Wall clock time and date at job start Tue Mar 31 2020 12:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.47030 * 2 1 4 4 C 1.35706 * 117.00016 * 179.97438 * 3 2 1 5 5 N 1.32273 * 119.62472 * 0.02562 * 4 3 2 6 6 C 1.32002 * 122.01417 * 179.97438 * 5 4 3 7 7 C 1.37818 * 121.02084 * 359.71254 * 6 5 4 8 8 C 1.40148 * 119.12127 * 0.55986 * 7 6 5 9 9 C 1.47894 * 120.90750 * 179.72714 * 8 7 6 10 10 N 1.32550 * 119.98807 * 128.31519 * 9 8 7 11 11 C 1.31736 * 121.72949 * 180.02562 * 10 9 8 12 12 C 1.50703 * 119.24919 * 180.02562 * 11 10 9 13 13 C 1.38877 * 121.49847 * 0.02562 * 11 10 9 14 14 C 1.36881 * 119.79240 * 359.73336 * 13 11 10 15 15 C 1.41132 * 118.38970 * 0.53377 * 14 13 11 16 16 C 1.40904 * 120.72039 * 179.72769 * 15 14 13 17 17 H 1.08001 * 120.00138 * 147.60895 * 16 15 14 18 18 C 1.40111 * 119.99840 * 327.88009 * 16 15 14 19 19 N 1.30737 * 119.99996 * 163.96755 * 18 16 15 20 20 Si 1.86798 * 119.99749 * 343.96580 * 18 16 15 21 21 H 1.48507 * 109.46998 * 86.35868 * 20 18 16 22 22 H 1.48503 * 109.47146 * 206.35604 * 20 18 16 23 23 H 1.48494 * 109.47556 * 326.35959 * 20 18 16 24 24 C 1.38810 * 119.62684 * 179.97438 * 4 3 2 25 25 Cl 1.73600 * 120.54396 * 0.04525 * 24 4 3 26 26 H 1.08999 * 109.47031 * 60.00595 * 1 2 3 27 27 H 1.09001 * 109.46709 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46945 * 299.99932 * 1 2 3 29 29 H 1.08992 * 109.47409 * 239.99839 * 2 1 3 30 30 H 1.09005 * 109.46688 * 119.99696 * 2 1 3 31 31 H 1.08006 * 119.49219 * 180.02562 * 6 5 4 32 32 H 1.08000 * 120.43340 * 180.29119 * 7 6 5 33 33 H 1.08991 * 109.47016 * 89.99767 * 12 11 10 34 34 H 1.08998 * 109.46531 * 210.00227 * 12 11 10 35 35 H 1.09004 * 109.46539 * 329.99831 * 12 11 10 36 36 H 1.08009 * 120.10149 * 180.02562 * 13 11 10 37 37 H 1.08007 * 120.80846 * 180.25856 * 14 13 11 38 38 H 0.96998 * 120.00042 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3517 1.5251 0.0005 5 7 4.1506 0.4709 0.0005 6 6 5.4653 0.5891 0.0005 7 6 6.0669 1.8291 -0.0054 8 6 5.2631 2.9771 0.0005 9 6 5.8669 4.3272 0.0006 10 7 5.4837 5.2244 -0.8967 11 6 5.9988 6.4365 -0.9282 12 6 5.5214 7.4125 -1.9725 13 6 6.9718 6.8352 -0.0211 14 6 7.4095 5.9594 0.9355 15 6 6.8574 4.6608 0.9595 16 6 7.2763 3.7181 1.9192 17 1 6.5793 2.9837 2.2950 18 6 8.5957 3.7370 2.3903 19 7 8.9088 3.0922 3.4836 20 14 9.9075 4.6835 1.4560 21 1 9.9086 6.0998 1.9029 22 1 11.2377 4.0794 1.7221 23 1 9.6189 4.6239 0.0006 24 6 3.8739 2.8112 0.0000 25 17 2.8205 4.1911 -0.0001 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 6.0791 -0.2996 0.0001 32 1 7.1435 1.9148 -0.0100 33 1 4.6737 7.9758 -1.5827 34 1 6.3295 8.0994 -2.2241 35 1 5.2159 6.8680 -2.8660 36 1 7.3784 7.8347 -0.0672 37 1 8.1625 6.2535 1.6518 38 1 9.8221 3.1056 3.8100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245843190.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:48 Heat of formation + Delta-G solvation = 8.589834 kcal Electronic energy + Delta-G solvation = -23960.753873 eV Core-core repulsion = 20407.823701 eV Total energy + Delta-G solvation = -3552.930172 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.21032 -38.92723 -37.54494 -35.81156 -34.39611 -33.00051 -31.83790 -31.76991 -30.17496 -29.38306 -28.09777 -25.10398 -23.60744 -22.87871 -22.49350 -21.34230 -20.49726 -17.92955 -17.64417 -16.58765 -16.08755 -15.83347 -15.80807 -15.21814 -14.53855 -14.13298 -13.83199 -13.73300 -13.56553 -13.36611 -13.16957 -12.61649 -12.34192 -12.17475 -12.08286 -12.00096 -11.64570 -11.60544 -11.43545 -11.35182 -11.24552 -10.89161 -10.56541 -10.47176 -10.35481 -10.14603 -9.62805 -9.28884 -9.11962 -8.54783 -8.23575 -7.92410 -7.69761 -7.23815 -4.75968 1.38341 1.62795 2.29387 2.54644 2.80953 2.90036 3.00475 3.09684 3.24963 3.71630 4.14636 4.31126 4.69547 4.98817 5.07264 5.08008 5.16270 5.36423 5.46819 5.59560 5.70029 5.74240 5.81064 5.87897 5.89092 6.03568 6.05344 6.19892 6.24916 6.30656 6.40358 6.52962 6.71089 6.75210 6.79751 6.99299 7.25728 7.40364 7.54040 7.62897 8.01597 8.19071 8.22654 8.42259 9.24626 9.75505 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.005298 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.610251 B = 5283.472976 C = 6750.188963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.068 3.932 3 O -0.301 6.301 4 C 0.321 3.679 5 N -0.542 5.542 6 C 0.126 3.874 7 C -0.166 4.166 8 C 0.107 3.893 9 C 0.021 3.979 10 N -0.418 5.418 11 C -0.009 4.009 12 C -0.075 4.075 13 C -0.109 4.109 14 C -0.204 4.204 15 C 0.068 3.932 16 C -0.421 4.421 17 H 0.100 0.900 18 C 0.084 3.916 19 N -0.785 5.785 20 Si 0.910 3.090 21 H -0.263 1.263 22 H -0.285 1.285 23 H -0.247 1.247 24 C -0.099 4.099 25 Cl -0.044 7.044 26 H 0.063 0.937 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.064 0.936 31 H 0.160 0.840 32 H 0.148 0.852 33 H 0.053 0.947 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.106 0.894 37 H 0.117 0.883 38 H 0.291 0.709 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.379 -2.549 -5.128 7.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.008 4.008 3 O -0.209 6.209 4 C 0.141 3.859 5 N -0.267 5.267 6 C -0.028 4.028 7 C -0.187 4.187 8 C 0.098 3.902 9 C -0.119 4.119 10 N -0.125 5.125 11 C -0.150 4.150 12 C -0.132 4.132 13 C -0.129 4.129 14 C -0.229 4.229 15 C 0.063 3.937 16 C -0.449 4.449 17 H 0.117 0.883 18 C -0.138 4.138 19 N -0.407 5.407 20 Si 0.735 3.265 21 H -0.189 1.189 22 H -0.212 1.212 23 H -0.170 1.170 24 C -0.129 4.129 25 Cl -0.015 7.015 26 H 0.082 0.918 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.177 0.823 32 H 0.166 0.834 33 H 0.071 0.929 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.135 0.865 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -6.543 -3.418 -5.504 9.208 hybrid contribution 1.737 1.323 0.613 2.268 sum -4.806 -2.095 -4.892 7.170 Atomic orbital electron populations 1.21802 0.93412 1.02437 1.03265 1.22519 0.94376 0.81617 1.02279 1.86279 1.16599 1.29918 1.88089 1.19224 0.84291 0.88195 0.94162 1.67286 1.06903 1.31387 1.21148 1.22225 0.88718 0.97362 0.94484 1.22165 1.02163 0.91093 1.03260 1.18470 0.88766 0.93309 0.89661 1.19011 1.03852 0.91535 0.97470 1.66874 1.22767 1.01249 1.21652 1.20282 1.00841 0.92898 1.00988 1.20293 0.99773 0.96391 0.96765 1.21252 0.97237 0.98854 0.95567 1.21319 1.05598 0.94044 1.01963 1.18325 0.91527 0.92484 0.91390 1.19485 0.96689 1.13125 1.15606 0.88259 1.26229 1.00316 0.93795 0.93440 1.69621 1.22087 1.32608 1.16419 0.86386 0.78174 0.79534 0.82382 1.18876 1.21174 1.17027 1.20988 0.91510 0.86801 1.13642 1.98326 1.64785 1.41478 1.96938 0.91760 0.90640 0.91724 0.91885 0.91811 0.82289 0.83384 0.92856 0.92762 0.92241 0.87572 0.86504 0.89811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 10.28 37.16 0.38 -1.17 16 2 C 0.07 0.91 6.03 37.16 0.22 1.13 16 3 O -0.30 -5.24 9.59 -18.82 -0.18 -5.42 16 4 C 0.32 6.17 7.48 -17.15 -0.13 6.05 16 5 N -0.54 -9.78 9.19 -13.39 -0.12 -9.91 16 6 C 0.13 2.14 11.16 -17.63 -0.20 1.94 16 7 C -0.17 -3.20 8.30 -39.02 -0.32 -3.52 16 8 C 0.11 2.32 5.04 -104.60 -0.53 1.79 16 9 C 0.02 0.48 5.89 -82.23 -0.48 0.00 16 10 N -0.42 -9.46 9.09 -5.44 -0.05 -9.51 16 11 C -0.01 -0.19 6.79 -82.40 -0.56 -0.75 16 12 C -0.07 -1.23 10.15 36.01 0.37 -0.86 16 13 C -0.11 -2.23 9.65 -39.84 -0.38 -2.62 16 14 C -0.20 -4.57 7.37 -38.98 -0.29 -4.86 16 15 C 0.07 1.62 5.07 -106.42 -0.54 1.08 16 16 C -0.42 -10.28 7.64 -37.87 -0.29 -10.57 16 17 H 0.10 2.60 7.19 -52.49 -0.38 2.22 16 18 C 0.08 1.98 5.44 -17.32 -0.09 1.88 16 19 N -0.79 -18.83 13.92 55.56 0.77 -18.06 16 20 Si 0.91 18.70 24.70 -169.99 -4.20 14.50 16 21 H -0.26 -5.24 6.30 56.52 0.36 -4.89 16 22 H -0.28 -5.63 7.11 56.52 0.40 -5.23 16 23 H -0.25 -5.25 7.11 56.52 0.40 -4.85 16 24 C -0.10 -2.07 6.38 -38.74 -0.25 -2.31 16 25 Cl -0.04 -0.89 26.88 -51.86 -1.39 -2.29 16 26 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.82 8.10 -51.93 -0.42 0.40 16 30 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 31 H 0.16 2.12 8.06 -52.48 -0.42 1.69 16 32 H 0.15 2.82 7.50 -52.49 -0.39 2.42 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 35 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 37 H 0.12 2.55 4.72 -52.48 -0.25 2.30 16 38 H 0.29 6.30 8.29 -40.82 -0.34 5.96 16 LS Contribution 335.36 15.07 5.05 5.05 Total: -1.00 -27.01 335.36 -7.63 -34.64 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.42 Total: 3.79 kcal Atomic # 6 Polarization: -9.70 SS G_CDS: -3.09 Total: -12.79 kcal Atomic # 7 Polarization: -38.08 SS G_CDS: 0.60 Total: -37.48 kcal Atomic # 8 Polarization: -5.24 SS G_CDS: -0.18 Total: -5.42 kcal Atomic # 14 Polarization: 18.70 SS G_CDS: -4.20 Total: 14.50 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.39 Total: -2.29 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.01 -7.63 -34.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245843190.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.226 kcal (2) G-P(sol) polarization free energy of solvation -27.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds