Wall clock time and date at job start Tue Mar 31 2020 12:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46797 * 2 1 4 4 C 1.35705 * 117.00035 * 179.97438 * 3 2 1 5 5 C 1.38623 * 119.63773 * 180.27561 * 4 3 2 6 6 C 1.39186 * 119.03486 * 180.22434 * 5 4 3 7 7 N 1.39317 * 120.83828 * 179.77959 * 6 5 4 8 8 C 1.39747 * 119.99868 * 252.36574 * 7 6 5 9 9 C 1.39346 * 119.95217 * 6.03425 * 8 7 6 10 10 C 1.38481 * 120.42258 * 179.97438 * 9 8 7 11 11 C 1.37692 * 120.32542 * 0.02562 * 10 9 8 12 12 C 1.40751 * 119.89660 * 359.97438 * 11 10 9 13 13 C 1.41406 * 120.20856 * 180.27970 * 12 11 10 14 14 H 1.08001 * 119.99889 * 331.86696 * 13 12 11 15 15 C 1.39931 * 120.00006 * 151.87483 * 13 12 11 16 16 N 1.30831 * 120.00039 * 347.75800 * 15 13 12 17 17 Si 1.86797 * 119.99759 * 167.76246 * 15 13 12 18 18 H 1.48498 * 109.47180 * 89.99830 * 17 15 13 19 19 H 1.48497 * 109.47113 * 209.99689 * 17 15 13 20 20 H 1.48495 * 109.47443 * 329.99549 * 17 15 13 21 21 C 1.38284 * 119.95193 * 186.01057 * 8 7 6 22 22 C 1.39732 * 118.32258 * 359.50969 * 6 5 4 23 23 Cl 1.73601 * 120.41220 * 180.27029 * 22 6 5 24 24 C 1.37832 * 119.17156 * 0.24505 * 22 6 5 25 25 N 1.32101 * 120.90178 * 0.02562 * 24 22 6 26 26 H 1.09005 * 109.47324 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47267 * 299.99998 * 1 2 3 28 28 H 1.09001 * 109.47077 * 60.00076 * 1 2 3 29 29 H 1.08997 * 109.47590 * 240.00177 * 2 1 3 30 30 H 1.09004 * 109.47215 * 119.99408 * 2 1 3 31 31 H 1.08007 * 120.48231 * 359.97438 * 5 4 3 32 32 H 0.96997 * 120.00043 * 72.36331 * 7 6 5 33 33 H 1.07997 * 119.78756 * 359.95737 * 9 8 7 34 34 H 1.08000 * 119.83307 * 180.02562 * 10 9 8 35 35 H 1.07996 * 120.04946 * 180.02562 * 11 10 9 36 36 H 0.96996 * 119.99884 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.16552 * 0.05100 * 21 8 7 38 38 H 1.08001 * 119.54522 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3516 1.5252 0.0005 5 6 3.8732 2.8095 0.0064 6 6 5.2549 2.9775 0.0021 7 7 5.8195 4.2511 0.0031 8 6 6.4340 4.7439 -1.1513 9 6 6.3721 4.0153 -2.3375 10 6 6.9770 4.4947 -3.4872 11 6 7.6473 5.6974 -3.4705 12 6 7.7182 6.4445 -2.2797 13 6 8.3998 7.6832 -2.2565 14 1 9.2172 7.8627 -2.9392 15 6 8.0153 8.6764 -1.3489 16 7 6.8892 8.5625 -0.6926 17 14 9.1098 10.1651 -1.0745 18 1 8.7328 11.2392 -2.0281 19 1 8.9385 10.6557 0.3166 20 1 10.5281 9.7839 -1.2937 21 6 7.1021 5.9541 -1.1148 22 6 6.0614 1.8364 0.0026 23 17 7.7912 1.9829 0.0044 24 6 5.4664 0.5931 0.0021 25 7 4.1511 0.4705 0.0007 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.2170 3.6674 0.0100 32 1 5.7861 4.7958 0.8050 33 1 5.8492 3.0706 -2.3602 34 1 6.9228 3.9224 -4.4015 35 1 8.1171 6.0672 -4.3698 36 1 6.6226 9.2511 -0.0638 37 1 7.1511 6.5194 -0.1960 38 1 6.0840 -0.2928 0.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250212946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:27 Heat of formation + Delta-G solvation = 12.878623 kcal Electronic energy + Delta-G solvation = -23228.050935 eV Core-core repulsion = 19675.306739 eV Total energy + Delta-G solvation = -3552.744196 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.71817 -38.63671 -37.56170 -36.14814 -35.27944 -33.39405 -32.19589 -30.96307 -29.72996 -29.48516 -27.60163 -25.24631 -24.03613 -23.33533 -22.19145 -21.09753 -20.24685 -18.47268 -17.42728 -16.87279 -16.47589 -16.37655 -16.05384 -15.27495 -14.79041 -14.59361 -14.40987 -14.06028 -13.92767 -12.97908 -12.95421 -12.80915 -12.68518 -12.62729 -12.31160 -11.81110 -11.70338 -11.58841 -11.28088 -11.05463 -10.90394 -10.75604 -10.72415 -10.50989 -9.95647 -9.74498 -9.61473 -9.54248 -9.27172 -8.95781 -8.33158 -7.33366 -6.76571 -6.43239 -4.36819 1.05672 1.12689 2.34919 2.82765 2.89573 3.08413 3.12687 3.13388 3.25950 3.64326 3.93689 3.96413 4.22672 4.67994 4.82292 4.85714 4.90403 4.98947 5.18453 5.40755 5.52019 5.63107 5.64649 5.73427 5.80636 5.92536 6.18679 6.25180 6.48877 6.80689 6.98919 7.09135 7.14911 7.26286 7.31408 7.68646 7.72166 7.85387 7.97897 8.10384 8.39467 8.42583 8.72366 8.94927 9.00615 10.25189 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.003310 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.974950 B = 8458.121602 C = 8993.093488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 O -0.305 6.305 4 C 0.331 3.669 5 C -0.196 4.196 6 C 0.270 3.730 7 N -0.706 5.706 8 C 0.206 3.794 9 C -0.274 4.274 10 C -0.068 4.068 11 C -0.245 4.245 12 C 0.136 3.864 13 C -0.463 4.463 14 H 0.076 0.924 15 C 0.075 3.925 16 N -0.800 5.800 17 Si 0.907 3.093 18 H -0.271 1.271 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.206 4.206 22 C -0.135 4.135 23 Cl -0.038 7.038 24 C 0.154 3.846 25 N -0.539 5.539 26 H 0.077 0.923 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.065 0.935 31 H 0.149 0.851 32 H 0.408 0.592 33 H 0.081 0.919 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.277 0.723 37 H 0.121 0.879 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.106 -13.301 4.750 15.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.009 4.009 3 O -0.212 6.212 4 C 0.152 3.848 5 C -0.219 4.219 6 C 0.165 3.835 7 N -0.338 5.338 8 C 0.111 3.889 9 C -0.297 4.297 10 C -0.087 4.087 11 C -0.265 4.265 12 C 0.133 3.867 13 C -0.493 4.493 14 H 0.094 0.906 15 C -0.141 4.141 16 N -0.426 5.426 17 Si 0.732 3.268 18 H -0.196 1.196 19 H -0.203 1.203 20 H -0.186 1.186 21 C -0.229 4.229 22 C -0.168 4.168 23 Cl -0.009 7.009 24 C -0.003 4.003 25 N -0.264 5.264 26 H 0.096 0.904 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.167 0.833 32 H 0.246 0.754 33 H 0.100 0.900 34 H 0.106 0.894 35 H 0.109 0.891 36 H 0.088 0.912 37 H 0.139 0.861 38 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -7.726 -13.877 4.830 16.601 hybrid contribution 0.874 1.516 0.403 1.796 sum -6.852 -12.361 5.233 15.071 Atomic orbital electron populations 1.21824 0.93117 1.02770 1.03380 1.22598 0.94653 0.81133 1.02526 1.86249 1.16678 1.30564 1.87751 1.19579 0.83937 0.89405 0.91871 1.21410 0.94684 0.96367 1.09466 1.17210 0.89277 0.86152 0.90832 1.41773 1.64268 1.13315 1.14395 1.17518 0.93772 0.93551 0.84061 1.19844 1.14617 1.01872 0.93327 1.20272 0.97251 0.95582 0.95625 1.20950 1.09676 0.98417 0.97479 1.17320 0.88561 0.91327 0.89513 1.19535 1.15616 0.97651 1.16505 0.90558 1.25857 0.94458 0.99741 0.94037 1.69814 1.18512 1.33429 1.20871 0.86335 0.81364 0.80948 0.78176 1.19602 1.20252 1.18601 1.20774 1.07155 0.95005 0.99989 1.22481 0.87501 0.95330 1.11462 1.98385 1.07447 1.98240 1.96834 1.22171 0.89122 0.95539 0.93446 1.67449 1.05386 1.32649 1.20956 0.90380 0.91679 0.91584 0.91562 0.91635 0.83294 0.75393 0.90048 0.89439 0.89128 0.91177 0.86087 0.81691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 10.28 37.16 0.38 -0.78 16 2 C 0.07 0.68 6.03 37.16 0.22 0.90 16 3 O -0.30 -4.09 10.11 -18.82 -0.19 -4.28 16 4 C 0.33 4.85 7.48 -17.19 -0.13 4.72 16 5 C -0.20 -3.03 9.99 -39.09 -0.39 -3.42 16 6 C 0.27 4.49 4.68 -83.55 -0.39 4.10 16 7 N -0.71 -13.07 5.03 -8.29 -0.04 -13.11 16 8 C 0.21 4.58 5.97 -83.82 -0.50 4.08 16 9 C -0.27 -6.12 8.94 -39.08 -0.35 -6.47 16 10 C -0.07 -1.56 10.02 -39.69 -0.40 -1.95 16 11 C -0.24 -6.03 9.79 -38.83 -0.38 -6.41 16 12 C 0.14 3.58 5.55 -106.85 -0.59 2.99 16 13 C -0.46 -12.19 9.06 -37.74 -0.34 -12.53 16 14 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 15 C 0.08 1.88 5.23 -17.34 -0.09 1.79 16 16 N -0.80 -20.33 10.86 55.55 0.60 -19.72 16 17 Si 0.91 18.66 29.58 -169.99 -5.03 13.63 16 18 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 21 C -0.21 -5.16 8.50 -38.67 -0.33 -5.49 16 22 C -0.14 -2.10 5.68 -39.17 -0.22 -2.32 16 23 Cl -0.04 -0.61 27.79 -51.86 -1.44 -2.05 16 24 C 0.15 2.07 10.96 -17.58 -0.19 1.88 16 25 N -0.54 -7.59 9.21 -13.40 -0.12 -7.72 16 26 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.68 8.10 -51.93 -0.42 0.26 16 30 H 0.07 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.15 2.21 8.06 -52.48 -0.42 1.79 16 32 H 0.41 7.01 8.83 -40.82 -0.36 6.65 16 33 H 0.08 1.75 6.66 -52.49 -0.35 1.40 16 34 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 35 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 36 H 0.28 6.46 8.30 -40.82 -0.34 6.12 16 37 H 0.12 3.12 6.22 -52.49 -0.33 2.79 16 38 H 0.17 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -27.85 342.80 -9.14 -36.99 By element: Atomic # 1 Polarization: 14.41 SS G_CDS: -4.39 Total: 10.02 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -3.70 Total: -18.93 kcal Atomic # 7 Polarization: -40.99 SS G_CDS: 0.44 Total: -40.55 kcal Atomic # 8 Polarization: -4.09 SS G_CDS: -0.19 Total: -4.28 kcal Atomic # 14 Polarization: 18.66 SS G_CDS: -5.03 Total: 13.63 kcal Atomic # 17 Polarization: -0.61 SS G_CDS: -1.44 Total: -2.05 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -27.85 -9.14 -36.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250212946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.868 kcal (2) G-P(sol) polarization free energy of solvation -27.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds