Wall clock time and date at job start Tue Mar 31 2020 12:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42896 * 109.47030 * 2 1 4 4 C 1.35706 * 117.00016 * 179.97438 * 3 2 1 5 5 N 1.32273 * 119.62472 * 0.02562 * 4 3 2 6 6 C 1.32002 * 122.01417 * 179.97438 * 5 4 3 7 7 C 1.37818 * 121.02084 * 359.71254 * 6 5 4 8 8 C 1.40148 * 119.12127 * 0.55986 * 7 6 5 9 9 C 1.47894 * 120.90750 * 179.72714 * 8 7 6 10 10 N 1.32550 * 119.98807 * 128.31519 * 9 8 7 11 11 C 1.31736 * 121.72949 * 180.02562 * 10 9 8 12 12 C 1.50703 * 119.24919 * 180.02562 * 11 10 9 13 13 C 1.38877 * 121.49847 * 0.02562 * 11 10 9 14 14 C 1.36881 * 119.79240 * 359.73336 * 13 11 10 15 15 C 1.41132 * 118.38970 * 0.53377 * 14 13 11 16 16 C 1.40904 * 120.72039 * 179.72769 * 15 14 13 17 17 H 1.08001 * 120.00138 * 147.60895 * 16 15 14 18 18 C 1.40111 * 119.99840 * 327.88009 * 16 15 14 19 19 N 1.30737 * 119.99996 * 163.96755 * 18 16 15 20 20 Si 1.86798 * 119.99749 * 343.96580 * 18 16 15 21 21 H 1.48507 * 109.46998 * 86.35868 * 20 18 16 22 22 H 1.48503 * 109.47146 * 206.35604 * 20 18 16 23 23 H 1.48494 * 109.47556 * 326.35959 * 20 18 16 24 24 C 1.38810 * 119.62684 * 179.97438 * 4 3 2 25 25 Cl 1.73600 * 120.54396 * 0.04525 * 24 4 3 26 26 H 1.08999 * 109.47031 * 60.00595 * 1 2 3 27 27 H 1.09001 * 109.46709 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.46945 * 299.99932 * 1 2 3 29 29 H 1.08992 * 109.47409 * 239.99839 * 2 1 3 30 30 H 1.09005 * 109.46688 * 119.99696 * 2 1 3 31 31 H 1.08006 * 119.49219 * 180.02562 * 6 5 4 32 32 H 1.08000 * 120.43340 * 180.29119 * 7 6 5 33 33 H 1.08991 * 109.47016 * 89.99767 * 12 11 10 34 34 H 1.08998 * 109.46531 * 210.00227 * 12 11 10 35 35 H 1.09004 * 109.46539 * 329.99831 * 12 11 10 36 36 H 1.08009 * 120.10149 * 180.02562 * 13 11 10 37 37 H 1.08007 * 120.80846 * 180.25856 * 14 13 11 38 38 H 0.96998 * 120.00042 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3517 1.5251 0.0005 5 7 4.1506 0.4709 0.0005 6 6 5.4653 0.5891 0.0005 7 6 6.0669 1.8291 -0.0054 8 6 5.2631 2.9771 0.0005 9 6 5.8669 4.3272 0.0006 10 7 5.4837 5.2244 -0.8967 11 6 5.9988 6.4365 -0.9282 12 6 5.5214 7.4125 -1.9725 13 6 6.9718 6.8352 -0.0211 14 6 7.4095 5.9594 0.9355 15 6 6.8574 4.6608 0.9595 16 6 7.2763 3.7181 1.9192 17 1 6.5793 2.9837 2.2950 18 6 8.5957 3.7370 2.3903 19 7 8.9088 3.0922 3.4836 20 14 9.9075 4.6835 1.4560 21 1 9.9086 6.0998 1.9029 22 1 11.2377 4.0794 1.7221 23 1 9.6189 4.6239 0.0006 24 6 3.8739 2.8112 0.0000 25 17 2.8205 4.1911 -0.0001 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 6.0791 -0.2996 0.0001 32 1 7.1435 1.9148 -0.0100 33 1 4.6737 7.9758 -1.5827 34 1 6.3295 8.0994 -2.2241 35 1 5.2159 6.8680 -2.8660 36 1 7.3784 7.8347 -0.0672 37 1 8.1625 6.2535 1.6518 38 1 9.8221 3.1056 3.8100 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245843190.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:47 Heat of formation + Delta-G solvation = -7.404167 kcal Electronic energy + Delta-G solvation = -23961.447425 eV Core-core repulsion = 20407.823701 eV Total energy + Delta-G solvation = -3553.623724 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.68110 -40.55193 -38.93398 -37.38065 -36.10951 -34.57428 -33.48952 -32.92168 -31.73228 -30.75539 -29.67898 -26.67254 -25.05799 -24.34130 -23.86729 -22.92006 -22.02417 -19.47379 -19.28902 -18.04705 -17.52847 -17.38591 -17.31063 -16.78244 -16.12556 -15.60761 -15.35827 -15.03733 -15.01468 -14.87038 -14.73206 -13.96059 -13.72041 -13.57762 -13.39728 -13.29409 -13.17727 -13.02963 -12.89638 -12.80381 -12.52082 -12.47480 -12.09356 -11.92560 -11.86413 -11.66752 -11.33358 -10.80311 -10.68633 -10.23868 -9.92595 -9.43112 -9.34254 -8.97762 -6.56078 -0.18514 0.11811 0.63230 0.84511 1.24090 1.24985 1.37115 1.46130 1.93936 2.05506 2.55697 2.67924 3.29865 3.37268 3.53118 3.90487 4.09301 4.11168 4.18702 4.21614 4.28360 4.37126 4.48619 4.52527 4.61818 4.78214 4.85670 4.92388 4.94939 4.96898 4.98521 5.19655 5.20555 5.22652 5.32463 5.40827 5.57238 5.69944 5.93728 6.18390 6.19560 6.49876 6.63154 6.72033 7.55270 8.07106 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.014098 B = 0.005298 C = 0.004147 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1985.610251 B = 5283.472976 C = 6750.188963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.059 3.941 3 O -0.311 6.311 4 C 0.320 3.680 5 N -0.537 5.537 6 C 0.140 3.860 7 C -0.177 4.177 8 C 0.083 3.917 9 C 0.010 3.990 10 N -0.437 5.437 11 C -0.009 4.009 12 C -0.072 4.072 13 C -0.111 4.111 14 C -0.215 4.215 15 C 0.051 3.949 16 C -0.443 4.443 17 H 0.066 0.934 18 C 0.059 3.941 19 N -0.823 5.823 20 Si 0.956 3.044 21 H -0.250 1.250 22 H -0.272 1.272 23 H -0.260 1.260 24 C -0.120 4.120 25 Cl -0.048 7.048 26 H 0.064 0.936 27 H 0.105 0.895 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.201 0.799 32 H 0.145 0.855 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.059 0.941 36 H 0.146 0.854 37 H 0.122 0.878 38 H 0.299 0.701 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.416 -2.004 -6.424 8.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.016 4.016 3 O -0.218 6.218 4 C 0.141 3.859 5 N -0.263 5.263 6 C -0.014 4.014 7 C -0.198 4.198 8 C 0.075 3.925 9 C -0.128 4.128 10 N -0.145 5.145 11 C -0.150 4.150 12 C -0.130 4.130 13 C -0.130 4.130 14 C -0.241 4.241 15 C 0.046 3.954 16 C -0.472 4.472 17 H 0.084 0.916 18 C -0.160 4.160 19 N -0.447 5.447 20 Si 0.779 3.221 21 H -0.175 1.175 22 H -0.198 1.198 23 H -0.184 1.184 24 C -0.151 4.151 25 Cl -0.019 7.019 26 H 0.083 0.917 27 H 0.123 0.877 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.082 0.918 31 H 0.218 0.782 32 H 0.163 0.837 33 H 0.085 0.915 34 H 0.103 0.897 35 H 0.078 0.922 36 H 0.163 0.837 37 H 0.139 0.861 38 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.605 -2.882 -6.793 9.903 hybrid contribution 1.583 1.158 0.908 2.162 sum -5.022 -1.723 -5.885 7.926 Atomic orbital electron populations 1.21828 0.90812 1.04361 1.03193 1.22872 0.96392 0.79809 1.02480 1.86284 1.15493 1.32449 1.87616 1.19331 0.85265 0.87899 0.93447 1.67442 1.07112 1.30704 1.21012 1.22841 0.88721 0.97914 0.91889 1.22245 1.01973 0.91561 1.04026 1.18663 0.89531 0.93507 0.90845 1.19314 1.03719 0.92438 0.97336 1.67006 1.23564 1.02126 1.21837 1.21170 0.99692 0.92879 1.01275 1.20394 1.01303 0.95889 0.95366 1.21665 0.96687 1.00229 0.94462 1.21520 1.05890 0.93877 1.02790 1.18492 0.92219 0.93117 0.91529 1.19251 0.96999 1.13612 1.17302 0.91606 1.26736 1.01201 0.94300 0.93748 1.69637 1.23024 1.34384 1.17612 0.85676 0.76700 0.79341 0.80350 1.17484 1.19751 1.18400 1.21114 0.91403 0.87506 1.15060 1.98303 1.64744 1.41811 1.97061 0.91662 0.87670 0.91945 0.91396 0.91831 0.78190 0.83745 0.91537 0.89692 0.92222 0.83668 0.86053 0.88966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.68 10.28 71.98 0.74 -1.94 16 2 C 0.06 1.51 6.03 71.98 0.43 1.94 16 3 O -0.31 -10.70 9.59 -90.27 -0.87 -11.56 16 4 C 0.32 12.33 7.48 84.76 0.63 12.96 16 5 N -0.54 -19.01 9.19 -309.12 -2.84 -21.85 16 6 C 0.14 4.68 11.16 84.57 0.94 5.62 16 7 C -0.18 -6.99 8.30 22.63 0.19 -6.80 16 8 C 0.08 3.71 5.04 -19.85 -0.10 3.61 16 9 C 0.01 0.48 5.89 42.48 0.25 0.73 16 10 N -0.44 -19.67 9.09 -171.11 -1.56 -21.22 16 11 C -0.01 -0.34 6.79 42.73 0.29 -0.05 16 12 C -0.07 -2.14 10.15 71.24 0.72 -1.42 16 13 C -0.11 -4.28 9.65 22.10 0.21 -4.06 16 14 C -0.22 -9.48 7.37 22.66 0.17 -9.31 16 15 C 0.05 2.49 5.07 -21.03 -0.11 2.38 16 16 C -0.44 -22.51 7.64 23.38 0.18 -22.33 16 17 H 0.07 3.68 7.19 -2.91 -0.02 3.66 16 18 C 0.06 2.81 5.44 85.31 0.46 3.27 16 19 N -0.82 -40.47 13.92 21.85 0.30 -40.17 16 20 Si 0.96 38.15 24.70 68.60 1.69 39.84 16 21 H -0.25 -9.34 6.30 99.48 0.63 -8.72 16 22 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 23 H -0.26 -10.81 7.11 99.48 0.71 -10.11 16 24 C -0.12 -5.13 6.38 22.81 0.15 -4.98 16 25 Cl -0.05 -1.97 26.88 -2.72 -0.07 -2.04 16 26 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 27 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.66 8.10 -2.39 -0.02 1.64 16 30 H 0.06 1.62 8.10 -2.38 -0.02 1.60 16 31 H 0.20 4.88 8.06 -2.91 -0.02 4.86 16 32 H 0.14 5.71 7.50 -2.91 -0.02 5.69 16 33 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 34 H 0.08 2.02 8.07 -2.39 -0.02 2.00 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.15 4.40 8.06 -2.91 -0.02 4.38 16 37 H 0.12 5.15 4.72 -2.91 -0.01 5.14 16 38 H 0.30 13.17 8.29 -92.71 -0.77 12.40 16 Total: -1.00 -59.83 335.36 2.84 -56.99 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 1.01 Total: 20.38 kcal Atomic # 6 Polarization: -25.53 SS G_CDS: 5.17 Total: -20.36 kcal Atomic # 7 Polarization: -79.15 SS G_CDS: -4.09 Total: -83.24 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: -0.87 Total: -11.56 kcal Atomic # 14 Polarization: 38.15 SS G_CDS: 1.69 Total: 39.84 kcal Atomic # 17 Polarization: -1.97 SS G_CDS: -0.07 Total: -2.04 kcal Total: -59.83 2.84 -56.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245843190.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.583 kcal (2) G-P(sol) polarization free energy of solvation -59.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.404 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds