293 * 6 5 4 23 23 Cl 1.73601 * 120.45938 * 180.27414 * 22 6 5 24 24 C 1.37955 * 119.08252 * 0.24946 * 22 6 5 25 25 N 1.32004 * 120.96536 * 0.02562 * 24 22 6 26 26 H 1.09000 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46556 * 299.99853 * 1 2 3 28 28 H 1.08991 * 109.47435 * 59.99360 * 1 2 3 29 29 H 1.09001 * 109.46789 * 240.00495 * 2 1 3 30 30 H 1.08991 * 109.47563 * 120.00101 * 2 1 3 31 31 H 1.08001 * 120.52743 * 359.97438 * 5 4 3 32 32 H 1.08997 * 109.47157 * 89.99836 * 10 9 8 33 33 H 1.09001 * 109.47425 * 210.00402 * 10 9 8 34 34 H 1.09001 * 109.46687 * 330.00092 * 10 9 8 35 35 H 1.07999 * 120.10551 * 180.02562 * 11 9 8 36 36 H 1.07997 * 120.80483 * 180.28457 * 12 11 9 37 37 H 0.97003 * 120.00469 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.51198 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5251 -0.0005 5 6 3.8727 2.8102 0.0048 6 6 5.2606 2.9777 -0.0011 7 6 5.8629 4.3284 -0.0007 8 7 6.7842 4.6428 0.8990 9 6 7.3427 5.8353 0.9310 10 6 8.3851 6.1324 1.9781 11 6 6.9929 6.8252 0.0218 12 6 6.0513 6.5657 -0.9372 13 6 5.4530 5.2876 -0.9617 14 6 4.4743 4.9694 -1.9240 15 1 4.3241 3.9423 -2.2223 16 6 3.6999 5.9860 -2.4982 17 7 3.6494 7.1656 -1.9367 18 14 2.7394 5.6561 -4.0661 19 1 2.9634 4.2530 -4.4979 20 1 1.2919 5.8721 -3.8146 21 1 3.2000 6.5811 -5.1326 22 6 6.0665 1.8295 -0.0015 23 17 7.7969 1.9689 -0.0016 24 6 5.4649 0.5881 -0.0014 25 7 4.1501 0.4705 -0.0014 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.2167 3.6681 0.0090 32 1 9.3716 5.8768 1.5914 33 1 8.3565 7.1928 2.2286 34 1 8.1810 5.5424 2.8715 35 1 7.4656 7.7951 0.0684 36 1 5.7702 7.3218 -1.6553 37 1 3.1136 7.8697 -2.3344 38 1 6.0787 -0.3006 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245815988.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:05 Heat of formation + Delta-G solvation = 3.145467 kcal Electronic energy + Delta-G solvation = -23905.914452 eV Core-core repulsion = 20352.748194 eV Total energy + Delta-G solvation = -3553.166258 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.18878 -38.67007 -37.54616 -35.75434 -34.48266 -33.00771 -31.83910 -31.01006 -30.06531 -29.26409 -27.87835 -25.05978 -23.70797 -22.83085 -22.47241 -20.91185 -20.45081 -17.88522 -17.46239 -16.57863 -16.03757 -15.85251 -15.66344 -14.66098 -14.53853 -14.11163 -13.87474 -13.72623 -13.47311 -13.17791 -12.69004 -12.53635 -12.48135 -12.09303 -11.90954 -11.80243 -11.57979 -11.50920 -11.35153 -11.24861 -11.16899 -11.03190 -10.64612 -10.49260 -10.39237 -10.04803 -9.52093 -9.26456 -9.15234 -8.26545 -8.15440 -7.90077 -7.55635 -7.04046 -4.64330 1.52013 1.56342 2.50157 2.76099 2.84323 2.94091 3.00049 3.07661 3.37352 3.72974 4.16600 4.40425 4.63419 5.08278 5.09810 5.16326 5.26080 5.44134 5.52580 5.55960 5.71807 5.88775 5.91505 6.02346 6.04596 6.19325 6.22222 6.32359 6.38990 6.49353 6.52145 6.72765 6.85652 6.90610 6.96662 7.07226 7.55753 7.60024 7.68677 7.79653 8.18329 8.23774 8.45733 8.52785 9.48247 9.83896 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.008936 B = 0.006643 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.699499 B = 4214.056689 C = 6462.005952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.067 3.933 3 O -0.306 6.306 4 C 0.312 3.688 5 C -0.155 4.155 6 C 0.115 3.885 7 C -0.005 4.005 8 N -0.426 5.426 9 C -0.005 4.005 10 C -0.073 4.073 11 C -0.136 4.136 12 C -0.126 4.126 13 C 0.092 3.908 14 C -0.434 4.434 15 H 0.086 0.914 16 C 0.077 3.923 17 N -0.777 5.777 18 Si 0.908 3.092 19 H -0.256 1.256 20 H -0.269 1.269 21 H -0.269 1.269 22 C -0.116 4.116 23 Cl -0.054 7.054 24 C 0.137 3.863 25 N -0.545 5.545 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.153 0.847 32 H 0.050 0.950 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.287 0.713 38 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.406 -7.130 1.063 7.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 O -0.214 6.214 4 C 0.135 3.865 5 C -0.177 4.177 6 C 0.106 3.894 7 C -0.142 4.142 8 N -0.134 5.134 9 C -0.149 4.149 10 C -0.131 4.131 11 C -0.156 4.156 12 C -0.152 4.152 13 C 0.088 3.912 14 C -0.462 4.462 15 H 0.104 0.896 16 C -0.144 4.144 17 N -0.401 5.401 18 Si 0.732 3.268 19 H -0.180 1.180 20 H -0.194 1.194 21 H -0.194 1.194 22 C -0.146 4.146 23 Cl -0.025 7.025 24 C -0.019 4.019 25 N -0.270 5.270 26 H 0.093 0.907 27 H 0.083 0.917 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.170 0.830 32 H 0.068 0.932 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.118 0.882 36 H 0.146 0.854 37 H 0.098 0.902 38 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -1.751 -8.141 1.645 8.488 hybrid contribution -0.184 1.300 -1.392 1.913 sum -1.935 -6.841 0.254 7.114 Atomic orbital electron populations 1.21812 0.93471 1.02432 1.03314 1.22509 0.94382 0.81757 1.02192 1.86255 1.17046 1.29827 1.88224 1.19623 0.83595 0.89783 0.93518 1.21232 0.94632 0.95690 1.06118 1.18427 0.90568 0.91563 0.88811 1.18912 1.03369 0.93212 0.98716 1.66779 1.05793 1.19110 1.21714 1.20222 1.03141 0.90501 1.01017 1.20273 0.96102 0.99937 0.96770 1.21292 0.98847 0.98415 0.97086 1.21393 0.96127 0.98214 0.99493 1.18239 0.91146 0.91178 0.90686 1.19657 1.14066 0.95230 1.17278 0.89558 1.26018 0.96222 0.94195 0.97953 1.69743 1.31170 1.03425 1.35713 0.86216 0.79335 0.80427 0.80828 1.17964 1.19427 1.19357 1.21986 0.86326 0.94940 1.11343 1.98326 1.08810 1.98352 1.97025 1.22010 0.89089 0.95365 0.95438 1.67239 1.05444 1.32889 1.21412 0.90677 0.91745 0.91680 0.91888 0.91936 0.82970 0.93155 0.92927 0.92547 0.88180 0.85427 0.90188 0.82442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.59 10.28 37.16 0.38 -1.21 16 2 C 0.07 0.91 6.03 37.16 0.22 1.13 16 3 O -0.31 -5.35 10.11 -18.85 -0.19 -5.54 16 4 C 0.31 5.98 7.48 -17.20 -0.13 5.85 16 5 C -0.16 -3.26 8.09 -38.84 -0.31 -3.57 16 6 C 0.12 2.53 5.01 -104.60 -0.52 2.00 16 7 C -0.01 -0.12 5.89 -82.23 -0.48 -0.61 16 8 N -0.43 -10.04 9.11 -5.44 -0.05 -10.08 16 9 C -0.01 -0.12 6.79 -82.40 -0.56 -0.67 16 10 C -0.07 -1.29 10.15 36.01 0.37 -0.92 16 11 C -0.14 -3.01 9.65 -39.83 -0.38 -3.39 16 12 C -0.13 -3.05 8.74 -38.97 -0.34 -3.39 16 13 C 0.09 2.30 5.57 -106.41 -0.59 1.71 16 14 C -0.43 -10.55 7.33 -37.88 -0.28 -10.83 16 15 H 0.09 2.10 6.67 -52.48 -0.35 1.75 16 16 C 0.08 1.77 5.19 -17.32 -0.09 1.68 16 17 N -0.78 -18.24 10.97 55.56 0.61 -17.63 16 18 Si 0.91 17.53 29.59 -169.99 -5.03 12.50 16 19 H -0.26 -5.02 7.11 56.52 0.40 -4.61 16 20 H -0.27 -5.12 7.11 56.52 0.40 -4.72 16 21 H -0.27 -5.07 7.11 56.52 0.40 -4.67 16 22 C -0.12 -2.27 6.37 -38.92 -0.25 -2.52 16 23 Cl -0.05 -1.01 27.34 -51.86 -1.42 -2.43 16 24 C 0.14 2.37 10.97 -17.58 -0.19 2.17 16 25 N -0.55 -9.82 9.19 -13.39 -0.12 -9.94 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.06 0.66 8.14 -51.92 -0.42 0.24 16 28 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 31 H 0.15 3.33 7.51 -52.49 -0.39 2.94 16 32 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 34 H 0.06 0.98 8.14 -51.93 -0.42 0.55 16 35 H 0.10 1.92 8.06 -52.49 -0.42 1.50 16 36 H 0.13 3.11 6.29 -52.49 -0.33 2.78 16 37 H 0.29 6.08 8.29 -40.82 -0.34 5.75 16 38 H 0.16 2.20 8.06 -52.49 -0.42 1.77 16 LS Contribution 341.04 15.07 5.14 5.14 Total: -1.00 -26.59 341.04 -8.66 -35.25 By element: Atomic # 1 Polarization: 9.74 SS G_CDS: -4.43 Total: 5.31 kcal Atomic # 6 Polarization: -9.42 SS G_CDS: -3.17 Total: -12.58 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.44 Total: -37.66 kcal Atomic # 8 Polarization: -5.35 SS G_CDS: -0.19 Total: -5.54 kcal Atomic # 14 Polarization: 17.53 SS G_CDS: -5.03 Total: 12.50 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.42 Total: -2.43 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -26.59 -8.66 -35.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245815988.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.392 kcal (2) G-P(sol) polarization free energy of solvation -26.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds