Wall clock time and date at job start Tue Mar 31 2020 12:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42901 * 109.47203 * 2 1 4 4 C 1.35709 * 116.99895 * 180.02562 * 3 2 1 5 5 C 1.38621 * 119.63174 * 180.02562 * 4 3 2 6 6 C 1.39218 * 119.03028 * 180.02562 * 5 4 3 7 7 N 1.39240 * 120.84387 * 179.97438 * 6 5 4 8 8 C 1.38757 * 119.99985 * 6.11095 * 7 6 5 9 9 C 1.38787 * 120.29374 * 257.49595 * 8 7 6 10 10 C 1.38130 * 120.02064 * 180.02562 * 9 8 7 11 11 C 1.38923 * 120.63235 * 359.97438 * 10 9 8 12 12 C 1.36429 * 120.60285 * 0.02562 * 11 10 9 13 13 C 1.40738 * 119.95047 * 359.72230 * 12 11 10 14 14 C 1.41021 * 120.31077 * 180.28034 * 13 12 11 15 15 H 1.08001 * 120.00008 * 204.54535 * 14 13 12 16 16 C 1.39920 * 120.00183 * 24.54222 * 14 13 12 17 17 N 1.30882 * 119.99537 * 18.48032 * 16 14 13 18 18 Si 1.86798 * 120.00333 * 198.48728 * 16 14 13 19 19 H 1.48504 * 109.46959 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47289 * 119.99474 * 18 16 14 21 21 H 1.48496 * 109.47116 * 239.99783 * 18 16 14 22 22 C 1.39752 * 118.31402 * 359.97438 * 6 5 4 23 23 Cl 1.73605 * 120.41049 * 179.97438 * 22 6 5 24 24 C 1.37843 * 119.17325 * 359.97438 * 22 6 5 25 25 N 1.32091 * 120.89796 * 0.02562 * 24 22 6 26 26 H 1.08993 * 109.47147 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46907 * 300.00252 * 1 2 3 28 28 H 1.09003 * 109.46988 * 59.99822 * 1 2 3 29 29 H 1.08997 * 109.46923 * 239.99684 * 2 1 3 30 30 H 1.09002 * 109.47412 * 119.99856 * 2 1 3 31 31 H 1.08001 * 120.48475 * 0.03649 * 5 4 3 32 32 H 0.96998 * 120.00408 * 186.10486 * 7 6 5 33 33 H 1.07995 * 119.99090 * 359.97019 * 9 8 7 34 34 H 1.07998 * 119.68401 * 179.97438 * 10 9 8 35 35 H 1.08003 * 119.69439 * 179.97438 * 11 10 9 36 36 H 1.07999 * 120.02651 * 180.02562 * 12 11 10 37 37 H 0.97007 * 119.99562 * 180.02562 * 17 16 14 38 38 H 1.08003 * 119.55032 * 179.72196 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.3518 1.5250 -0.0005 5 6 3.8734 2.8094 0.0000 6 6 5.2554 2.9772 -0.0011 7 7 5.8199 4.2501 -0.0012 8 6 5.0091 5.3687 0.1277 9 6 4.6942 6.1370 -0.9843 10 6 3.8869 7.2497 -0.8494 11 6 3.3824 7.6117 0.3934 12 6 3.6756 6.8749 1.5035 13 6 4.4914 5.7333 1.3937 14 6 4.7945 4.9627 2.5353 15 1 5.6896 4.3588 2.5570 16 6 3.9357 4.9807 3.6398 17 7 2.7030 5.3988 3.5034 18 14 4.5485 4.4081 5.3089 19 1 5.9683 3.9872 5.1972 20 1 4.4371 5.5211 6.2856 21 1 3.7273 3.2603 5.7706 22 6 6.0618 1.8358 -0.0022 23 17 7.7917 1.9820 -0.0043 24 6 5.4665 0.5926 -0.0015 25 7 4.1512 0.4703 -0.0005 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 3.2173 3.6672 0.0014 32 1 6.7800 4.3549 -0.0913 33 1 5.0811 5.8654 -1.9553 34 1 3.6456 7.8440 -1.7183 35 1 2.7530 8.4849 0.4816 36 1 3.2781 7.1645 2.4649 37 1 2.1077 5.4116 4.2692 38 1 6.0838 -0.2936 -0.0069 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250213157.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:29 Heat of formation + Delta-G solvation = -5.734386 kcal Electronic energy + Delta-G solvation = -24135.108062 eV Core-core repulsion = 20581.556745 eV Total energy + Delta-G solvation = -3553.551317 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.64608 -40.04678 -38.97065 -37.33076 -36.54074 -35.58620 -32.91801 -32.10686 -31.50040 -30.66053 -29.51828 -27.09700 -24.90738 -24.37398 -23.17712 -22.89792 -21.78380 -19.67589 -19.21467 -18.68848 -17.59602 -17.27333 -17.22205 -16.79834 -16.17436 -15.97002 -15.71115 -15.24420 -14.99898 -14.77271 -14.50498 -14.32308 -13.77833 -13.58555 -13.45698 -13.17633 -13.10772 -12.88251 -12.66240 -12.57529 -12.46139 -12.36110 -12.17410 -12.14270 -11.58191 -11.57297 -11.30697 -11.08633 -10.64618 -9.46416 -9.37318 -9.32879 -8.83003 -8.56695 -6.35408 0.15656 0.48219 0.88616 1.04293 1.19286 1.32425 1.43973 1.46949 2.04561 2.14414 2.63470 2.72583 2.80759 3.39535 3.66277 3.88573 4.11117 4.11961 4.20219 4.43853 4.48136 4.53811 4.58668 4.68745 4.81818 4.85675 4.96555 4.99123 5.10345 5.17401 5.24802 5.28878 5.39506 5.54043 5.81845 6.00504 6.16358 6.30509 6.32051 6.38879 6.64193 6.80232 6.88603 6.89747 7.12395 8.24956 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.008416 B = 0.006000 C = 0.005431 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3326.046730 B = 4665.555429 C = 5154.154010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.061 3.939 3 O -0.323 6.323 4 C 0.346 3.654 5 C -0.252 4.252 6 C 0.303 3.697 7 N -0.636 5.636 8 C -0.019 4.019 9 C -0.084 4.084 10 C -0.236 4.236 11 C -0.102 4.102 12 C -0.181 4.181 13 C 0.096 3.904 14 C -0.463 4.463 15 H 0.068 0.932 16 C 0.042 3.958 17 N -0.808 5.808 18 Si 0.962 3.038 19 H -0.261 1.261 20 H -0.259 1.259 21 H -0.271 1.271 22 C -0.208 4.208 23 Cl -0.053 7.053 24 C 0.188 3.812 25 N -0.575 5.575 26 H 0.107 0.893 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.072 0.928 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.405 0.595 33 H 0.113 0.887 34 H 0.120 0.880 35 H 0.111 0.889 36 H 0.103 0.897 37 H 0.288 0.712 38 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.892 -8.457 -4.692 9.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.014 4.014 3 O -0.231 6.231 4 C 0.170 3.830 5 C -0.279 4.279 6 C 0.188 3.812 7 N -0.256 5.256 8 C -0.112 4.112 9 C -0.103 4.103 10 C -0.255 4.255 11 C -0.121 4.121 12 C -0.201 4.201 13 C 0.092 3.908 14 C -0.492 4.492 15 H 0.086 0.914 16 C -0.175 4.175 17 N -0.433 5.433 18 Si 0.784 3.216 19 H -0.184 1.184 20 H -0.184 1.184 21 H -0.196 1.196 22 C -0.243 4.243 23 Cl -0.024 7.024 24 C 0.032 3.968 25 N -0.303 5.303 26 H 0.126 0.874 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.090 0.910 30 H 0.080 0.920 31 H 0.132 0.868 32 H 0.243 0.757 33 H 0.131 0.869 34 H 0.138 0.862 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges 1.072 -8.871 -4.547 10.026 hybrid contribution 0.852 0.830 0.918 1.502 sum 1.924 -8.041 -3.629 9.029 Atomic orbital electron populations 1.21845 0.91272 1.04352 1.02957 1.22831 0.96146 0.79916 1.02488 1.86262 1.16874 1.32484 1.87503 1.19462 0.84172 0.89250 0.90070 1.20189 0.93631 0.96036 1.18028 1.17637 0.90670 0.85685 0.87248 1.41162 1.08367 1.00607 1.75488 1.17406 1.08403 0.92754 0.92686 1.20989 0.97476 0.95482 0.96383 1.20579 1.06443 1.01345 0.97182 1.20764 0.99003 0.98977 0.93308 1.20998 1.04442 0.96515 0.98177 1.18012 0.90188 0.90944 0.91648 1.19468 1.07085 1.24025 0.98638 0.91398 1.26592 0.93886 0.93278 1.03735 1.69891 1.05032 1.34920 1.33443 0.85437 0.79680 0.78888 0.77580 1.18446 1.18359 1.19650 1.21276 0.85622 0.94292 1.23132 1.98300 1.08342 1.98065 1.97738 1.22486 0.89007 0.95610 0.89739 1.67518 1.05579 1.31444 1.25745 0.87435 0.92536 0.91678 0.91011 0.91998 0.86790 0.75657 0.86892 0.86184 0.87103 0.87935 0.90122 0.78595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 10.28 71.98 0.74 -2.45 16 2 C 0.06 1.71 6.03 71.98 0.43 2.14 16 3 O -0.32 -12.35 10.11 -90.30 -0.91 -13.26 16 4 C 0.35 13.86 7.48 84.71 0.63 14.49 16 5 C -0.25 -11.08 9.24 22.60 0.21 -10.87 16 6 C 0.30 12.15 6.26 38.57 0.24 12.39 16 7 N -0.64 -25.64 4.62 -178.83 -0.83 -26.46 16 8 C -0.02 -0.86 4.55 38.99 0.18 -0.68 16 9 C -0.08 -3.49 9.96 22.38 0.22 -3.26 16 10 C -0.24 -9.63 10.03 22.41 0.22 -9.40 16 11 C -0.10 -4.49 9.96 22.01 0.22 -4.28 16 12 C -0.18 -9.09 8.64 22.46 0.19 -8.90 16 13 C 0.10 4.87 5.35 -21.17 -0.11 4.76 16 14 C -0.46 -23.93 8.35 23.36 0.20 -23.74 16 15 H 0.07 3.54 7.59 -2.91 -0.02 3.51 16 16 C 0.04 2.08 5.12 85.24 0.44 2.52 16 17 N -0.81 -41.25 11.00 21.83 0.24 -41.01 16 18 Si 0.96 38.61 29.60 68.60 2.03 40.64 16 19 H -0.26 -10.42 7.11 99.48 0.71 -9.71 16 20 H -0.26 -9.84 7.11 99.48 0.71 -9.14 16 21 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 22 C -0.21 -7.00 6.36 22.54 0.14 -6.85 16 23 Cl -0.05 -1.48 27.76 -2.72 -0.08 -1.56 16 24 C 0.19 5.77 10.96 84.56 0.93 6.70 16 25 N -0.57 -20.05 9.21 -309.10 -2.85 -22.90 16 26 H 0.11 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.06 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 30 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 31 H 0.11 5.79 6.99 -2.91 -0.02 5.77 16 32 H 0.41 14.70 7.65 -92.71 -0.71 13.99 16 33 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 34 H 0.12 4.15 8.06 -2.91 -0.02 4.13 16 35 H 0.11 4.28 8.06 -2.91 -0.02 4.26 16 36 H 0.10 5.40 6.18 -2.91 -0.02 5.38 16 37 H 0.29 13.40 8.30 -92.70 -0.77 12.63 16 38 H 0.20 4.37 8.06 -2.91 -0.02 4.35 16 Total: -1.00 -57.76 341.80 2.89 -54.87 By element: Atomic # 1 Polarization: 36.71 SS G_CDS: 0.39 Total: 37.11 kcal Atomic # 6 Polarization: -32.31 SS G_CDS: 4.89 Total: -27.43 kcal Atomic # 7 Polarization: -86.94 SS G_CDS: -3.43 Total: -90.37 kcal Atomic # 8 Polarization: -12.35 SS G_CDS: -0.91 Total: -13.26 kcal Atomic # 14 Polarization: 38.61 SS G_CDS: 2.03 Total: 40.64 kcal Atomic # 17 Polarization: -1.48 SS G_CDS: -0.08 Total: -1.56 kcal Total: -57.76 2.89 -54.87 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250213157.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.139 kcal (2) G-P(sol) polarization free energy of solvation -57.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds