Wall clock time and date at job start Tue Mar 31 2020 12:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42903 * 109.46993 * 2 1 4 4 C 1.35714 * 116.99909 * 180.02562 * 3 2 1 5 5 C 1.38664 * 119.59785 * 180.25593 * 4 3 2 6 6 C 1.39797 * 118.95156 * 180.24729 * 5 4 3 7 7 C 1.47884 * 120.91628 * 179.77695 * 6 5 4 8 8 N 1.32554 * 119.99065 * 128.12559 * 7 6 5 9 9 C 1.31726 * 121.72999 * 180.02562 * 8 7 6 10 10 C 1.50700 * 119.25197 * 180.02562 * 9 8 7 11 11 C 1.38887 * 121.50329 * 0.02562 * 9 8 7 12 12 C 1.36881 * 119.78710 * 359.73702 * 11 9 8 13 13 C 1.41140 * 118.38904 * 0.52595 * 12 11 9 14 14 C 1.40901 * 120.71680 * 179.73136 * 13 12 11 15 15 H 1.08004 * 119.99587 * 154.05769 * 14 13 12 16 16 C 1.40102 * 120.00125 * 334.33564 * 14 13 12 17 17 N 1.30741 * 120.00040 * 343.81754 * 16 14 13 18 18 Si 1.86807 * 120.00149 * 163.81485 * 16 14 13 19 19 H 1.48505 * 109.47139 * 359.97438 * 18 16 14 20 20 H 1.48500 * 109.46968 * 119.99912 * 18 16 14 21 21 H 1.48493 * 109.47136 * 240.00177 * 18 16 14 22 22 C 1.40281 * 118.17897 * 359.50293 * 6 5 4 23 23 Cl 1.73601 * 120.45938 * 180.27414 * 22 6 5 24 24 C 1.37955 * 119.08252 * 0.24946 * 22 6 5 25 25 N 1.32004 * 120.96536 * 0.02562 * 24 22 6 26 26 H 1.09000 * 109.46990 * 180.02562 * 1 2 3 27 27 H 1.09008 * 109.46556 * 299.99853 * 1 2 3 28 28 H 1.08991 * 109.47435 * 59.99360 * 1 2 3 29 29 H 1.09001 * 109.46789 * 240.00495 * 2 1 3 30 30 H 1.08991 * 109.47563 * 120.00101 * 2 1 3 31 31 H 1.08001 * 120.52743 * 359.97438 * 5 4 3 32 32 H 1.08997 * 109.47157 * 89.99836 * 10 9 8 33 33 H 1.09001 * 109.47425 * 210.00402 * 10 9 8 34 34 H 1.09001 * 109.46687 * 330.00092 * 10 9 8 35 35 H 1.07999 * 120.10551 * 180.02562 * 11 9 8 36 36 H 1.07997 * 120.80483 * 180.28457 * 12 11 9 37 37 H 0.97003 * 120.00469 * 179.97438 * 17 16 14 38 38 H 1.07999 * 119.51198 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3518 1.5251 -0.0005 5 6 3.8727 2.8102 0.0048 6 6 5.2606 2.9777 -0.0011 7 6 5.8629 4.3284 -0.0007 8 7 6.7842 4.6428 0.8990 9 6 7.3427 5.8353 0.9310 10 6 8.3851 6.1324 1.9781 11 6 6.9929 6.8252 0.0218 12 6 6.0513 6.5657 -0.9372 13 6 5.4530 5.2876 -0.9617 14 6 4.4743 4.9694 -1.9240 15 1 4.3241 3.9423 -2.2223 16 6 3.6999 5.9860 -2.4982 17 7 3.6494 7.1656 -1.9367 18 14 2.7394 5.6561 -4.0661 19 1 2.9634 4.2530 -4.4979 20 1 1.2919 5.8721 -3.8146 21 1 3.2000 6.5811 -5.1326 22 6 6.0665 1.8295 -0.0015 23 17 7.7969 1.9689 -0.0016 24 6 5.4649 0.5881 -0.0014 25 7 4.1501 0.4705 -0.0014 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3634 0.5139 -0.8898 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 3.2167 3.6681 0.0090 32 1 9.3716 5.8768 1.5914 33 1 8.3565 7.1928 2.2286 34 1 8.1810 5.5424 2.8715 35 1 7.4656 7.7951 0.0684 36 1 5.7702 7.3218 -1.6553 37 1 3.1136 7.8697 -2.3344 38 1 6.0787 -0.3006 -0.0013 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245815988.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:04 Heat of formation + Delta-G solvation = -11.117136 kcal Electronic energy + Delta-G solvation = -23906.532925 eV Core-core repulsion = 20352.748194 eV Total energy + Delta-G solvation = -3553.784731 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.67567 -40.34913 -38.97198 -37.24136 -36.22195 -34.62225 -32.95523 -32.75509 -31.66443 -30.67040 -29.54054 -26.66804 -25.21076 -24.32886 -23.78665 -22.61109 -22.02039 -19.44569 -19.13027 -18.06764 -17.45271 -17.36983 -17.23120 -16.34129 -16.11514 -15.64657 -15.37020 -15.07910 -14.89117 -14.71670 -14.28374 -13.82370 -13.70634 -13.50142 -13.45901 -13.34374 -13.19596 -12.97130 -12.75811 -12.63639 -12.54525 -12.46986 -12.23036 -11.97830 -11.77188 -11.58625 -11.23037 -10.83436 -10.72518 -10.04841 -9.92457 -9.43260 -9.25210 -8.76731 -6.45671 -0.08890 0.06068 0.79906 1.09755 1.25849 1.34159 1.45207 1.48089 2.04439 2.12424 2.61218 2.68425 3.23796 3.56660 3.59901 3.95135 4.00110 4.11769 4.18309 4.33745 4.45399 4.48672 4.62166 4.62529 4.74685 4.78763 4.91280 4.97069 5.00262 5.01950 5.07340 5.19474 5.22537 5.27461 5.32485 5.37003 5.77631 5.90592 6.02658 6.22025 6.43731 6.66769 6.69950 6.73947 7.70454 8.14496 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.008936 B = 0.006643 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3132.699499 B = 4214.056689 C = 6462.005952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.058 3.942 3 O -0.318 6.318 4 C 0.317 3.683 5 C -0.172 4.172 6 C 0.094 3.906 7 C -0.016 4.016 8 N -0.440 5.440 9 C -0.014 4.014 10 C -0.068 4.068 11 C -0.138 4.138 12 C -0.147 4.147 13 C 0.065 3.935 14 C -0.455 4.455 15 H 0.076 0.924 16 C 0.045 3.955 17 N -0.804 5.804 18 Si 0.971 3.029 19 H -0.263 1.263 20 H -0.262 1.262 21 H -0.258 1.258 22 C -0.128 4.128 23 Cl -0.048 7.048 24 C 0.153 3.847 25 N -0.536 5.536 26 H 0.105 0.895 27 H 0.063 0.937 28 H 0.061 0.939 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.131 0.869 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.057 0.943 35 H 0.129 0.871 36 H 0.118 0.882 37 H 0.296 0.704 38 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 -8.434 1.124 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.016 4.016 3 O -0.226 6.226 4 C 0.140 3.860 5 C -0.193 4.193 6 C 0.085 3.915 7 C -0.153 4.153 8 N -0.148 5.148 9 C -0.158 4.158 10 C -0.126 4.126 11 C -0.158 4.158 12 C -0.173 4.173 13 C 0.060 3.940 14 C -0.483 4.483 15 H 0.094 0.906 16 C -0.174 4.174 17 N -0.428 5.428 18 Si 0.791 3.209 19 H -0.186 1.186 20 H -0.186 1.186 21 H -0.182 1.182 22 C -0.158 4.158 23 Cl -0.019 7.019 24 C -0.003 4.003 25 N -0.261 5.261 26 H 0.124 0.876 27 H 0.082 0.918 28 H 0.080 0.920 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.149 0.851 32 H 0.084 0.916 33 H 0.095 0.905 34 H 0.076 0.924 35 H 0.147 0.853 36 H 0.136 0.864 37 H 0.107 0.893 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -1.758 -9.441 1.720 9.756 hybrid contribution -0.152 1.643 -1.314 2.109 sum -1.910 -7.798 0.406 8.039 Atomic orbital electron populations 1.21845 0.91009 1.04388 1.03168 1.22877 0.96321 0.79844 1.02585 1.86262 1.16039 1.32529 1.87727 1.19598 0.84520 0.89315 0.92603 1.21056 0.94318 0.96056 1.07910 1.18510 0.91221 0.91619 0.90115 1.19248 1.03430 0.94157 0.98467 1.66896 1.06203 1.19956 1.21749 1.21017 1.03266 0.89917 1.01556 1.20329 0.95240 1.01592 0.95393 1.21610 0.98153 0.99790 0.96294 1.21440 0.97347 0.98082 1.00461 1.18553 0.91934 0.91991 0.91490 1.19664 1.15088 0.95168 1.18428 0.90630 1.26686 0.96682 0.93764 1.00246 1.69762 1.32021 1.04176 1.36891 0.85301 0.78283 0.79887 0.77391 1.18631 1.18629 1.18237 1.22096 0.86621 0.95050 1.12013 1.98318 1.08181 1.98390 1.97043 1.22618 0.89054 0.95783 0.92825 1.67399 1.05623 1.31957 1.21139 0.87611 0.91756 0.91968 0.91593 0.91349 0.85114 0.91597 0.90483 0.92389 0.85308 0.86373 0.89331 0.78458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 10.28 71.98 0.74 -2.02 16 2 C 0.06 1.48 6.03 71.98 0.43 1.92 16 3 O -0.32 -11.02 10.11 -90.35 -0.91 -11.94 16 4 C 0.32 12.13 7.48 84.73 0.63 12.77 16 5 C -0.17 -7.47 8.09 22.75 0.18 -7.28 16 6 C 0.09 4.23 5.01 -19.85 -0.10 4.13 16 7 C -0.02 -0.81 5.89 42.48 0.25 -0.56 16 8 N -0.44 -20.88 9.11 -171.12 -1.56 -22.43 16 9 C -0.01 -0.61 6.79 42.73 0.29 -0.32 16 10 C -0.07 -2.26 10.15 71.24 0.72 -1.53 16 11 C -0.14 -6.10 9.65 22.11 0.21 -5.89 16 12 C -0.15 -7.32 8.74 22.66 0.20 -7.12 16 13 C 0.07 3.37 5.57 -21.03 -0.12 3.25 16 14 C -0.46 -23.11 7.33 23.37 0.17 -22.94 16 15 H 0.08 3.87 6.67 -2.91 -0.02 3.85 16 16 C 0.04 2.10 5.19 85.31 0.44 2.54 16 17 N -0.80 -38.81 10.97 21.85 0.24 -38.57 16 18 Si 0.97 36.47 29.59 68.60 2.03 38.49 16 19 H -0.26 -10.01 7.11 99.48 0.71 -9.31 16 20 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 21 H -0.26 -9.18 7.11 99.48 0.71 -8.48 16 22 C -0.13 -4.96 6.37 22.70 0.14 -4.82 16 23 Cl -0.05 -1.76 27.34 -2.72 -0.07 -1.83 16 24 C 0.15 5.03 10.97 84.60 0.93 5.95 16 25 N -0.54 -18.54 9.19 -309.12 -2.84 -21.38 16 26 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 27 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 30 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 31 H 0.13 6.14 7.51 -2.91 -0.02 6.12 16 32 H 0.07 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.08 2.17 8.07 -2.39 -0.02 2.15 16 34 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 35 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 36 H 0.12 5.98 6.29 -2.91 -0.02 5.96 16 37 H 0.30 12.76 8.29 -92.71 -0.77 11.99 16 38 H 0.20 4.82 8.06 -2.91 -0.02 4.79 16 Total: -1.00 -58.77 341.04 3.11 -55.66 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 1.09 Total: 23.92 kcal Atomic # 6 Polarization: -27.06 SS G_CDS: 5.14 Total: -21.92 kcal Atomic # 7 Polarization: -78.23 SS G_CDS: -4.16 Total: -82.38 kcal Atomic # 8 Polarization: -11.02 SS G_CDS: -0.91 Total: -11.94 kcal Atomic # 14 Polarization: 36.47 SS G_CDS: 2.03 Total: 38.49 kcal Atomic # 17 Polarization: -1.76 SS G_CDS: -0.07 Total: -1.83 kcal Total: -58.77 3.11 -55.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245815988.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.546 kcal (2) G-P(sol) polarization free energy of solvation -58.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds