Wall clock time and date at job start Tue Mar 31 2020 12:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 O 1.42900 * 109.47472 * 2 1 4 4 C 1.35714 * 117.00158 * 179.97438 * 3 2 1 5 5 N 1.32380 * 119.64881 * 359.97438 * 4 3 2 6 6 C 1.32045 * 121.84970 * 180.02562 * 5 4 3 7 7 C 1.37819 * 120.93323 * 359.73978 * 6 5 4 8 8 C 1.39614 * 119.19275 * 0.51409 * 7 6 5 9 9 N 1.39257 * 120.83649 * 179.77357 * 8 7 6 10 10 C 1.38742 * 120.00461 * 2.37072 * 9 8 7 11 11 C 1.38786 * 120.29806 * 260.55017 * 10 9 8 12 12 C 1.38134 * 120.02457 * 179.97438 * 11 10 9 13 13 C 1.38922 * 120.63384 * 0.02562 * 12 11 10 14 14 C 1.36438 * 120.59898 * 0.02562 * 13 12 11 15 15 C 1.40743 * 119.94945 * 359.69593 * 14 13 12 16 16 C 1.41024 * 120.30414 * 180.27722 * 15 14 13 17 17 H 1.08002 * 119.99532 * 210.07220 * 16 15 14 18 18 C 1.39919 * 120.00059 * 30.07452 * 16 15 14 19 19 N 1.30878 * 119.99919 * 11.33173 * 18 16 15 20 20 Si 1.86803 * 119.99994 * 191.33289 * 18 16 15 21 21 H 1.48492 * 109.47405 * 59.99695 * 20 18 16 22 22 H 1.48498 * 109.46889 * 180.02562 * 20 18 16 23 23 H 1.48499 * 109.47018 * 299.99888 * 20 18 16 24 24 C 1.38660 * 119.64778 * 179.97438 * 4 3 2 25 25 Cl 1.73595 * 120.50097 * 359.95509 * 24 4 3 26 26 H 1.08997 * 109.47479 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47394 * 300.00337 * 1 2 3 28 28 H 1.09003 * 109.46635 * 59.99924 * 1 2 3 29 29 H 1.09001 * 109.47394 * 239.99663 * 2 1 3 30 30 H 1.08998 * 109.47224 * 119.99663 * 2 1 3 31 31 H 1.08006 * 119.53737 * 179.97438 * 6 5 4 32 32 H 1.07995 * 120.40571 * 180.28069 * 7 6 5 33 33 H 0.96999 * 119.99658 * 182.64490 * 9 8 7 34 34 H 1.07997 * 119.98301 * 359.94576 * 11 10 9 35 35 H 1.07999 * 119.68215 * 180.02562 * 12 11 10 36 36 H 1.07992 * 119.69863 * 179.97438 * 13 12 11 37 37 H 1.08004 * 120.02066 * 179.97438 * 14 13 12 38 38 H 0.97006 * 119.99970 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3518 1.5250 0.0005 5 7 4.1517 0.4702 0.0015 6 6 5.4665 0.5928 0.0026 7 6 6.0622 1.8356 -0.0027 8 6 5.2574 2.9765 0.0017 9 7 5.8230 4.2490 0.0014 10 6 7.2016 4.3955 -0.0531 11 6 7.9257 4.6436 1.1046 12 6 9.2981 4.7879 1.0439 13 6 9.9675 4.6878 -0.1693 14 6 9.2811 4.4455 -1.3232 15 6 7.8828 4.2884 -1.2893 16 6 7.1666 4.0319 -2.4767 17 1 6.1478 4.3759 -2.5777 18 6 7.7757 3.3319 -3.5239 19 7 8.9185 2.7248 -3.3276 20 14 6.9580 3.2638 -5.2021 21 1 6.8035 4.6416 -5.7337 22 1 7.7988 2.4658 -6.1303 23 1 5.6214 2.6291 -5.0760 24 6 3.8740 2.8096 0.0000 25 17 2.8201 4.1890 -0.0025 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 6.0839 -0.2934 0.0038 32 1 7.1383 1.9259 -0.0063 33 1 5.2533 5.0329 0.0432 34 1 7.4158 4.7243 2.0532 35 1 9.8561 4.9805 1.9483 36 1 11.0407 4.8036 -0.1993 37 1 9.8109 4.3698 -2.2614 38 1 9.3406 2.2391 -4.0535 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250248553.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:36 Heat of formation + Delta-G solvation = -3.957563 kcal Electronic energy + Delta-G solvation = -23955.701109 eV Core-core repulsion = 20402.226840 eV Total energy + Delta-G solvation = -3553.474268 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 318.088 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.61995 -40.08510 -38.85605 -37.47287 -36.43955 -35.53105 -32.87882 -32.10898 -31.46588 -30.66909 -29.48586 -27.05119 -24.87272 -24.40714 -23.10642 -22.86124 -21.83964 -19.62328 -19.18274 -18.55391 -17.55583 -17.28321 -17.16944 -16.76444 -16.60795 -15.88366 -15.70061 -14.99664 -14.99309 -14.89536 -14.46079 -14.26803 -13.60828 -13.49627 -13.39278 -13.11870 -13.07289 -12.87861 -12.85713 -12.61485 -12.47125 -12.30411 -12.16800 -12.03535 -11.61756 -11.56793 -11.23087 -11.10212 -10.64057 -9.39555 -9.35524 -9.29826 -8.79282 -8.55246 -6.36554 0.15375 0.52604 0.88279 1.05333 1.21798 1.34092 1.41610 1.47847 1.92940 2.16551 2.67103 2.76492 2.83124 3.48042 3.65671 4.01960 4.04782 4.14199 4.21743 4.33015 4.45510 4.52680 4.60590 4.77285 4.86036 4.93283 4.99513 5.08226 5.13347 5.20966 5.25046 5.33083 5.42710 5.56787 5.84278 6.02183 6.16664 6.26278 6.32989 6.39308 6.62520 6.81775 6.90894 6.91307 7.12197 8.31222 Molecular weight = 318.09amu Principal moments of inertia in cm(-1) A = 0.012678 B = 0.005042 C = 0.004306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2207.941777 B = 5552.198902 C = 6500.945820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.061 3.939 3 O -0.309 6.309 4 C 0.357 3.643 5 N -0.577 5.577 6 C 0.171 3.829 7 C -0.252 4.252 8 C 0.303 3.697 9 N -0.637 5.637 10 C -0.011 4.011 11 C -0.086 4.086 12 C -0.226 4.226 13 C -0.103 4.103 14 C -0.171 4.171 15 C 0.099 3.901 16 C -0.469 4.469 17 H 0.062 0.938 18 C 0.047 3.953 19 N -0.815 5.815 20 Si 0.959 3.041 21 H -0.261 1.261 22 H -0.264 1.264 23 H -0.274 1.274 24 C -0.212 4.212 25 Cl -0.055 7.055 26 H 0.102 0.898 27 H 0.066 0.934 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.067 0.933 31 H 0.187 0.813 32 H 0.126 0.874 33 H 0.401 0.599 34 H 0.112 0.888 35 H 0.122 0.878 36 H 0.113 0.887 37 H 0.103 0.897 38 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.576 -3.831 4.799 10.547 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.014 4.014 3 O -0.216 6.216 4 C 0.177 3.823 5 N -0.306 5.306 6 C 0.018 3.982 7 C -0.278 4.278 8 C 0.187 3.813 9 N -0.257 5.257 10 C -0.104 4.104 11 C -0.105 4.105 12 C -0.246 4.246 13 C -0.121 4.121 14 C -0.191 4.191 15 C 0.096 3.904 16 C -0.499 4.499 17 H 0.080 0.920 18 C -0.169 4.169 19 N -0.441 5.441 20 Si 0.781 3.219 21 H -0.186 1.186 22 H -0.188 1.188 23 H -0.199 1.199 24 C -0.248 4.248 25 Cl -0.027 7.027 26 H 0.121 0.879 27 H 0.085 0.915 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.085 0.915 31 H 0.204 0.796 32 H 0.144 0.856 33 H 0.239 0.761 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.121 0.879 38 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -8.888 -4.467 4.662 10.986 hybrid contribution 0.123 1.066 -0.969 1.446 sum -8.765 -3.401 3.693 10.101 Atomic orbital electron populations 1.21821 0.90866 1.04258 1.03216 1.22828 0.96254 0.79964 1.02383 1.86256 1.15757 1.32213 1.87376 1.19139 0.84963 0.87781 0.90421 1.67550 1.06497 1.30564 1.25995 1.22489 0.88917 0.97178 0.89590 1.21502 1.00890 0.91669 1.13756 1.17773 0.88844 0.87618 0.87078 1.41202 1.04903 1.03553 1.76039 1.17453 0.82319 1.17836 0.92781 1.21005 0.94321 0.99129 0.96064 1.20624 0.93658 1.12825 0.97487 1.20794 0.99041 0.99209 0.93085 1.21017 0.94645 1.05679 0.97779 1.17990 0.92431 0.88263 0.91761 1.19369 0.99567 1.31977 0.98953 0.91959 1.26403 0.94876 0.92778 1.02810 1.69819 1.15959 1.23678 1.34669 0.85586 0.78920 0.79452 0.77897 1.18558 1.18817 1.19868 1.20095 0.89428 0.87838 1.27424 1.98278 1.65087 1.41538 1.97823 0.87916 0.91537 0.91945 0.92115 0.91481 0.79631 0.85576 0.76118 0.86966 0.86004 0.86903 0.87897 0.90180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 10.28 71.98 0.74 -1.78 16 2 C 0.06 1.49 6.03 71.98 0.43 1.92 16 3 O -0.31 -9.94 9.58 -90.36 -0.87 -10.81 16 4 C 0.36 12.93 7.48 84.71 0.63 13.56 16 5 N -0.58 -20.23 9.21 -309.07 -2.85 -23.07 16 6 C 0.17 5.89 11.17 84.56 0.94 6.83 16 7 C -0.25 -10.03 9.33 22.50 0.21 -9.82 16 8 C 0.30 12.15 6.43 38.56 0.25 12.39 16 9 N -0.64 -25.71 4.65 -178.83 -0.83 -26.54 16 10 C -0.01 -0.46 4.52 39.00 0.18 -0.29 16 11 C -0.09 -3.41 9.96 22.38 0.22 -3.19 16 12 C -0.23 -8.73 10.03 22.41 0.22 -8.51 16 13 C -0.10 -4.29 9.97 22.01 0.22 -4.07 16 14 C -0.17 -8.21 8.59 22.46 0.19 -8.02 16 15 C 0.10 4.86 5.32 -21.17 -0.11 4.75 16 16 C -0.47 -23.74 8.44 23.36 0.20 -23.54 16 17 H 0.06 3.22 7.66 -2.91 -0.02 3.20 16 18 C 0.05 2.28 5.23 85.24 0.45 2.73 16 19 N -0.82 -40.06 10.96 21.83 0.24 -39.82 16 20 Si 0.96 38.45 29.58 68.60 2.03 40.48 16 21 H -0.26 -10.28 7.11 99.48 0.71 -9.57 16 22 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 23 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 24 C -0.21 -8.00 6.38 22.64 0.14 -7.86 16 25 Cl -0.06 -1.86 27.30 -2.72 -0.07 -1.94 16 26 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 27 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 28 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.53 8.10 -2.39 -0.02 1.51 16 30 H 0.07 1.60 8.10 -2.39 -0.02 1.58 16 31 H 0.19 5.10 8.06 -2.91 -0.02 5.08 16 32 H 0.13 5.54 6.96 -2.91 -0.02 5.52 16 33 H 0.40 15.08 7.63 -92.71 -0.71 14.37 16 34 H 0.11 3.97 8.06 -2.91 -0.02 3.95 16 35 H 0.12 3.95 8.06 -2.91 -0.02 3.93 16 36 H 0.11 4.10 8.06 -2.91 -0.02 4.08 16 37 H 0.10 5.22 6.34 -2.91 -0.02 5.20 16 38 H 0.29 12.99 8.30 -92.70 -0.77 12.22 16 Total: -1.00 -54.86 341.52 2.96 -51.89 By element: Atomic # 1 Polarization: 34.30 SS G_CDS: 0.39 Total: 34.69 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 4.92 Total: -24.89 kcal Atomic # 7 Polarization: -86.00 SS G_CDS: -3.44 Total: -89.44 kcal Atomic # 8 Polarization: -9.94 SS G_CDS: -0.87 Total: -10.81 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 2.03 Total: 40.48 kcal Atomic # 17 Polarization: -1.86 SS G_CDS: -0.07 Total: -1.94 kcal Total: -54.86 2.96 -51.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250248553.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.936 kcal (2) G-P(sol) polarization free energy of solvation -54.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.920 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds