Wall clock time and date at job start Tue Mar 31 2020 12:20:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 O 1.42906 * 109.46824 * 2 1 4 4 C 1.35717 * 116.99769 * 179.97438 * 3 2 1 5 5 N 1.32270 * 119.62766 * 0.02562 * 4 3 2 6 6 C 1.32003 * 121.99738 * 179.97438 * 5 4 3 7 7 C 1.37815 * 121.01263 * 359.97438 * 6 5 4 8 8 C 1.40102 * 119.13615 * 359.97438 * 7 6 5 9 9 C 1.48025 * 120.90881 * 180.02562 * 8 7 6 10 10 C 1.39856 * 119.44334 * 359.97438 * 9 8 7 11 11 C 1.36644 * 119.46623 * 180.02562 * 10 9 8 12 12 C 1.41282 * 118.40805 * 359.97438 * 11 10 9 13 13 C 1.41061 * 120.55494 * 179.72994 * 12 11 10 14 14 H 1.07997 * 119.99975 * 150.04616 * 13 12 11 15 15 C 1.40065 * 119.99889 * 330.04183 * 13 12 11 16 16 N 1.30767 * 119.99910 * 162.09342 * 15 13 12 17 17 Si 1.86795 * 120.00211 * 342.09156 * 15 13 12 18 18 H 1.48507 * 109.46930 * 95.37967 * 17 15 13 19 19 H 1.48496 * 109.47381 * 215.37371 * 17 15 13 20 20 H 1.48496 * 109.47239 * 335.38225 * 17 15 13 21 21 C 1.40966 * 118.88571 * 0.02562 * 12 11 10 22 22 C 1.50696 * 119.80051 * 180.02562 * 21 12 11 23 23 N 1.31250 * 120.40078 * 0.02562 * 21 12 11 24 24 C 1.38809 * 119.62285 * 180.28043 * 4 3 2 25 25 Cl 1.73602 * 120.54508 * 0.03012 * 24 4 3 26 26 H 1.08994 * 109.47652 * 60.00039 * 1 2 3 27 27 H 1.09003 * 109.46963 * 179.97438 * 1 2 3 28 28 H 1.08997 * 109.47530 * 299.99221 * 1 2 3 29 29 H 1.08997 * 109.47530 * 240.00779 * 2 1 3 30 30 H 1.08994 * 109.47652 * 119.99961 * 2 1 3 31 31 H 1.08001 * 119.49316 * 180.02562 * 6 5 4 32 32 H 1.08004 * 120.43557 * 179.97438 * 7 6 5 33 33 H 1.07995 * 120.26388 * 359.97438 * 10 9 8 34 34 H 1.07999 * 120.79767 * 180.02562 * 11 10 9 35 35 H 0.97000 * 120.00325 * 179.97438 * 16 15 13 36 36 H 1.09002 * 109.47359 * 89.99900 * 22 21 12 37 37 H 1.08993 * 109.47021 * 210.00143 * 22 21 12 38 38 H 1.09006 * 109.47097 * 330.00021 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3474 0.0000 4 6 3.3517 1.5252 0.0005 5 7 4.1506 0.4710 0.0005 6 6 5.4653 0.5897 0.0005 7 6 6.0662 1.8300 0.0000 8 6 5.2624 2.9775 -0.0010 9 6 5.8664 4.3289 -0.0022 10 6 7.2588 4.4596 -0.0016 11 6 7.8169 5.7069 -0.0021 12 6 6.9570 6.8279 -0.0037 13 6 7.4844 8.1362 0.0014 14 1 6.9369 8.9410 -0.4665 15 6 8.7182 8.3915 0.6133 16 7 9.3740 9.4870 0.3306 17 14 9.4268 7.1673 1.8333 18 1 10.3719 6.2609 1.1327 19 1 10.1463 7.8984 2.9071 20 1 8.3258 6.3691 2.4298 21 6 5.5632 6.6171 -0.0042 22 6 4.6271 7.7980 -0.0065 23 7 5.0758 5.3984 -0.0027 24 6 3.8738 2.8114 0.0065 25 17 2.8203 4.1912 0.0140 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5137 0.8900 29 1 1.8933 -0.5137 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 6.0794 -0.2987 0.0001 32 1 7.1428 1.9163 0.0005 33 1 7.8879 3.5818 0.0000 34 1 8.8895 5.8328 -0.0021 35 1 10.2282 9.6640 0.7547 36 1 4.4020 8.0812 -1.0348 37 1 3.7037 7.5307 0.5072 38 1 5.0986 8.6364 0.5063 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001245843599.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:50 Heat of formation + Delta-G solvation = -0.501525 kcal Electronic energy + Delta-G solvation = -23498.610607 eV Core-core repulsion = 19945.286203 eV Total energy + Delta-G solvation = -3553.324403 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.64687 -40.56070 -38.95599 -37.17675 -36.12278 -34.55407 -33.48658 -32.89640 -32.13354 -30.75832 -28.95940 -27.33134 -24.96794 -24.43742 -23.83409 -22.70704 -21.90862 -19.68148 -19.19854 -18.01298 -17.75018 -17.31777 -17.04034 -16.68661 -16.28969 -15.43443 -15.37458 -15.20787 -14.93130 -14.85904 -14.64223 -13.99441 -13.65692 -13.60357 -13.51906 -13.36201 -13.16609 -12.99557 -12.90494 -12.68731 -12.63522 -12.44964 -12.12013 -11.93548 -11.68896 -11.64420 -11.37158 -10.78105 -10.76399 -10.27299 -9.62930 -9.35689 -9.26137 -9.06610 -6.58486 -0.34428 0.11182 0.74753 0.92283 1.24145 1.38470 1.44370 1.45811 1.96710 2.03934 2.45853 2.80693 3.33688 3.47901 3.49269 3.87070 3.95457 4.11293 4.19735 4.21277 4.28354 4.38290 4.47726 4.50844 4.62775 4.73647 4.85084 4.93479 4.96747 4.97445 4.99210 5.04729 5.18261 5.21371 5.36047 5.47796 5.58032 5.72345 5.85808 6.14635 6.21682 6.47002 6.58464 6.77126 7.58441 7.96453 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.024234 B = 0.003743 C = 0.003332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.113732 B = 7478.510990 C = 8401.055078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 O -0.314 6.314 4 C 0.323 3.677 5 N -0.548 5.548 6 C 0.149 3.851 7 C -0.207 4.207 8 C 0.070 3.930 9 C -0.026 4.026 10 C -0.087 4.087 11 C -0.228 4.228 12 C 0.040 3.960 13 C -0.432 4.432 14 H 0.080 0.920 15 C 0.053 3.947 16 N -0.813 5.813 17 Si 0.959 3.041 18 H -0.247 1.247 19 H -0.273 1.273 20 H -0.261 1.261 21 C 0.012 3.988 22 C -0.068 4.068 23 N -0.423 5.423 24 C -0.133 4.133 25 Cl -0.034 7.034 26 H 0.061 0.939 27 H 0.104 0.896 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.067 0.933 31 H 0.208 0.792 32 H 0.168 0.832 33 H 0.148 0.852 34 H 0.119 0.881 35 H 0.302 0.698 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.963 -16.254 1.115 17.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.013 4.013 3 O -0.222 6.222 4 C 0.144 3.856 5 N -0.274 5.274 6 C -0.005 4.005 7 C -0.228 4.228 8 C 0.062 3.938 9 C -0.158 4.158 10 C -0.107 4.107 11 C -0.252 4.252 12 C 0.035 3.965 13 C -0.460 4.460 14 H 0.098 0.902 15 C -0.167 4.167 16 N -0.436 5.436 17 Si 0.782 3.218 18 H -0.172 1.172 19 H -0.199 1.199 20 H -0.185 1.185 21 C -0.137 4.137 22 C -0.125 4.125 23 N -0.132 5.132 24 C -0.164 4.164 25 Cl -0.005 7.005 26 H 0.081 0.919 27 H 0.123 0.877 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.225 0.775 32 H 0.185 0.815 33 H 0.166 0.834 34 H 0.137 0.863 35 H 0.114 0.886 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.365 -16.701 1.109 18.287 hybrid contribution 1.655 1.216 0.257 2.069 sum -5.711 -15.485 1.366 16.561 Atomic orbital electron populations 1.21833 0.91182 1.04300 1.03102 1.22840 0.96165 0.79802 1.02521 1.86302 1.15970 1.32425 1.87469 1.19404 0.85142 0.88064 0.92988 1.67465 1.07595 1.30681 1.21637 1.22966 0.88529 0.98187 0.90832 1.22328 1.02423 0.90947 1.07133 1.18891 0.90065 0.93144 0.91733 1.19013 0.90087 0.90543 1.16152 1.21528 0.94665 0.97936 0.96568 1.21200 0.99114 0.92939 1.11935 1.18741 0.93262 0.93933 0.90611 1.19598 1.02241 0.94476 1.29715 0.90172 1.26899 0.95201 0.97251 0.97320 1.69648 1.13422 1.25465 1.35061 0.85556 0.79341 0.78598 0.78281 1.17183 1.19881 1.18472 1.21525 0.91921 0.92401 1.07812 1.20259 0.96837 0.94051 1.01365 1.67420 1.39617 0.98461 1.07659 1.21073 0.92000 0.87803 1.15491 1.98341 1.64377 1.41123 1.96703 0.91946 0.87716 0.91947 0.91487 0.91496 0.77538 0.81467 0.83418 0.86348 0.88649 0.92213 0.92056 0.91403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 10.28 71.98 0.74 -1.63 16 2 C 0.06 1.35 6.03 71.98 0.43 1.78 16 3 O -0.31 -9.63 9.59 -90.38 -0.87 -10.50 16 4 C 0.32 10.66 7.48 84.76 0.63 11.29 16 5 N -0.55 -15.49 9.19 -309.11 -2.84 -18.33 16 6 C 0.15 3.45 11.16 84.57 0.94 4.39 16 7 C -0.21 -5.60 9.48 22.62 0.21 -5.38 16 8 C 0.07 2.55 5.91 -19.84 -0.12 2.43 16 9 C -0.03 -1.09 6.74 41.96 0.28 -0.81 16 10 C -0.09 -3.41 9.40 22.29 0.21 -3.20 16 11 C -0.23 -9.97 7.20 22.65 0.16 -9.80 16 12 C 0.04 1.92 5.11 -21.17 -0.11 1.81 16 13 C -0.43 -21.65 8.54 23.41 0.20 -21.45 16 14 H 0.08 4.24 7.23 -2.91 -0.02 4.21 16 15 C 0.05 2.54 5.42 85.29 0.46 3.00 16 16 N -0.81 -39.47 13.92 21.85 0.30 -39.16 16 17 Si 0.96 38.26 24.53 68.60 1.68 39.94 16 18 H -0.25 -9.04 6.71 99.48 0.67 -8.38 16 19 H -0.27 -10.24 7.11 99.48 0.71 -9.53 16 20 H -0.26 -11.09 6.85 99.48 0.68 -10.41 16 21 C 0.01 0.54 6.86 43.31 0.30 0.84 16 22 C -0.07 -2.77 9.59 71.23 0.68 -2.09 16 23 N -0.42 -19.24 6.89 -170.96 -1.18 -20.42 16 24 C -0.13 -4.96 6.39 22.80 0.15 -4.81 16 25 Cl -0.03 -1.34 25.41 -2.72 -0.07 -1.41 16 26 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 27 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 28 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 29 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 30 H 0.07 1.41 8.10 -2.39 -0.02 1.39 16 31 H 0.21 2.74 8.06 -2.91 -0.02 2.72 16 32 H 0.17 3.53 6.28 -2.91 -0.02 3.51 16 33 H 0.15 4.45 6.24 -2.91 -0.02 4.43 16 34 H 0.12 4.93 4.83 -2.91 -0.01 4.92 16 35 H 0.30 13.04 8.29 -92.71 -0.77 12.27 16 36 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 37 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 38 H 0.07 2.77 6.84 -2.38 -0.02 2.76 16 Total: -1.00 -59.73 330.49 3.26 -56.48 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 1.04 Total: 17.03 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 5.18 Total: -23.62 kcal Atomic # 7 Polarization: -74.20 SS G_CDS: -3.72 Total: -77.92 kcal Atomic # 8 Polarization: -9.63 SS G_CDS: -0.87 Total: -10.50 kcal Atomic # 14 Polarization: 38.26 SS G_CDS: 1.68 Total: 39.94 kcal Atomic # 17 Polarization: -1.34 SS G_CDS: -0.07 Total: -1.41 kcal Total: -59.73 3.26 -56.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001245843599.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.977 kcal (2) G-P(sol) polarization free energy of solvation -59.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds