Wall clock time and date at job start Tue Mar 31 2020 12:21:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47472 * 2 1 4 4 C 1.35714 * 117.00158 * 179.97438 * 3 2 1 5 5 N 1.32380 * 119.64881 * 359.97438 * 4 3 2 6 6 C 1.32045 * 121.84970 * 180.02562 * 5 4 3 7 7 C 1.37819 * 120.93323 * 359.73978 * 6 5 4 8 8 C 1.39614 * 119.19275 * 0.51409 * 7 6 5 9 9 N 1.39257 * 120.83649 * 179.77357 * 8 7 6 10 10 C 1.38742 * 120.00461 * 2.37072 * 9 8 7 11 11 C 1.38786 * 120.29806 * 260.55017 * 10 9 8 12 12 C 1.38134 * 120.02457 * 179.97438 * 11 10 9 13 13 C 1.38922 * 120.63384 * 0.02562 * 12 11 10 14 14 C 1.36438 * 120.59898 * 0.02562 * 13 12 11 15 15 C 1.40743 * 119.94945 * 359.69593 * 14 13 12 16 16 C 1.41024 * 120.30414 * 180.27722 * 15 14 13 17 17 H 1.08002 * 119.99532 * 210.07220 * 16 15 14 18 18 C 1.39919 * 120.00059 * 30.07452 * 16 15 14 19 19 N 1.30878 * 119.99919 * 11.33173 * 18 16 15 20 20 Si 1.86803 * 119.99994 * 191.33289 * 18 16 15 21 21 H 1.48492 * 109.47405 * 59.99695 * 20 18 16 22 22 H 1.48498 * 109.46889 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47018 * 299.99888 * 20 18 16 24 24 C 1.38660 * 119.64778 * 179.97438 * 4 3 2 25 25 Cl 1.73595 * 120.50097 * 359.95509 * 24 4 3 26 26 H 1.08997 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47394 * 300.00337 * 1 2 3 28 28 H 1.09003 * 109.46635 * 59.99924 * 1 2 3 29 29 H 1.09001 * 109.47394 * 239.99663 * 2 1 3 30 30 H 1.08998 * 109.47224 * 119.99663 * 2 1 3 31 31 H 1.08006 * 119.53737 * 179.97438 * 6 5 4 32 32 H 1.07995 * 120.40571 * 180.28069 * 7 6 5 33 33 H 0.96999 * 119.99658 * 182.64490 * 9 8 7 34 34 H 1.07997 * 119.98301 * 359.94576 * 11 10 9 35 35 H 1.07999 * 119.68215 * 180.02562 * 12 11 10 36 36 H 1.07992 * 119.69863 * 179.97438 * 13 12 11 37 37 H 1.08004 * 120.02066 * 179.97438 * 14 13 12 38 38 H 0.97006 * 119.99970 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 0.0005 5 7 4.1517 0.4702 0.0015 6 6 5.4665 0.5928 0.0026 7 6 6.0622 1.8356 -0.0027 8 6 5.2574 2.9765 0.0017 9 7 5.8230 4.2490 0.0014 10 6 7.2016 4.3955 -0.0531 11 6 7.9257 4.6436 1.1046 12 6 9.2981 4.7879 1.0439 13 6 9.9675 4.6878 -0.1693 14 6 9.2811 4.4455 -1.3232 15 6 7.8828 4.2884 -1.2893 16 6 7.1666 4.0319 -2.4767 17 1 6.1478 4.3759 -2.5777 18 6 7.7757 3.3319 -3.5239 19 7 8.9185 2.7248 -3.3276 20 14 6.9580 3.2638 -5.2021 21 1 6.8035 4.6416 -5.7337 22 1 7.7988 2.4658 -6.1303 23 1 5.6214 2.6291 -5.0760 24 6 3.8740 2.8096 0.0000 25 17 2.8201 4.1890 -0.0025 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 6.0839 -0.2934 0.0038 32 1 7.1383 1.9259 -0.0063 33 1 5.2533 5.0329 0.0432 34 1 7.4158 4.7243 2.0532 35 1 9.8561 4.9805 1.9483 36 1 11.0407 4.8036 -0.1993 37 1 9.8109 4.3698 -2.2614 38 1 9.3406 2.2391 -4.0535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250248553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:37 Heat of formation + Delta-G solvation = 8.638948 kcal Electronic energy + Delta-G solvation = -23955.154883 eV Core-core repulsion = 20402.226840 eV Total energy + Delta-G solvation = -3552.928043 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.18921 -38.54056 -37.40630 -36.05500 -34.88523 -33.78893 -31.81569 -30.56184 -29.73414 -29.30853 -27.86826 -25.31291 -23.64195 -22.94479 -21.81449 -21.13659 -20.25156 -18.20849 -17.45769 -16.99447 -16.10837 -16.06256 -15.50789 -15.32829 -15.02438 -14.25508 -14.13480 -13.66137 -13.62976 -13.50273 -12.82423 -12.62703 -12.55475 -12.32963 -11.92847 -11.63538 -11.48731 -11.40072 -11.35281 -11.22482 -10.97600 -10.78880 -10.67037 -10.56772 -10.39106 -9.84155 -9.61452 -9.34728 -9.18996 -7.96708 -7.66873 -7.57329 -7.17567 -6.85033 -4.55283 1.61035 2.03361 2.57042 2.66043 2.76277 2.99950 3.04186 3.12677 3.22207 3.84528 4.19068 4.30243 4.50736 4.81953 5.07224 5.12773 5.33772 5.42370 5.49936 5.53949 5.72420 5.81329 5.87626 6.03968 6.05387 6.24460 6.35544 6.42836 6.55629 6.80125 6.90801 6.98168 7.14249 7.24872 7.54224 7.59245 7.74323 7.90239 8.01516 8.09038 8.26999 8.35932 8.53667 8.68883 8.83715 10.04174 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.005042 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.941777 B = 5552.198902 C = 6500.945820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.068 3.932 3 O -0.302 6.302 4 C 0.361 3.639 5 N -0.579 5.579 6 C 0.162 3.838 7 C -0.234 4.234 8 C 0.314 3.686 9 N -0.635 5.635 10 C -0.017 4.017 11 C -0.080 4.080 12 C -0.235 4.235 13 C -0.101 4.101 14 C -0.148 4.148 15 C 0.122 3.878 16 C -0.444 4.444 17 H 0.077 0.923 18 C 0.079 3.921 19 N -0.790 5.790 20 Si 0.905 3.095 21 H -0.263 1.263 22 H -0.276 1.276 23 H -0.264 1.264 24 C -0.201 4.201 25 Cl -0.069 7.069 26 H 0.075 0.925 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.063 0.937 31 H 0.156 0.844 32 H 0.147 0.853 33 H 0.397 0.603 34 H 0.091 0.909 35 H 0.091 0.909 36 H 0.090 0.910 37 H 0.120 0.880 38 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.755 -3.195 3.986 9.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.007 4.007 3 O -0.210 6.210 4 C 0.181 3.819 5 N -0.308 5.308 6 C 0.010 3.990 7 C -0.260 4.260 8 C 0.197 3.803 9 N -0.253 5.253 10 C -0.110 4.110 11 C -0.099 4.099 12 C -0.255 4.255 13 C -0.119 4.119 14 C -0.168 4.168 15 C 0.118 3.882 16 C -0.473 4.473 17 H 0.095 0.905 18 C -0.140 4.140 19 N -0.415 5.415 20 Si 0.729 3.271 21 H -0.188 1.188 22 H -0.201 1.201 23 H -0.189 1.189 24 C -0.236 4.236 25 Cl -0.041 7.041 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.174 0.826 32 H 0.165 0.835 33 H 0.234 0.766 34 H 0.110 0.890 35 H 0.109 0.891 36 H 0.108 0.892 37 H 0.138 0.862 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.049 -3.834 3.838 9.707 hybrid contribution -0.083 0.884 -0.862 1.238 sum -8.132 -2.950 2.976 9.148 Atomic orbital electron populations 1.21803 0.93526 1.02423 1.03161 1.22504 0.94197 0.81624 1.02385 1.86246 1.16906 1.29946 1.87856 1.18940 0.84069 0.87832 0.91090 1.67435 1.06531 1.30763 1.26065 1.22050 0.88738 0.96852 0.91399 1.21579 1.01890 0.90643 1.11900 1.17659 0.88244 0.87762 0.86679 1.41280 1.05449 1.03158 1.75444 1.17331 0.81512 1.19194 0.92964 1.20724 0.93932 0.99644 0.95649 1.20244 0.93556 1.14912 0.96788 1.20524 0.97782 1.00171 0.93446 1.21044 0.94460 1.03824 0.97470 1.17757 0.91945 0.87537 0.90977 1.19380 0.99958 1.30335 0.97618 0.90511 1.25865 0.94388 0.93248 1.00476 1.69781 1.15029 1.22911 1.33804 0.86384 0.80245 0.79501 0.80922 1.18752 1.20134 1.18850 1.19997 0.89483 0.86889 1.27272 1.98284 1.65657 1.42264 1.97856 0.90662 0.91829 0.91791 0.91792 0.91833 0.82638 0.83521 0.76629 0.89042 0.89085 0.89178 0.86181 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 10.28 37.16 0.38 -1.12 16 2 C 0.07 0.90 6.03 37.16 0.22 1.12 16 3 O -0.30 -5.05 9.58 -18.85 -0.18 -5.23 16 4 C 0.36 6.69 7.48 -17.16 -0.13 6.56 16 5 N -0.58 -10.48 9.21 -13.39 -0.12 -10.61 16 6 C 0.16 2.86 11.17 -17.61 -0.20 2.66 16 7 C -0.23 -4.64 9.33 -39.22 -0.37 -5.00 16 8 C 0.31 6.26 6.43 -83.56 -0.54 5.73 16 9 N -0.63 -12.73 4.65 -7.88 -0.04 -12.77 16 10 C -0.02 -0.37 4.52 -83.27 -0.38 -0.75 16 11 C -0.08 -1.64 9.96 -39.42 -0.39 -2.03 16 12 C -0.24 -4.78 10.03 -39.37 -0.40 -5.18 16 13 C -0.10 -2.15 9.97 -39.98 -0.40 -2.54 16 14 C -0.15 -3.50 8.59 -39.28 -0.34 -3.84 16 15 C 0.12 2.92 5.32 -106.63 -0.57 2.35 16 16 C -0.44 -10.90 8.44 -37.90 -0.32 -11.22 16 17 H 0.08 1.91 7.66 -52.49 -0.40 1.51 16 18 C 0.08 1.87 5.23 -17.33 -0.09 1.78 16 19 N -0.79 -18.97 10.96 55.55 0.61 -18.36 16 20 Si 0.91 18.46 29.58 -169.99 -5.03 13.43 16 21 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 22 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 23 H -0.26 -5.54 7.11 56.52 0.40 -5.14 16 24 C -0.20 -3.82 6.38 -39.01 -0.25 -4.07 16 25 Cl -0.07 -1.17 27.30 -51.86 -1.42 -2.59 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.85 8.10 -51.93 -0.42 0.43 16 30 H 0.06 0.81 8.10 -51.93 -0.42 0.39 16 31 H 0.16 2.27 8.06 -52.48 -0.42 1.85 16 32 H 0.15 3.15 6.96 -52.49 -0.37 2.78 16 33 H 0.40 7.42 7.63 -40.82 -0.31 7.11 16 34 H 0.09 1.72 8.06 -52.49 -0.42 1.30 16 35 H 0.09 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.09 1.71 8.06 -52.49 -0.42 1.29 16 37 H 0.12 2.95 6.34 -52.48 -0.33 2.61 16 38 H 0.28 6.28 8.30 -40.82 -0.34 5.95 16 LS Contribution 341.52 15.07 5.15 5.15 Total: -1.00 -25.54 341.52 -9.12 -34.66 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: -4.35 Total: 11.88 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -3.75 Total: -15.56 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.45 Total: -41.74 kcal Atomic # 8 Polarization: -5.05 SS G_CDS: -0.18 Total: -5.23 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.03 Total: 13.43 kcal Atomic # 17 Polarization: -1.17 SS G_CDS: -1.42 Total: -2.59 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -25.54 -9.12 -34.66 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250248553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.300 kcal (2) G-P(sol) polarization free energy of solvation -25.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.661 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds