Wall clock time and date at job start Tue Mar 31 2020 12:20:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42906 * 109.46824 * 2 1 4 4 C 1.35717 * 116.99769 * 179.97438 * 3 2 1 5 5 N 1.32270 * 119.62766 * 0.02562 * 4 3 2 6 6 C 1.32003 * 121.99738 * 179.97438 * 5 4 3 7 7 C 1.37815 * 121.01263 * 359.97438 * 6 5 4 8 8 C 1.40102 * 119.13615 * 359.97438 * 7 6 5 9 9 C 1.48025 * 120.90881 * 180.02562 * 8 7 6 10 10 C 1.39856 * 119.44334 * 359.97438 * 9 8 7 11 11 C 1.36644 * 119.46623 * 180.02562 * 10 9 8 12 12 C 1.41282 * 118.40805 * 359.97438 * 11 10 9 13 13 C 1.41061 * 120.55494 * 179.72994 * 12 11 10 14 14 H 1.07997 * 119.99975 * 150.04616 * 13 12 11 15 15 C 1.40065 * 119.99889 * 330.04183 * 13 12 11 16 16 N 1.30767 * 119.99910 * 162.09342 * 15 13 12 17 17 Si 1.86795 * 120.00211 * 342.09156 * 15 13 12 18 18 H 1.48507 * 109.46930 * 95.37967 * 17 15 13 19 19 H 1.48496 * 109.47381 * 215.37371 * 17 15 13 20 20 H 1.48496 * 109.47239 * 335.38225 * 17 15 13 21 21 C 1.40966 * 118.88571 * 0.02562 * 12 11 10 22 22 C 1.50696 * 119.80051 * 180.02562 * 21 12 11 23 23 N 1.31250 * 120.40078 * 0.02562 * 21 12 11 24 24 C 1.38809 * 119.62285 * 180.28043 * 4 3 2 25 25 Cl 1.73602 * 120.54508 * 0.03012 * 24 4 3 26 26 H 1.08994 * 109.47652 * 60.00039 * 1 2 3 27 27 H 1.09003 * 109.46963 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47530 * 299.99221 * 1 2 3 29 29 H 1.08997 * 109.47530 * 240.00779 * 2 1 3 30 30 H 1.08994 * 109.47652 * 119.99961 * 2 1 3 31 31 H 1.08001 * 119.49316 * 180.02562 * 6 5 4 32 32 H 1.08004 * 120.43557 * 179.97438 * 7 6 5 33 33 H 1.07995 * 120.26388 * 359.97438 * 10 9 8 34 34 H 1.07999 * 120.79767 * 180.02562 * 11 10 9 35 35 H 0.97000 * 120.00325 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47359 * 89.99900 * 22 21 12 37 37 H 1.08993 * 109.47021 * 210.00143 * 22 21 12 38 38 H 1.09006 * 109.47097 * 330.00021 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3517 1.5252 0.0005 5 7 4.1506 0.4710 0.0005 6 6 5.4653 0.5897 0.0005 7 6 6.0662 1.8300 0.0000 8 6 5.2624 2.9775 -0.0010 9 6 5.8664 4.3289 -0.0022 10 6 7.2588 4.4596 -0.0016 11 6 7.8169 5.7069 -0.0021 12 6 6.9570 6.8279 -0.0037 13 6 7.4844 8.1362 0.0014 14 1 6.9369 8.9410 -0.4665 15 6 8.7182 8.3915 0.6133 16 7 9.3740 9.4870 0.3306 17 14 9.4268 7.1673 1.8333 18 1 10.3719 6.2609 1.1327 19 1 10.1463 7.8984 2.9071 20 1 8.3258 6.3691 2.4298 21 6 5.5632 6.6171 -0.0042 22 6 4.6271 7.7980 -0.0065 23 7 5.0758 5.3984 -0.0027 24 6 3.8738 2.8114 0.0065 25 17 2.8203 4.1912 0.0140 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 6.0794 -0.2987 0.0001 32 1 7.1428 1.9163 0.0005 33 1 7.8879 3.5818 0.0000 34 1 8.8895 5.8328 -0.0021 35 1 10.2282 9.6640 0.7547 36 1 4.4020 8.0812 -1.0348 37 1 3.7037 7.5307 0.5072 38 1 5.0986 8.6364 0.5063 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001245843599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:51 Heat of formation + Delta-G solvation = 14.890978 kcal Electronic energy + Delta-G solvation = -23497.943138 eV Core-core repulsion = 19945.286203 eV Total energy + Delta-G solvation = -3552.656934 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.34213 -38.95562 -37.70739 -35.72758 -34.46089 -33.02203 -31.96252 -31.77123 -30.60094 -29.55690 -27.30874 -25.78643 -23.69419 -23.10627 -22.45437 -21.29302 -20.35758 -18.21554 -17.63884 -16.69720 -16.25273 -16.20536 -15.59211 -15.11866 -14.76294 -14.07947 -13.97617 -13.89011 -13.60642 -13.40171 -13.01879 -12.73019 -12.38661 -12.31431 -12.12173 -12.01491 -11.71594 -11.54978 -11.49144 -11.32550 -11.17667 -11.00490 -10.69096 -10.50153 -10.35491 -10.01878 -9.75548 -9.44627 -9.28631 -8.59034 -8.07722 -7.96981 -7.60690 -7.36959 -4.81338 1.10426 1.38781 2.39215 2.59230 2.86581 2.87856 2.99354 3.08763 3.11394 3.67615 3.92067 4.36803 4.52803 4.87957 4.96774 5.01218 5.18030 5.19313 5.27161 5.38052 5.58618 5.66101 5.70109 5.77518 5.91827 5.95022 6.04669 6.07073 6.29856 6.47544 6.50122 6.55429 6.62651 6.65607 6.74241 7.08777 7.26285 7.38598 7.41640 7.56489 7.90199 8.02888 8.18440 8.32543 9.29222 9.60042 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.024234 B = 0.003743 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.113732 B = 7478.510990 C = 8401.055078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.068 3.932 3 O -0.299 6.299 4 C 0.328 3.672 5 N -0.554 5.554 6 C 0.135 3.865 7 C -0.217 4.217 8 C 0.098 3.902 9 C -0.028 4.028 10 C -0.084 4.084 11 C -0.219 4.219 12 C 0.054 3.946 13 C -0.398 4.398 14 H 0.105 0.895 15 C 0.080 3.920 16 N -0.775 5.775 17 Si 0.914 3.086 18 H -0.265 1.265 19 H -0.284 1.284 20 H -0.242 1.242 21 C 0.035 3.965 22 C -0.075 4.075 23 N -0.410 5.410 24 C -0.112 4.112 25 Cl -0.019 7.019 26 H 0.064 0.936 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.158 0.842 32 H 0.140 0.860 33 H 0.108 0.892 34 H 0.112 0.888 35 H 0.294 0.706 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.339 -12.209 0.754 13.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.008 4.008 3 O -0.207 6.207 4 C 0.149 3.851 5 N -0.280 5.280 6 C -0.018 4.018 7 C -0.239 4.239 8 C 0.090 3.910 9 C -0.158 4.158 10 C -0.104 4.104 11 C -0.243 4.243 12 C 0.048 3.952 13 C -0.425 4.425 14 H 0.122 0.878 15 C -0.144 4.144 16 N -0.397 5.397 17 Si 0.739 3.261 18 H -0.191 1.191 19 H -0.211 1.211 20 H -0.165 1.165 21 C -0.116 4.116 22 C -0.132 4.132 23 N -0.118 5.118 24 C -0.143 4.143 25 Cl 0.010 6.990 26 H 0.083 0.917 27 H 0.094 0.906 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.175 0.825 32 H 0.157 0.843 33 H 0.126 0.874 34 H 0.129 0.871 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -7.725 -12.688 0.758 14.874 hybrid contribution 1.994 0.361 0.412 2.068 sum -5.731 -12.327 1.171 13.644 Atomic orbital electron populations 1.21805 0.93293 1.02502 1.03375 1.22529 0.94496 0.81526 1.02218 1.86301 1.16586 1.29978 1.87827 1.19331 0.84268 0.88345 0.93142 1.67297 1.06715 1.31538 1.22409 1.22136 0.88950 0.96988 0.93766 1.21970 1.01259 0.91742 1.08885 1.18717 0.89516 0.93138 0.89631 1.18387 0.89290 0.89633 1.18488 1.21170 0.94575 0.97131 0.97553 1.20987 0.98735 0.92555 1.12042 1.18581 0.92663 0.93644 0.90333 1.19729 1.01128 0.94617 1.27061 0.87766 1.26395 0.95309 0.96074 0.96638 1.69641 1.12450 1.24101 1.33462 0.86233 0.80229 0.80027 0.79618 1.19074 1.21073 1.16459 1.21133 0.91454 0.91533 1.07442 1.20310 0.97098 0.94894 1.00947 1.67328 1.39083 0.98223 1.07152 1.20822 0.91783 0.87403 1.14253 1.98353 1.63861 1.40220 1.96525 0.91673 0.90594 0.91671 0.91870 0.91875 0.82506 0.84261 0.87434 0.87075 0.89529 0.92808 0.92779 0.91080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 37.15 0.38 -1.03 16 2 C 0.07 0.82 6.03 37.15 0.22 1.05 16 3 O -0.30 -4.82 9.59 -18.86 -0.18 -5.00 16 4 C 0.33 5.76 7.48 -17.15 -0.13 5.64 16 5 N -0.55 -8.87 9.19 -13.39 -0.12 -9.00 16 6 C 0.14 1.92 11.16 -17.63 -0.20 1.72 16 7 C -0.22 -3.41 9.48 -39.04 -0.37 -3.78 16 8 C 0.10 1.90 5.91 -104.58 -0.62 1.28 16 9 C -0.03 -0.60 6.74 -82.74 -0.56 -1.16 16 10 C -0.08 -1.73 9.40 -39.55 -0.37 -2.11 16 11 C -0.22 -4.89 7.20 -39.00 -0.28 -5.17 16 12 C 0.05 1.26 5.11 -106.64 -0.55 0.71 16 13 C -0.40 -9.51 8.54 -37.83 -0.32 -9.83 16 14 H 0.10 2.55 7.23 -52.49 -0.38 2.17 16 15 C 0.08 1.85 5.42 -17.32 -0.09 1.75 16 16 N -0.78 -18.23 13.92 55.55 0.77 -17.46 16 17 Si 0.91 18.69 24.53 -169.99 -4.17 14.53 16 18 H -0.26 -5.21 6.71 56.52 0.38 -4.83 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.19 16 20 H -0.24 -5.22 6.85 56.52 0.39 -4.83 16 21 C 0.04 0.80 6.86 -81.81 -0.56 0.24 16 22 C -0.07 -1.47 9.59 36.00 0.35 -1.13 16 23 N -0.41 -9.29 6.89 -5.39 -0.04 -9.32 16 24 C -0.11 -2.16 6.39 -38.76 -0.25 -2.41 16 25 Cl -0.02 -0.36 25.41 -51.86 -1.32 -1.68 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 30 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 31 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 32 H 0.14 1.88 6.28 -52.48 -0.33 1.55 16 33 H 0.11 1.85 6.24 -52.49 -0.33 1.53 16 34 H 0.11 2.39 4.83 -52.49 -0.25 2.13 16 35 H 0.29 6.20 8.29 -40.82 -0.34 5.86 16 36 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.07 1.37 6.84 -51.93 -0.36 1.01 16 LS Contribution 330.49 15.07 4.98 4.98 Total: -1.00 -26.72 330.49 -7.61 -34.34 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -4.19 Total: 2.84 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -3.34 Total: -14.22 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.61 Total: -35.78 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.18 Total: -5.00 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.17 Total: 14.53 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.32 Total: -1.68 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.72 -7.61 -34.34 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245843599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.228 kcal (2) G-P(sol) polarization free energy of solvation -26.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.337 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds