Wall clock time and date at job start Tue Mar 31 2020 12:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47203 * 2 1 4 4 C 1.35709 * 116.99895 * 180.02562 * 3 2 1 5 5 C 1.38621 * 119.63174 * 180.02562 * 4 3 2 6 6 C 1.39218 * 119.03028 * 180.02562 * 5 4 3 7 7 N 1.39240 * 120.84387 * 179.97438 * 6 5 4 8 8 C 1.38757 * 119.99985 * 6.11095 * 7 6 5 9 9 C 1.38787 * 120.29374 * 257.49595 * 8 7 6 10 10 C 1.38130 * 120.02064 * 180.02562 * 9 8 7 11 11 C 1.38923 * 120.63235 * 359.97438 * 10 9 8 12 12 C 1.36429 * 120.60285 * 0.02562 * 11 10 9 13 13 C 1.40738 * 119.95047 * 359.72230 * 12 11 10 14 14 C 1.41021 * 120.31077 * 180.28034 * 13 12 11 15 15 H 1.08001 * 120.00008 * 204.54535 * 14 13 12 16 16 C 1.39920 * 120.00183 * 24.54222 * 14 13 12 17 17 N 1.30882 * 119.99537 * 18.48032 * 16 14 13 18 18 Si 1.86798 * 120.00333 * 198.48728 * 16 14 13 19 19 H 1.48504 * 109.46959 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47289 * 119.99474 * 18 16 14 21 21 H 1.48496 * 109.47116 * 239.99783 * 18 16 14 22 22 C 1.39752 * 118.31402 * 359.97438 * 6 5 4 23 23 Cl 1.73605 * 120.41049 * 179.97438 * 22 6 5 24 24 C 1.37843 * 119.17325 * 359.97438 * 22 6 5 25 25 N 1.32091 * 120.89796 * 0.02562 * 24 22 6 26 26 H 1.08993 * 109.47147 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46907 * 300.00252 * 1 2 3 28 28 H 1.09003 * 109.46988 * 59.99822 * 1 2 3 29 29 H 1.08997 * 109.46923 * 239.99684 * 2 1 3 30 30 H 1.09002 * 109.47412 * 119.99856 * 2 1 3 31 31 H 1.08001 * 120.48475 * 0.03649 * 5 4 3 32 32 H 0.96998 * 120.00408 * 186.10486 * 7 6 5 33 33 H 1.07995 * 119.99090 * 359.97019 * 9 8 7 34 34 H 1.07998 * 119.68401 * 179.97438 * 10 9 8 35 35 H 1.08003 * 119.69439 * 179.97438 * 11 10 9 36 36 H 1.07999 * 120.02651 * 180.02562 * 12 11 10 37 37 H 0.97007 * 119.99562 * 180.02562 * 17 16 14 38 38 H 1.08003 * 119.55032 * 179.72196 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3518 1.5250 -0.0005 5 6 3.8734 2.8094 0.0000 6 6 5.2554 2.9772 -0.0011 7 7 5.8199 4.2501 -0.0012 8 6 5.0091 5.3687 0.1277 9 6 4.6942 6.1370 -0.9843 10 6 3.8869 7.2497 -0.8494 11 6 3.3824 7.6117 0.3934 12 6 3.6756 6.8749 1.5035 13 6 4.4914 5.7333 1.3937 14 6 4.7945 4.9627 2.5353 15 1 5.6896 4.3588 2.5570 16 6 3.9357 4.9807 3.6398 17 7 2.7030 5.3988 3.5034 18 14 4.5485 4.4081 5.3089 19 1 5.9683 3.9872 5.1972 20 1 4.4371 5.5211 6.2856 21 1 3.7273 3.2603 5.7706 22 6 6.0618 1.8358 -0.0022 23 17 7.7917 1.9820 -0.0043 24 6 5.4665 0.5926 -0.0015 25 7 4.1512 0.4703 -0.0005 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.2173 3.6672 0.0014 32 1 6.7800 4.3549 -0.0913 33 1 5.0811 5.8654 -1.9553 34 1 3.6456 7.8440 -1.7183 35 1 2.7530 8.4849 0.4816 36 1 3.2781 7.1645 2.4649 37 1 2.1077 5.4116 4.2692 38 1 6.0838 -0.2936 -0.0069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250213157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:30 Heat of formation + Delta-G solvation = 7.745669 kcal Electronic energy + Delta-G solvation = -24134.523523 eV Core-core repulsion = 20581.556745 eV Total energy + Delta-G solvation = -3552.966778 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.18082 -38.44572 -37.47370 -36.01650 -34.95083 -33.80623 -31.75570 -30.52631 -29.72263 -29.27855 -27.86211 -25.31635 -23.57177 -22.95208 -21.79025 -21.12104 -20.15798 -18.20021 -17.44394 -17.15271 -16.08797 -15.92754 -15.66505 -15.14982 -14.68266 -14.31169 -14.11211 -13.79570 -13.56074 -13.40433 -12.82241 -12.60659 -12.54636 -12.48468 -11.93396 -11.67431 -11.35786 -11.33946 -11.30348 -11.20677 -11.00764 -10.87093 -10.71187 -10.53125 -10.35577 -9.82116 -9.61525 -9.30265 -9.18919 -7.95146 -7.67463 -7.58460 -7.16707 -6.86101 -4.50554 1.60805 1.99588 2.54808 2.61480 2.79670 3.01094 3.06155 3.13274 3.39395 3.83710 4.18497 4.29025 4.49523 4.72978 5.17179 5.22579 5.28173 5.48649 5.49931 5.60645 5.76346 5.97836 6.06803 6.09911 6.12919 6.23003 6.28588 6.39858 6.52751 6.79050 6.91432 7.02954 7.16195 7.28190 7.57217 7.71852 7.77760 7.94955 8.04394 8.12161 8.29967 8.33914 8.55761 8.70395 8.87617 10.00336 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.008416 B = 0.006000 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.046730 B = 4665.555429 C = 5154.154010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.068 3.932 3 O -0.302 6.302 4 C 0.350 3.650 5 C -0.226 4.226 6 C 0.312 3.688 7 N -0.635 5.635 8 C -0.025 4.025 9 C -0.076 4.076 10 C -0.241 4.241 11 C -0.098 4.098 12 C -0.156 4.156 13 C 0.121 3.879 14 C -0.439 4.439 15 H 0.079 0.921 16 C 0.079 3.921 17 N -0.777 5.777 18 Si 0.903 3.097 19 H -0.259 1.259 20 H -0.270 1.270 21 H -0.273 1.273 22 C -0.206 4.206 23 Cl -0.077 7.077 24 C 0.180 3.820 25 N -0.579 5.579 26 H 0.074 0.926 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.150 0.850 32 H 0.397 0.603 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.089 0.911 36 H 0.120 0.880 37 H 0.283 0.717 38 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.115 -7.042 -3.994 8.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.007 4.007 3 O -0.210 6.210 4 C 0.174 3.826 5 C -0.253 4.253 6 C 0.196 3.804 7 N -0.254 5.254 8 C -0.118 4.118 9 C -0.096 4.096 10 C -0.261 4.261 11 C -0.117 4.117 12 C -0.176 4.176 13 C 0.116 3.884 14 C -0.468 4.468 15 H 0.097 0.903 16 C -0.141 4.141 17 N -0.401 5.401 18 Si 0.727 3.273 19 H -0.182 1.182 20 H -0.195 1.195 21 H -0.198 1.198 22 C -0.241 4.241 23 Cl -0.049 7.049 24 C 0.023 3.977 25 N -0.307 5.307 26 H 0.093 0.907 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.168 0.832 32 H 0.234 0.766 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.137 0.863 37 H 0.094 0.906 38 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 0.293 -7.453 -3.835 8.387 hybrid contribution 1.076 0.423 0.851 1.436 sum 1.369 -7.030 -2.984 7.759 Atomic orbital electron populations 1.21811 0.93530 1.02331 1.03372 1.22498 0.94358 0.81773 1.02114 1.86272 1.17215 1.29748 1.87768 1.19404 0.83449 0.89351 0.90364 1.20374 0.93226 0.96389 1.15280 1.17524 0.90758 0.85138 0.87010 1.41260 1.08247 1.00916 1.74947 1.17269 1.09160 0.92344 0.93006 1.20683 0.97583 0.95589 0.95759 1.20198 1.07739 1.01535 0.96657 1.20490 0.99072 0.98605 0.93489 1.21009 1.03063 0.95515 0.97975 1.17729 0.89396 0.90604 0.90628 1.19464 1.06904 1.23032 0.97384 0.90286 1.25932 0.93966 0.93229 1.01008 1.69847 1.04234 1.33542 1.32452 0.86326 0.80609 0.79149 0.81251 1.18218 1.19493 1.19789 1.21205 0.84319 0.94845 1.23773 1.98292 1.10691 1.98104 1.97851 1.21804 0.89279 0.94635 0.91998 1.67392 1.04957 1.32509 1.25807 0.90740 0.91625 0.91778 0.91987 0.91909 0.83229 0.76552 0.89132 0.89192 0.89284 0.86251 0.90622 0.82601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 10.28 37.16 0.38 -1.38 16 2 C 0.07 0.99 6.03 37.16 0.22 1.21 16 3 O -0.30 -5.69 10.11 -18.83 -0.19 -5.88 16 4 C 0.35 6.94 7.48 -17.19 -0.13 6.81 16 5 C -0.23 -4.83 9.24 -39.08 -0.36 -5.19 16 6 C 0.31 6.23 6.26 -83.57 -0.52 5.71 16 7 N -0.63 -12.74 4.62 -7.87 -0.04 -12.78 16 8 C -0.02 -0.55 4.55 -83.26 -0.38 -0.93 16 9 C -0.08 -1.62 9.96 -39.42 -0.39 -2.01 16 10 C -0.24 -5.08 10.03 -39.37 -0.40 -5.47 16 11 C -0.10 -2.16 9.96 -39.98 -0.40 -2.56 16 12 C -0.16 -3.78 8.64 -39.29 -0.34 -4.12 16 13 C 0.12 2.96 5.35 -106.64 -0.57 2.39 16 14 C -0.44 -10.95 8.35 -37.90 -0.32 -11.27 16 15 H 0.08 1.99 7.59 -52.49 -0.40 1.59 16 16 C 0.08 1.89 5.12 -17.33 -0.09 1.81 16 17 N -0.78 -19.08 11.00 55.55 0.61 -18.47 16 18 Si 0.90 18.47 29.60 -169.99 -5.03 13.44 16 19 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 20 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 21 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 22 C -0.21 -3.61 6.36 -39.16 -0.25 -3.86 16 23 Cl -0.08 -1.17 27.76 -51.86 -1.44 -2.61 16 24 C 0.18 2.96 10.96 -17.58 -0.19 2.77 16 25 N -0.58 -10.47 9.21 -13.40 -0.12 -10.60 16 26 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 27 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.85 8.10 -51.93 -0.42 0.42 16 30 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 31 H 0.15 3.57 6.99 -52.49 -0.37 3.21 16 32 H 0.40 7.29 7.65 -40.82 -0.31 6.98 16 33 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 34 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 35 H 0.09 1.75 8.06 -52.48 -0.42 1.33 16 36 H 0.12 2.99 6.18 -52.49 -0.32 2.67 16 37 H 0.28 6.35 8.30 -40.82 -0.34 6.01 16 38 H 0.16 2.05 8.06 -52.48 -0.42 1.63 16 LS Contribution 341.80 15.07 5.15 5.15 Total: -1.00 -25.99 341.80 -9.13 -35.12 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -4.34 Total: 12.71 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: -3.73 Total: -16.09 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: 0.45 Total: -41.84 kcal Atomic # 8 Polarization: -5.69 SS G_CDS: -0.19 Total: -5.88 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.44 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.44 Total: -2.61 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -25.99 -9.13 -35.12 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250213157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.862 kcal (2) G-P(sol) polarization free energy of solvation -25.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds