Wall clock time and date at job start Tue Mar 31 2020 12:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42901 * 109.46797 * 2 1 4 4 C 1.35705 * 117.00035 * 179.97438 * 3 2 1 5 5 C 1.38623 * 119.63773 * 180.27561 * 4 3 2 6 6 C 1.39186 * 119.03486 * 180.22434 * 5 4 3 7 7 N 1.39317 * 120.83828 * 179.77959 * 6 5 4 8 8 C 1.39747 * 119.99868 * 252.36574 * 7 6 5 9 9 C 1.39346 * 119.95217 * 6.03425 * 8 7 6 10 10 C 1.38481 * 120.42258 * 179.97438 * 9 8 7 11 11 C 1.37692 * 120.32542 * 0.02562 * 10 9 8 12 12 C 1.40751 * 119.89660 * 359.97438 * 11 10 9 13 13 C 1.41406 * 120.20856 * 180.27970 * 12 11 10 14 14 H 1.08001 * 119.99889 * 331.86696 * 13 12 11 15 15 C 1.39931 * 120.00006 * 151.87483 * 13 12 11 16 16 N 1.30831 * 120.00039 * 347.75800 * 15 13 12 17 17 Si 1.86797 * 119.99759 * 167.76246 * 15 13 12 18 18 H 1.48498 * 109.47180 * 89.99830 * 17 15 13 19 19 H 1.48497 * 109.47113 * 209.99689 * 17 15 13 20 20 H 1.48495 * 109.47443 * 329.99549 * 17 15 13 21 21 C 1.38284 * 119.95193 * 186.01057 * 8 7 6 22 22 C 1.39732 * 118.32258 * 359.50969 * 6 5 4 23 23 Cl 1.73601 * 120.41220 * 180.27029 * 22 6 5 24 24 C 1.37832 * 119.17156 * 0.24505 * 22 6 5 25 25 N 1.32101 * 120.90178 * 0.02562 * 24 22 6 26 26 H 1.09005 * 109.47324 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47267 * 299.99998 * 1 2 3 28 28 H 1.09001 * 109.47077 * 60.00076 * 1 2 3 29 29 H 1.08997 * 109.47590 * 240.00177 * 2 1 3 30 30 H 1.09004 * 109.47215 * 119.99408 * 2 1 3 31 31 H 1.08007 * 120.48231 * 359.97438 * 5 4 3 32 32 H 0.96997 * 120.00043 * 72.36331 * 7 6 5 33 33 H 1.07997 * 119.78756 * 359.95737 * 9 8 7 34 34 H 1.08000 * 119.83307 * 180.02562 * 10 9 8 35 35 H 1.07996 * 120.04946 * 180.02562 * 11 10 9 36 36 H 0.96996 * 119.99884 * 180.02562 * 16 15 13 37 37 H 1.07998 * 120.16552 * 0.05100 * 21 8 7 38 38 H 1.08001 * 119.54522 * 180.02562 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3516 1.5252 0.0005 5 6 3.8732 2.8095 0.0064 6 6 5.2549 2.9775 0.0021 7 7 5.8195 4.2511 0.0031 8 6 6.4340 4.7439 -1.1513 9 6 6.3721 4.0153 -2.3375 10 6 6.9770 4.4947 -3.4872 11 6 7.6473 5.6974 -3.4705 12 6 7.7182 6.4445 -2.2797 13 6 8.3998 7.6832 -2.2565 14 1 9.2172 7.8627 -2.9392 15 6 8.0153 8.6764 -1.3489 16 7 6.8892 8.5625 -0.6926 17 14 9.1098 10.1651 -1.0745 18 1 8.7328 11.2392 -2.0281 19 1 8.9385 10.6557 0.3166 20 1 10.5281 9.7839 -1.2937 21 6 7.1021 5.9541 -1.1148 22 6 6.0614 1.8364 0.0026 23 17 7.7912 1.9829 0.0044 24 6 5.4664 0.5931 0.0021 25 7 4.1511 0.4705 0.0007 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 3.2170 3.6674 0.0100 32 1 5.7861 4.7958 0.8050 33 1 5.8492 3.0706 -2.3602 34 1 6.9228 3.9224 -4.4015 35 1 8.1171 6.0672 -4.3698 36 1 6.6226 9.2511 -0.0638 37 1 7.1511 6.5194 -0.1960 38 1 6.0840 -0.2928 0.0029 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250212946.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:26 Heat of formation + Delta-G solvation = -2.324682 kcal Electronic energy + Delta-G solvation = -23228.710200 eV Core-core repulsion = 19675.306739 eV Total energy + Delta-G solvation = -3553.403461 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.88853 -40.00815 -39.01348 -37.37493 -36.82400 -35.21220 -33.07886 -32.33595 -31.37729 -30.78287 -29.23475 -27.13514 -25.10525 -24.45233 -23.33326 -22.88723 -21.87500 -19.79906 -18.97076 -18.18428 -17.91705 -17.55038 -17.29737 -16.79653 -16.48021 -16.20879 -15.59329 -15.13888 -15.04806 -14.65436 -14.55771 -14.10755 -13.97107 -13.71863 -13.59170 -13.35512 -12.98633 -12.75099 -12.62851 -12.61107 -12.51488 -12.16884 -12.13189 -11.69767 -11.62916 -11.41498 -11.30960 -10.95116 -10.86046 -10.52532 -9.48469 -9.23311 -8.60712 -8.16893 -6.33167 -0.12303 -0.09702 1.06308 1.13397 1.26892 1.40458 1.51890 1.56708 1.84495 2.24378 2.45224 2.57593 2.82575 3.17062 3.67389 3.79775 3.85964 4.10894 4.14109 4.34711 4.37915 4.47532 4.53788 4.65807 4.68328 4.88872 4.95415 4.96778 5.06789 5.19565 5.23374 5.24822 5.42422 5.50717 5.89115 6.04427 6.11112 6.16322 6.19132 6.53745 6.58098 6.80511 6.88622 7.03232 7.12324 8.41193 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.018700 B = 0.003310 C = 0.003113 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1496.974950 B = 8458.121602 C = 8993.093488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.059 3.941 3 O -0.313 6.313 4 C 0.333 3.667 5 C -0.201 4.201 6 C 0.251 3.749 7 N -0.701 5.701 8 C 0.221 3.779 9 C -0.274 4.274 10 C -0.066 4.066 11 C -0.269 4.269 12 C 0.107 3.893 13 C -0.500 4.500 14 H 0.072 0.928 15 C 0.036 3.964 16 N -0.827 5.827 17 Si 0.979 3.021 18 H -0.265 1.265 19 H -0.267 1.267 20 H -0.261 1.261 21 C -0.229 4.229 22 C -0.144 4.144 23 Cl -0.046 7.046 24 C 0.167 3.833 25 N -0.534 5.534 26 H 0.102 0.898 27 H 0.065 0.935 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.150 0.850 32 H 0.412 0.588 33 H 0.094 0.906 34 H 0.116 0.884 35 H 0.093 0.907 36 H 0.285 0.715 37 H 0.106 0.894 38 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.910 -14.784 5.089 17.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.016 4.016 3 O -0.221 6.221 4 C 0.154 3.846 5 C -0.224 4.224 6 C 0.148 3.852 7 N -0.332 5.332 8 C 0.124 3.876 9 C -0.296 4.296 10 C -0.085 4.085 11 C -0.289 4.289 12 C 0.105 3.895 13 C -0.530 4.530 14 H 0.090 0.910 15 C -0.178 4.178 16 N -0.453 5.453 17 Si 0.800 3.200 18 H -0.189 1.189 19 H -0.192 1.192 20 H -0.185 1.185 21 C -0.253 4.253 22 C -0.176 4.176 23 Cl -0.017 7.017 24 C 0.011 3.989 25 N -0.259 5.259 26 H 0.121 0.879 27 H 0.084 0.916 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.168 0.832 32 H 0.250 0.750 33 H 0.112 0.888 34 H 0.134 0.866 35 H 0.112 0.888 36 H 0.095 0.905 37 H 0.124 0.876 38 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -8.570 -15.398 5.185 18.370 hybrid contribution 0.972 1.778 0.321 2.052 sum -7.598 -13.620 5.506 16.540 Atomic orbital electron populations 1.21851 0.91074 1.04375 1.03272 1.22898 0.96266 0.79619 1.02780 1.86261 1.15854 1.32669 1.87288 1.19638 0.84667 0.89170 0.91145 1.21390 0.94215 0.97073 1.09735 1.17339 0.89899 0.85432 0.92548 1.41643 1.63745 1.14316 1.13509 1.17473 0.92302 0.92476 0.85318 1.20008 1.14303 1.02190 0.93107 1.20587 0.95983 0.94984 0.96935 1.21088 1.11060 0.99483 0.97265 1.17687 0.89292 0.91988 0.90580 1.19774 1.16435 0.98745 1.18029 0.90978 1.26648 0.95550 1.02332 0.93250 1.69873 1.19638 1.34610 1.21196 0.85257 0.79159 0.77133 0.78457 1.18950 1.19175 1.18535 1.20669 1.09092 0.96296 0.99239 1.22536 0.87018 0.95708 1.12369 1.98385 1.08128 1.98290 1.96932 1.22656 0.89112 0.95817 0.91352 1.67578 1.05483 1.32211 1.20655 0.87904 0.91603 0.91864 0.91494 0.91122 0.83204 0.74982 0.88768 0.86613 0.88840 0.90496 0.87585 0.78492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 10.28 71.98 0.74 -1.16 16 2 C 0.06 1.07 6.03 71.98 0.43 1.51 16 3 O -0.31 -7.85 10.11 -90.25 -0.91 -8.76 16 4 C 0.33 9.15 7.48 84.71 0.63 9.79 16 5 C -0.20 -5.99 9.99 22.59 0.23 -5.77 16 6 C 0.25 8.11 4.68 38.54 0.18 8.29 16 7 N -0.70 -25.94 5.03 -180.15 -0.91 -26.85 16 8 C 0.22 9.90 5.97 38.16 0.23 10.13 16 9 C -0.27 -12.01 8.94 22.59 0.20 -11.81 16 10 C -0.07 -2.97 10.02 22.20 0.22 -2.75 16 11 C -0.27 -13.47 9.79 22.76 0.22 -13.24 16 12 C 0.11 5.85 5.55 -21.31 -0.12 5.73 16 13 C -0.50 -27.23 9.06 23.46 0.21 -27.01 16 14 H 0.07 3.82 7.87 -2.91 -0.02 3.80 16 15 C 0.04 1.83 5.23 85.25 0.45 2.28 16 16 N -0.83 -42.95 10.86 21.82 0.24 -42.72 16 17 Si 0.98 38.66 29.58 68.60 2.03 40.69 16 18 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 19 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 21 C -0.23 -11.83 8.50 22.86 0.19 -11.64 16 22 C -0.14 -4.24 5.68 22.53 0.13 -4.12 16 23 Cl -0.05 -1.43 27.79 -2.72 -0.08 -1.50 16 24 C 0.17 4.08 10.96 84.56 0.93 5.00 16 25 N -0.53 -13.69 9.21 -309.10 -2.85 -16.53 16 26 H 0.10 0.82 8.14 -2.38 -0.02 0.80 16 27 H 0.06 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 30 H 0.07 1.22 8.10 -2.39 -0.02 1.20 16 31 H 0.15 4.36 8.06 -2.91 -0.02 4.34 16 32 H 0.41 14.38 8.83 -92.71 -0.82 13.56 16 33 H 0.09 3.88 6.66 -2.91 -0.02 3.86 16 34 H 0.12 4.44 8.06 -2.91 -0.02 4.42 16 35 H 0.09 4.47 8.06 -2.91 -0.02 4.45 16 36 H 0.28 13.42 8.30 -92.71 -0.77 12.65 16 37 H 0.11 5.70 6.22 -2.91 -0.02 5.68 16 38 H 0.20 3.48 8.06 -2.91 -0.02 3.45 16 Total: -1.00 -60.29 342.80 2.68 -57.60 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.28 Total: 32.84 kcal Atomic # 6 Polarization: -39.64 SS G_CDS: 4.88 Total: -34.76 kcal Atomic # 7 Polarization: -82.58 SS G_CDS: -3.52 Total: -86.10 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.91 Total: -8.76 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 2.03 Total: 40.69 kcal Atomic # 17 Polarization: -1.43 SS G_CDS: -0.08 Total: -1.50 kcal Total: -60.29 2.68 -57.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250212946.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.280 kcal (2) G-P(sol) polarization free energy of solvation -60.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds